GENSCAN 1.0	Date run:  7-Nov-116	Time: 19:37:57

Sequence gi568815594f:25562501_25776746 : 214246 bp : 45.19% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +  16257  16296   40                              -1.16
 1.01 Init +  50790  50879   90  2  0   92  113    14 0.249   3.60
 1.02 Term +  60775  61101  327  0  0   34   44   262 0.456  11.11
 1.03 PlyA +  61326  61331    6                               1.05

 2.03 PlyA -  61412  61407    6                               1.05
 2.02 Term -  85791  85522  270  0  0  -26   34   318 0.671  10.48
 2.01 Init -  87508  87506    3  1  0  113   81     0 0.544   1.80
 2.00 Prom -  90950  90911   40                              -4.46

 3.00 Prom +  91271  91310   40                              -6.16
 3.01 Init +  93206  93390  185  1  2   90  105    69 0.936   7.43
 3.02 Intr +  99636  99783  148  0  1   79   92    22 0.913   1.94
 3.03 Intr +  99998 100112  115  1  1  118  106    72 0.961  12.02
 3.04 Intr + 100205 100342  138  0  0   95   98   119 0.881  14.04
 3.05 Intr + 101702 101830  129  0  0  100   94    36 0.974   6.07
 3.06 Intr + 103628 103771  144  0  0   92   84   176 0.999  17.85
 3.07 Intr + 105380 105491  112  0  1   87  116    79 0.998  10.04
 3.08 Intr + 107147 107342  196  2  1   86   93   266 0.999  26.32
 3.09 Intr + 108238 108333   96  0  0   83  102    87 0.998   9.81
 3.10 Intr + 109101 109221  121  2  1   54   82   152 0.579  11.27
 3.11 Intr + 110587 110754  168  2  0  103   82   157 0.998  16.52
 3.12 Intr + 111796 111912  117  2  0  116   97    88 0.997  12.94
 3.13 Intr + 112005 112129  125  1  2  119   71   141 0.999  15.80
 3.14 Term + 113635 114249  615  0  0  130   50   894 0.985  84.26
 3.15 PlyA + 115162 115167    6                               1.05

 4.00 Prom + 116296 116335   40                              -5.06
 4.01 Init + 116350 116483  134  0  2   83   25    93 0.678   2.11
 4.02 Term + 119746 119929  184  1  1   55   38   153 0.676   4.02
 4.03 PlyA + 120110 120115    6                               1.05

 5.00 Prom + 124613 124652   40                              -0.56
 5.01 Init + 131900 131962   63  1  0   42   96    58 0.527   3.15
 5.02 Term + 136995 137015   21  2  0  124   48    16 0.530  -0.49
 5.03 PlyA + 137927 137932    6                               1.05

 6.11 PlyA - 138440 138435    6                               1.05
 6.10 Term - 151012 150927   86  2  2   90   37   102 0.883   3.12
 6.09 Intr - 159430 159325  106  1  1   21  106   104 0.682   5.29
 6.08 Intr - 163643 163559   85  1  1   91   93    13 0.126   1.92
 6.07 Intr - 186430 186399   32  1  2  100   52    50 0.002  -0.47
 6.06 Intr - 195290 195188  103  1  1   84   82    28 0.545   1.98
 6.05 Intr - 196568 196441  128  2  2   69  105    57 0.876   4.98
 6.04 Intr - 202935 202826  110  1  2   60   97   160 0.715  14.10
 6.03 Intr - 204336 204165  172  0  1  100   52   -12 0.342  -4.08
 6.02 Intr - 205330 205240   91  0  1   54  100    56 0.772   3.40
 6.01 Intr - 213860 213777   84  1  0  121  103   126 0.993  16.34

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init + 179873 179940   68  1  2   86   96    43 0.900   3.45
S.002 Term + 180353 180416   64  2  1   89   47    76 0.870   0.96


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815594f:25562501_25776746|GENSCAN_predicted_peptide_1|138_aa
MHSYLLCPEFIPSGEFLVLLTSRMKPRTCTIIQWCTNQKDNPPPPPEADENEEKRTDAIP
AWDQKFLKIDPGTLFEVILAANYLDIKGLLDVPCKTVAYLIKGKAPEEICTNRLPLIPKL
TLLEEAQIPKENQWCEET

>gi568815594f:25562501_25776746|GENSCAN_predicted_CDS_1|417_bp
atgcactcctacctactgtgtccggaatttattccttccggtgagttcttggtcttgctg
acttcaagaatgaagccacggacctgcacgataattcagtggtgcaccaaccaaaaggat
aaccctcctcctcctccagaggctgatgagaatgaagaaaagcgaacagatgctatccct
gcttgggaccaaaaattcctgaaaattgacccaggaacactttttgaagtcattttggct
gcaaactacttagacatcaaaggtttgcttgatgttccatgcaagactgttgcctatttg
atcaaggggaaggctcctgaggagatttgcacaaacaggcttccgttgataccaaaactg
actttactggaggaagcccagatacccaaagagaaccagtggtgtgaagagacatga

>gi568815594f:25562501_25776746|GENSCAN_predicted_peptide_2|90_aa
MLEAASELETASELETVSELETASELEIVSELETASELEIVSELEIVSELETASELEIAS
ELETASELEIASELETASELETASVRTGSH

>gi568815594f:25562501_25776746|GENSCAN_predicted_CDS_2|273_bp
atgctggaggccgcttcagagctggagaccgcttcagagctggagactgtttcagagctg
gagaccgcttcagagctggagattgtttcagagctggagaccgcttcagagctggagatt
gtttcagagctggagatcgtttcagagctggagaccgcttcagagctggagatcgcttca
gagctggagaccgcttcagagctggagatagcttcagagctggagaccgcttcagagctg
gagaccgcttcagtcagaactggaagccactag

>gi568815594f:25562501_25776746|GENSCAN_predicted_peptide_3|802_aa
MGSLRRQVGSAPAAAAAGGPGMCEGRDDSGQPLCATPSPYIPGALRSTWPPPPAQHLRRE
RCAGITGVSHGARCTLLLTEGESQDKNKFTRLKVVHAANSTLYEVVCFSDWTMAPWPELG
DAQPNPDKYLEGAAGQQPTAPDKSKETNKTDNTEAPVTKIELLPSYSTATLIDEPTEVDD
PWNLPTLQDSGIKWSERDTKGKILCFFQGIGRLILLLGFLYFFVCSLDILSSAFQLVGGK
MAGQFFSNSSIMSNPLLGLVIGVLVTVLVQSSSTSTSIVVSMVSSSLLTVRAAIPIIMGA
NIGTSITNTIVALMQVGDRSEFRRAFAGATVHDFFNWLSVLVLLPVEVATHYLEIITQLI
VESFHFKNGEDAPDLLKVITKPFTKLIVQLDKKVISQIAMNDEKAKNKSLVKIWCKTFTN
KTQINVTVPSTANCTSPSLCWTDGIQNWTMKNVTYKENIAKCQHIFVNFHLPDLAVGTIL
LILSLLVLCGCLIMIVKILGSVLKGQVATVIKKTINTDFPFPFAWLTGYLAILVGAGMTF
IVQSSSVFTSALTPLIGIGVITIERAYPLTLGSNIGTTTTAILAALASPGNALRSSLQIA
LCHFFFNISGILLWYPIPFTRLPIRMAKGLGNISAKYRWFAVFYLIIFFFLIPLTVFGLS
LAGWRVLVGVGVPVVFIIILVLCLRLLQSRCPRVLPKKLQNWNFLPLWMRSLKPWDAVVS
KFTGCFQMRCCCCCRVCCRACCLLCDCPKCCRCSKCCEDLEEAQEGQDVPVKAPETFDNI
TISREAQGEVPASDSKTECTAL

>gi568815594f:25562501_25776746|GENSCAN_predicted_CDS_3|2409_bp
atgggttcattaaggcggcaggtaggcagtgccccggcggcggctgcggcaggcggtcct
ggaatgtgcgaggggcgtgatgacagcggccagcctctttgcgcaacaccttcgccatat
atacccggggcgctgcgctccacctggccgccgcctccagcccagcacctgcggagggag
cgctgtgctgggattacaggcgtgagccacggtgcccgttgcaccctgcttttgactgaa
ggagagagtcaagacaaaaacaagtttacgagattaaaggtggtacatgcagctaactca
acactgtacgaggtagtttgctttagcgactggaccatggctccctggcctgaattggga
gatgcccagcccaaccccgataagtacctcgaaggggccgcaggtcagcagcccactgcc
cctgataaaagcaaagagaccaacaaaacagataacactgaggcacctgtaaccaagatt
gaacttctgccgtcctactccacggctacactgatagatgagcccactgaggtggatgac
ccctggaacctacccactcttcaggactcggggatcaagtggtcagagagagacaccaaa
gggaagattctctgtttcttccaagggattgggagattgattttacttctcggatttctc
tactttttcgtgtgctccctggatattcttagtagcgccttccagctggttggaggaaaa
atggcaggacagttcttcagcaacagctctattatgtccaaccctttgttggggctggtg
atcggggtgctggtgaccgtcttggtgcagagctccagcacctcaacgtccatcgttgtc
agcatggtgtcctcttcattgctcactgttcgggctgccatccccattatcatgggggcc
aacattggaacgtcaatcaccaacactattgttgcgctcatgcaggtgggagatcggagt
gagttcagaagagcttttgcaggagccactgtccatgacttcttcaactggctgtccgtg
ttggtgctcttgcccgtggaggtggccacccattacctcgagatcataacccagcttata
gtggagagcttccacttcaagaatggagaagatgccccagatcttctgaaagtcatcact
aagcccttcacaaagctcattgtccagctggataaaaaagttatcagccaaattgcaatg
aacgatgaaaaagcgaaaaacaagagtcttgtcaagatttggtgcaaaacttttaccaac
aagacccagattaacgtcactgttccctcgactgctaactgcacctccccttccctctgt
tggacggatggcatccaaaactggaccatgaagaatgtgacctacaaggagaacatcgcc
aaatgccagcatatctttgtgaatttccacctcccggatcttgctgtgggcaccatcttg
ctcatactctccctgctggtcctctgtggttgcctgatcatgattgtcaagatcctgggc
tctgtgctcaaggggcaggtcgccactgtcatcaagaagaccatcaacactgatttcccc
tttccctttgcatggttgactggctacctggccatcctcgtcggggcaggcatgaccttc
atcgtacagagcagctctgtgttcacgtcggccttgacccccctgattggaatcggcgtg
ataaccattgagagggcttatccactcacgctgggctccaacatcggcaccaccaccacc
gccatcctggccgccttagccagccctggcaatgcattgaggagttcactccagatcgcc
ctgtgccactttttcttcaacatctccggcatcttgctgtggtacccgatcccgttcact
cgcctgcccatccgcatggccaaggggctgggcaacatctctgccaagtatcgctggttc
gccgtcttctacctgatcatcttcttcttcctgatcccgctgacggtgtttggcctctcg
ctggccggctggcgggtgctggttggtgtcggggttcccgtcgtcttcatcatcatcctg
gtactgtgcctccgactcctgcagtctcgctgcccacgcgtcctgccgaagaaactccag
aactggaacttcctgccgctgtggatgcgctcgctgaagccctgggatgccgtcgtctcc
aagttcaccggctgcttccagatgcgctgctgctgctgctgccgcgtgtgctgccgcgcg
tgctgcttgctgtgtgactgccccaagtgctgccgctgcagcaagtgctgcgaggacttg
gaggaggcgcaggaggggcaggatgtccctgtcaaggctcctgagacctttgataacata
accattagcagagaggctcagggtgaggtccctgcctcggactcaaagaccgaatgcacg
gccttgtag

>gi568815594f:25562501_25776746|GENSCAN_predicted_peptide_4|105_aa
MGHQQLYWSHPKKFGQGSRSCRVYSNQHGLIRKYGLNKCRQCFCQILWIRDLEQKQAQHP
ASTVTRLANEATIKDTASILPDWWGQQNNPCQKRPALIADHGVNK

>gi568815594f:25562501_25776746|GENSCAN_predicted_CDS_4|318_bp
atgggtcaccagcagctgtactggagccacccaaaaaaattcggccagggttctcgttct
tgtcgtgtctattcaaaccagcacggtctgatccggaaatatggcctcaataagtgccgc
caatgtttctgtcaaatcttgtggataagagacctggagcagaaacaggcccagcatcca
gccagcactgtcaccagacttgcaaatgaagccaccataaaggatacagccagcatcctg
cctgactggtggggccagcagaacaacccctgccaaaaacgcccagccctgattgctgac
catggagtaaacaaataa

>gi568815594f:25562501_25776746|GENSCAN_predicted_peptide_5|27_aa
MYNTKSEPDVSYALWVIMMCQIQEIIS

>gi568815594f:25562501_25776746|GENSCAN_predicted_CDS_5|84_bp
atgtacaacaccaagagtgaacctgatgtcagctatgctctttgggtgataatgatgtgt
cagatccaggagataatcagctaa

>gi568815594f:25562501_25776746|GENSCAN_predicted_peptide_6|332_aa
XWAKHVAEKNGYLGHVIRKGLNAYLEGSWHEALLYYVLAAETGIEVSQTNLAHICEERPA
IRGTGRRLQDGRRSPSTSTFVSLLWTVSLAVATFPWFQPLPGSSTLFDLSTRLWVSAYLK
MGDLYYYGHQNQSQDLELSVQMYAQAALDGDSQGFFNLALLIEEGTIIPHHILDFLEIDS
TLHSNNISILQELYERCWSHSNEESFSPCSLAWLYLHLRLLWGAILHSALKSVGIHDLFC
RKWMRTDTLTWYFHQRRSNQGDSILNRGKQSHGKKARKHNCANTFEDVHHVTSTEIPLAK
ASHMESGEHNDEDDKIIIIIIIHHHDHHLDGK

>gi568815594f:25562501_25776746|GENSCAN_predicted_CDS_6|999_bp
nnatgggcaaaacatgtagctgagaaaaatggctacttgggccatgtcatccgcaaaggc
ctcaatgcctacctggaaggttcatggcatgaagctttgctgtattatgttttagcagca
gaaactggaattgaagtgtcacagacaaatttagcacacatctgtgaggagaggccagca
ataagaggcactggcagaagattgcaggatgggagaagaagtccaagtacttctaccttt
gtctctctgctttggactgtgtctctggcagtggctacatttccatggttccagcccctg
cctggcagctccaccctctttgatctcagcaccaggctctgggtctctgcatatttgaag
atgggagacctttactactatggccaccaaaaccagtcacaagacctggagttgtctgtg
cagatgtacgcccaagccgccctggatggagactcccagggattttttaacctggccctg
ctaatcgaggaaggtacgataatcccacaccatatcttggatttcttggaaattgactca
actctccattctaataacatctccattctccaggaactgtacgaaaggtgctggagccac
agtaacgaggagtccttcagcccctgctccttggcctggctttacctgcacttgcggctt
ctctggggtgctatcctgcactcagccctgaagagtgttggaatccacgacctcttctgt
aggaagtggatgagaactgatactctgacctggtactttcatcagaggcgttcaaaccag
ggggactccatcttgaataggggcaagcaatctcatggcaaaaaggctcgaaagcacaac
tgtgcaaacacatttgaagacgtccatcatgtcacttccactgagatcccactggcgaaa
gcaagtcacatggagtcaggagaacataatgatgaagatgataaaataatcatcatcatc
atcattcatcatcatgatcatcatcttgatggcaaatag