GENSCAN 1.0	Date run:  8-Nov-116	Time: 06:10:36

Sequence gi568815594r:40325907_40538893 : 212987 bp : 43.15% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.05 PlyA -    251    246    6                               1.05
 1.04 Term -   3255   3128  128  1  2   46   36   142 0.811   3.24
 1.03 Intr -   3919   3844   76  1  1   53  110    66 0.931   4.39
 1.02 Intr -   5204   5079  126  2  0   75   89   112 0.988  10.88
 1.01 Init -   5401   5351   51  1  0   58   44    65 0.936  -1.72
 1.00 Prom -   6816   6777   40                              -6.06

 2.00 Prom +   8490   8529   40                              -6.56
 2.01 Init +   9562   9625   64  0  1   63   78     4 0.883  -1.65
 2.02 Intr +   9921  10066  146  1  2   27  101   165 0.978  11.70
 2.03 Intr +  11304  11458  155  2  2   39  108   146 0.944  10.57
 2.04 Term +  14657  14744   88  2  1   55   46    92 0.664  -1.17
 2.05 PlyA +  15196  15201    6                               1.05

 3.00 Prom +  18707  18746   40                              -1.66
 3.01 Init +  22803  22915  113  2  2   73   74    58 0.897   2.58
 3.02 Intr +  22976  23508  533  2  2   89   95   632 0.997  56.57
 3.03 Term +  28073  28614  542  0  2   65   38   391 0.235  26.22
 3.04 PlyA +  29100  29105    6                               1.05

 4.00 Prom +  29196  29235   40                              -4.86
 4.01 Init +  33974  34014   41  1  2   61  105    11 0.264  -0.24
 4.02 Intr +  37789  37920  132  1  0  116   65    61 0.353   6.36
 4.03 Term +  49988  50018   31  2  1  117   42    43 0.050  -0.07
 4.04 PlyA +  52297  52302    6                               1.05

 5.05 PlyA -  55852  55847    6                               1.05
 5.04 Term -  70903  70820   84  1  0   95   44    59 0.401  -0.15
 5.03 Intr -  73566  73546   21  0  0  108   72    19 0.242   0.04
 5.02 Intr -  78535  78504   32  2  2  103  100    32 0.238   3.75
 5.01 Init -  81305  81179  127  2  1   81   98    22 0.184   2.83
 5.00 Prom -  81711  81672   40                              -4.56

 6.00 Prom +  92316  92355   40                              -2.96
 6.01 Init +  93427  93501   75  0  0   68   80   107 0.414   8.99
 6.02 Term +  93766  93861   96  0  0   79   34    17 0.267  -6.63
 6.03 PlyA +  94109  94114    6                               1.05

 7.06 PlyA -  94817  94812    6                               1.05
 7.05 Term - 100237  99998  240  1  0  100   54   314 0.994  25.23
 7.04 Intr - 106956 106745  212  1  2  100   80   237 0.962  22.73
 7.03 Intr - 110741 110535  207  0  0   27   82   110 0.469   3.35
 7.02 Intr - 113018 111865 1154  1  2  135   96  3198 0.892 313.97
 7.01 Init - 129171 129023  149  0  2   86   97    50 0.367   5.26
 7.00 Prom - 130196 130157   40                              -3.96

 8.00 Prom + 132700 132739   40                              -3.16
 8.01 Init + 137412 137647  236  2  2   93   35    87 0.052   1.51
 8.02 Term + 165816 165975  160  0  1   66   45   174 0.392   8.31
 8.03 PlyA + 167577 167582    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594r:40325907_40538893|GENSCAN_predicted_peptide_1|126_aa
MRRRMAGPGLTPTAAQPGDRDSVVDEELEFPDIGDGGNCGYSQARGWQGEQQGNGSEVQP
LLTAICTNHTCLLAANGAPEFPSPVDSLQWILTLFGIKAKILTGNYKAVRDVSPDFPSPT
LSPSLM

>gi568815594r:40325907_40538893|GENSCAN_predicted_CDS_1|381_bp
atgcgcagacgcatggcagggccagggctgactcccactgcagctcagccaggtgaccgt
gatagtgtcgtggatgaggaattagagtttccagatataggtgatggtgggaactgtggc
tacagccaggccaggggctggcagggtgagcagcaggggaatgggtcagaagttcaacca
ttgctgactgccatctgcaccaaccacacttgcctcctagcagccaacggtgcccctgaa
ttcccttctccagtggattctctccagtggattctcaccttatttggaataaaagccaaa
atccttactggcaactacaaggccgtacgtgatgtctcccccgactttccttctccaaca
ctctccccctcgctcatgtag

>gi568815594r:40325907_40538893|GENSCAN_predicted_peptide_2|150_aa
MNWSHSCISFCWIYFAASRLRAAETADGKYAQKLFNDLFEDYSNALRPVEDTDKVLNVTL
QITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRDQYDGLDSIRIPSDLVWRPDIVLY
NKYNIIASQKQVQNIIGNTMGFLSCGKKEK

>gi568815594r:40325907_40538893|GENSCAN_predicted_CDS_2|453_bp
atgaactggtcccattcctgcatctccttttgctggatctactttgctgcttccagactg
agagctgcagagacggcagatggaaaatatgctcagaagttgtttaatgacctttttgaa
gattattctaatgctcttcgtccagtggaagatacagataaagtcctgaatgtgaccctg
cagattacgctctctcagattaaggatatggatgaaagaaaccaaattctgactgcttat
ttgtggatccgccaaatctggcacgatgcctatctcacgtgggaccgagatcagtacgat
ggcctagactccatcaggatccccagtgacctcgtgtggaggccagacatcgtcttatat
aacaaatacaatatcattgcttctcagaagcaggtacagaacatcataggcaacacaatg
ggcttcctgagttgtggcaagaaggagaaatag

>gi568815594r:40325907_40538893|GENSCAN_predicted_peptide_3|395_aa
MEEKDKLELIPDFRATVTGKMVVHCQNTEVMGTVSCLGADDESSEPVNTNVVLRYDGLIT
WDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDIFNALDSGDLSDFIEDVEWE
VHGMPAVKNVISYGCCSEPYPDVTFTLLLKRRSSFYIVNLLIPCVLISFLAPLSFYLPAA
SGEKVSLGVTILLAMTVFQLMVAEIMPASENVPLIGKYYIATMALITASTALTIMVMNIH
FCGAEARPVPHWARVVILKYMSRVLFVYDVGESCLSPHHSRERDHLTKVYSKLPESNLKA
ARNKDLSRKKDMNKRLKNDLGCQGKNPQEAESYCAQYKVLTRNIEYIAKCLKDHKATNSK
GSEWKKVAKVIDRFFMWIFFIMVFVMTILIIARAD

>gi568815594r:40325907_40538893|GENSCAN_predicted_CDS_3|1188_bp
atggaggagaaggacaaattagagttgattccagacttccgagccacagtgacaggcaaa
atggtggtccattgccaaaacactgaagtgatggggacagtgagctgtctgggggctgat
gatgaatcttcagagcctgtgaacaccaatgtggtcctgcggtatgatgggctgatcacc
tgggatgcaccggccatcaccaaaagctcctgtgtggtggatgtcacctacttccctttt
gacaaccagcagtgcaacctgacttttggttcctggacctacaatggcaatcaggtggac
atattcaacgccttggacagcggagatctctctgacttcattgaagatgtggaatgggag
gtccatggcatgcccgctgtgaagaatgtgatctcctatggctgctgctctgagccttac
ccggatgtcacattcaccctccttctgaagaggaggtcctcgttctatatcgtcaacctc
ctcatcccatgcgtcctcatatcttttctggctcctctgagtttttatctcccagcagcc
tccggagaaaaggtctccctgggagtgaccatcctgttggccatgactgtatttcagcta
atggtggcagaaatcatgccggcctcagaaaatgtgcccctgataggtaaatactacata
gccacgatggccctgatcacagcctccactgcgttgaccatcatggtgatgaatatccac
ttctgtggggccgaggcccggccggtgccacactgggccagggtggtcatcctgaaatac
atgtccagggtcttgtttgtctatgatgtgggtgaaagctgcctcagcccgcaccacagt
agagagcgggaccacctcacgaaagtttatagcaaactcccagagtctaacctgaaagca
gccaggaacaaagacctttccagaaagaaggacatgaacaaacgcttaaagaacgacctg
ggctgccagggtaagaaccctcaggaggccgagagttactgtgcacagtacaaagtgctg
acgaggaatattgagtacatcgccaagtgcctcaaagaccacaaggccaccaattccaag
gggagtgaatggaagaaggtggcgaaagtcatagaccgattcttcatgtggatttttttc
attatggtgtttgtgatgactattttgatcatagcaagagcggattag

>gi568815594r:40325907_40538893|GENSCAN_predicted_peptide_4|67_aa
MVHQRCPSANVKDCLCVSFSVSLGLRPTLYQCNRDKPGNWTVLDKLETQVLEHLKQLWHS
LIPGHPI

>gi568815594r:40325907_40538893|GENSCAN_predicted_CDS_4|204_bp
atggtccaccaaagatgtccaagtgctaatgtgaaggactgcctctgtgtctccttttcc
gtcagcttagggctcagaccaacgctttaccaatgcaaccgggacaaacctggcaactgg
actgtcttggacaaactggaaacacaagttctagaacatctgaagcaattgtggcactcg
ctcattcctggacatcctatctaa

>gi568815594r:40325907_40538893|GENSCAN_predicted_peptide_5|87_aa
MGQNKGLQAPCKSEIQQGSQVLKLQNGLLCFHVSHPGHTDAKATRAMDTTNQEIKQFFQP
SKTKEQRYDSKVAVHIVKKEYNVTRII

>gi568815594r:40325907_40538893|GENSCAN_predicted_CDS_5|264_bp
atgggccagaacaagggactacaggccccatgcaagtctgaaatccagcagggcagtcaa
gtcttaaagctccaaaatggcctcctttgcttccatgtctcacatccaggtcacactgat
gcaaaagcgacaagggccatggatacaactaatcaggaaataaaacagttcttccagcca
agtaaaaccaaggagcaaagatatgattctaaagttgcagtccatattgtcaaaaaggaa
tataatgtaaccaggatcatctga

>gi568815594r:40325907_40538893|GENSCAN_predicted_peptide_6|56_aa
MQLLYDPRGKGEGPRGWNLDLHKKQLTQGHEPYLMLNSAKVGFLHTFSSFKAATLN

>gi568815594r:40325907_40538893|GENSCAN_predicted_CDS_6|171_bp
atgcagctgctgtatgacccaagaggaaagggtgaaggtcccagaggctggaacctggac
ctgcacaagaaacagttaacacagggccatgaaccctatttaatgttgaacagtgcaaag
gttggatttcttcacactttctcctcctttaaggcagccaccctgaactga

>gi568815594r:40325907_40538893|GENSCAN_predicted_peptide_7|653_aa
MGMVESNDFPTTLPCVCTGNSFHSISQCPFLTNRGLILLTLAIAKPAVSKFPPAVDAFDI
MTAEDSTAAMSSDSAAGSSAKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPP
GWEGPHPQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFDGKNRGYAFVMYCH
KHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLD
VIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDED
VMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKIRDYAFVHFTSREDAVHAMNN
LNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQQPSYVYSCDPYTLAYYGYP
YNALIGPNRDYFVKAGSIRGRGRGAAGNRAPGPRGSYLGGYSAGRGIYSRYHEGKGKQQE
KGYELVPNLEIPTVNPVAIKPGTVAIPAIGAQYSMFPAAPAPKMIEDGKIHTVEHMISPI
AVQPDPASAAAAAAAAAAAAAAVIPTVSTPPPFQGRPITPVYTVAPNVQRIPTAGIYGAS
YVPFAAPATATIATLQKNAAAAAAMYGGYAGYIPQAFPAAAIQVPIPDVYQTY

>gi568815594r:40325907_40538893|GENSCAN_predicted_CDS_7|1962_bp
atggggatggtagaaagtaatgatttcccaacaactttaccatgtgtctgtactggaaat
tccttccactctatcagccaatgtccatttctcaccaatcgtggtcttatcctgttaaca
ctggctattgctaaacctgctgtaagtaagtttccgccagctgtggatgcctttgacatt
atgaccgcagaggattccaccgcagccatgagcagtgactcggccgccgggtcctccgcc
aaggtgcccgagggcgtggcgggcgcgcccaacgaggcagcactgctggcgctgatggag
cgcacgggctacagcatggtgcaagagaacgggcagcgcaagtacggcggcccaccgccc
ggctgggagggcccgcacccgcagcgtggctgcgaggtcttcgtgggcaagatcccgcgc
gacgtgtacgaggacgagctggtgcccgtgttcgaggccgtgggccgcatctacgagctg
cgcctcatgatggactttgacggcaagaaccgcggctacgccttcgtcatgtactgccac
aagcacgaggccaagcgcgcagtgcgtgagctcaacaactacgagatccgcccgggccgc
ctgctcggcgtgtgctgcagcgtggacaactgccgcctcttcatcggcgggatccccaag
atgaagaagcgcgaggaaatcctggaggagattgccaaggtcaccgagggcgtgctggac
gtgatcgtctacgccagcgcggccgacaagatgaagaaccgcggcttcgccttcgtggag
tacgagagccaccgcgcggctgccatggctcgccgcaagctcatgcctggccgcatccag
ctgtggggccaccagatcgccgtggactgggccgaacctgagatcgacgtggacgaggac
gtgatggagaccgtgaagatcctctacgtgcgcaacctcatgatcgagaccaccgaggac
accatcaagaagagcttcggccagttcaaccccggctgcgtggagcgcgtcaagaagatc
cgcgactacgccttcgtgcacttcaccagccgcgaggatgccgtgcatgccatgaacaac
ctcaacggcactgagctggagggctcgtgcctggaggtcacgctggccaagcccgtggac
aaggagcagtactcgcgctaccagaaggcagccaggggcggcggcgcggctgaggcagcg
cagcagcccagctacgtgtactcctgcgacccctacacactggcctactacggctacccc
tacaacgcgctcattgggcccaacagggactactttgtgaaagcaggcagcataagaggc
cgagggcgaggtgcagctggcaacagagccccagggcctaggggttcctacctcggggga
tattctgctggtcgtggtatatatagccgatatcatgaagggaaaggaaagcagcaagaa
aaaggatatgaactggtgccgaatttggaaatccctaccgtcaacccagttgccattaaa
cctggtacagtagccatccctgccattggggctcagtattccatgtttccagcagctcca
gcccctaaaatgattgaagatggcaaaatccacacagtggagcacatgatcagccccatt
gctgtgcagccagacccagccagtgctgctgccgccgcagccgcggccgcagccgccgca
gccgctgtcattcccactgtgtcgacgccaccacctttccagggccgcccaataactcca
gtatacacggtggctccaaacgttcagagaattcctactgccgggatctacggggccagt
tacgtgccatttgctgctccagctacagccacgatcgccacactacagaagaacgcggca
gccgcggccgccatgtatggaggatacgcaggctacatacctcaggccttccctgctgct
gccattcaggtccccatccccgacgtctaccagacatactga

>gi568815594r:40325907_40538893|GENSCAN_predicted_peptide_8|131_aa
MIYRFTLTVMAIIKKTKPQVLVRMWRNWNPCALLVGMYNGAASVGKSMVVLQKYNHNKQK
YHMSQQLLLMHSARNEHKCCRSQMTKRTSSSGKHRNKMHTMCHRCGSEAYHLQKSTCGKC
GYIAKCKRKCN

>gi568815594r:40325907_40538893|GENSCAN_predicted_CDS_8|396_bp
atgatataccgcttcacactcactgtgatggcaattatcaaaaaaacaaaaccacaagtg
ttggtgagaatgtggagaaactggaacccttgtgcactgctggtgggaatgtataatggt
gcagcttctgtgggaaaaagtatggtggtgcttcaaaaatataatcataataaacagaag
taccacatgagccagcagcttctcctgatgcacagtgcaagaaatgaacataagtgctgc
agaagccaaatgacaaagagaacgtcatcgtctggaaagcatcgcaataagatgcacacg
atgtgccaccgctgtggctctgaagcctaccaccttcagaagtcaacctgtggcaaatgt
ggctacattgccaagtgcaagagaaagtgtaactga