GENSCAN 1.0	Date run:  6-Nov-116	Time: 17:35:13

Sequence gi568815595r:196371822_196603173 : 231352 bp : 43.85% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   9703  10012  310  0  1   99  -54   251 0.006   9.48
 1.02 Term +  12316  13151  836  2  2   53   36   341 0.008  18.55
 1.03 PlyA +  14550  14555    6                               1.05

 2.06 PlyA -  16183  16178    6                               1.05
 2.05 Term -  17407  17339   69  1  0   58   29    50 0.053  -5.96
 2.04 Intr -  20104  19992  113  2  2   72   98    92 0.207   8.70
 2.03 Intr -  31198  31131   68  0  2   84  103    48 0.185   4.45
 2.02 Intr -  60068  59963  106  0  1  120   80    32 0.085   4.87
 2.01 Init -  60719  60506  214  2  1   62  111   288 0.946  25.41
 2.00 Prom -  74281  74242   40                              -5.16

 3.14 PlyA -  76544  76539    6                               1.05
 3.13 Term -  87253  87164   90  1  0   83   39    84 0.487   0.72
 3.12 Intr -  92091  91951  141  0  0  103   52    18 0.252   0.25
 3.11 Intr - 100951 100079  873  1  0  132   63   298 0.442  23.23
 3.10 Intr - 103491 103410   82  2  1   67   95    35 0.511   1.74
 3.09 Intr - 112070 111949  122  2  2   60  100    22 0.479  -0.11
 3.08 Intr - 115757 115578  180  2  0   14   87   164 0.958   8.96
 3.07 Intr - 116862 116786   77  1  2   44  100    83 0.416   4.33
 3.06 Intr - 131336 131052  285  0  0   29   92   287 0.100  20.51
 3.05 Intr - 135024 134988   37  0  1   81   46    58 0.091  -1.26
 3.04 Intr - 136510 136150  361  0  1   52   91   192 0.152  11.12
 3.03 Intr - 137848 137699  150  0  0  120   81   119 0.992  13.68
 3.02 Intr - 144888 144811   78  2  0   83   38    88 0.729   1.97
 3.01 Init - 146301 146177  125  0  2   88   66    51 0.511   2.55
 3.00 Prom - 150230 150191   40                              -4.56

 4.06 PlyA - 152286 152281    6                               1.05
 4.05 Term - 157226 156915  312  2  0   65   49   165 0.044   5.30
 4.04 Intr - 172618 172583   36  1  0   91   76    29 0.105   0.46
 4.03 Intr - 174329 174130  200  0  2   75   82    76 0.644   4.77
 4.02 Intr - 182986 182473  514  1  1   52   22   159 0.055  -1.76
 4.01 Init - 189654 189175  480  0  0   64   64   219 0.527  12.49
 4.00 Prom - 191538 191499   40                              -3.26

 5.00 Prom + 195762 195801   40                              -4.06
 5.01 Init + 197164 197481  318  0  0   93  100   558 0.778  52.84
 5.02 Intr + 205632 205988  357  2  0   87   94   257 0.996  21.65
 5.03 Term + 212312 212497  186  1  0   94   48   148 0.966   8.89
 5.04 PlyA + 217219 217224    6                               1.05

 6.00 Prom + 217331 217370   40                              -2.76
 6.01 Init + 224545 224639   95  0  2   47   86    67 0.226   2.25
 6.02 Term + 226369 226834  466  1  1   57   43   146 0.100   1.49
 6.03 PlyA + 230158 230163    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +   9703  10041  339  0  0   99   34   266 0.946  18.33
S.002 Sngl + 164711 164881  171  1  0   83   36   164 0.929   5.53


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:196371822_196603173|GENSCAN_predicted_peptide_1|381_aa
MGRNQSRKDENSKNQSASSPPKDRNSLPATEQRWMENDFDKLTEVVFRRSVITNFSKLKE
DVRTHRKEAKHLEKRLDELLTRINSVEKNLNDLMELKTTARELQIQTTTREYYKHLYANK
LENLEEMGKFLDTYTLPRLNQEEVESLNRPITGSEIEAIINSLTTKKSPGPDGFTAKFYQ
RYKEELVPFLLKLFQSTEKKGILPNSFYEANIILIPKPGRDTTKKENFRPISLMNIDAKI
LNKILANRIQQHMKKLIHHDQVGFIPGMQGWFNICKSINIIHHINRTNDKNHMIISIDAE
KTFNKIQQPFTLKILNKLGIDGTYLKIIRDIYGKPTANTILNGQKLEAFPLKTGTRQGCP
LSPLLFNILLEVLARAIRQEK

>gi568815595r:196371822_196603173|GENSCAN_predicted_CDS_1|1146_bp
atggggagaaaccagagcagaaaagatgaaaattctaaaaatcagagcgcctcttctcct
ccaaaggatcgcaactccttgccagcaacggaacaacgctggatggagaatgactttgac
aagttgacagaagtagtcttcagaaggtcggtaataacaaacttctccaagctaaaggag
gatgttcgaacccatcgcaaggaagctaaacaccttgaaaaaagattagatgaattgcta
actagaataaacagtgtagagaagaacttaaatgacctgatggagctgaaaaccacagca
cgagaacttcaaatacaaactaccaccagagaatactataaacacctctatgcaaataaa
ctagaaaatctagaagaaatgggcaaattcctggacacatacaccctcccaagactaaac
caggaagaagttgaatctctgaacagaccaataacaggctctgaaattgaggcaataatt
aacagcctaacaaccaaaaaaagtccaggaccagacggattcacagccaaattctaccag
aggtacaaagaggagctggtaccattccttctgaaactattccaatcaacagaaaaaaag
ggaatcctccctaactcattttatgaggccaacatcatcctgataccaaagcctggcaga
gacacaacaaaaaaggagaattttagaccaatatccctgatgaacattgatgcgaaaatc
ctcaataaaatactggcaaaccgaatccagcagcacatgaaaaagcttatccaccatgat
caagtcggcttcatccctgggatgcaaggttggttcaacatatgcaaatcaataaacata
atccatcatatcaacagaaccaacgacaaaaaccacatgattatctcaatagatgcagaa
aagaccttcaacaaaattcaacagcccttcacgctaaaaattctcaataaactaggtatt
gatggaacgtatctcaaaataataagagatatttatggcaaacccacagccaataccata
ctgaatgggcaaaaactggaagcattccctttgaaaaccggcacaagacaaggatgccct
ctctcaccactcctattcaacatactgttggaagttctggccagggcaatcaggcaagag
aaataa

>gi568815595r:196371822_196603173|GENSCAN_predicted_peptide_2|189_aa
MRLRRPLGTGGAGLEGRSMRLRTPHGEVGEGSPCVSVLLFGGGGGGKMAAHGGSAASSAL
KGLIQQFTTITGHSAPVPGLPFPFLGPSEPSPWPWRVRALPPSRQGREEVRAPIPQKQEI
LVEPEPLFGVRQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFETYSGDTTAIERENS
SNIKGRKGS

>gi568815595r:196371822_196603173|GENSCAN_predicted_CDS_2|570_bp
atgcgcctgcgcagaccgctggggacgggaggggcggggctcgaggggcggtcaatgcgc
ctgcgcacaccgcacggcgaagtgggggagggcagtccgtgtgtgtctgtgttgttgttc
ggcggcggcggcggcggtaagatggctgcccacgggggctccgcggcgtcctcggcgctg
aaggggttaattcaacagttcaccaccattaccggtcattctgccccggtccccggcctg
cccttcccctttctgggcccctcggagccatcgccgtggccctggcgggttcgggccctc
ccgccttcacggcaaggccgagaagaagttcgtgccccaattcctcaaaagcaggaaata
ctggtggaaccagaaccattatttggtgttcggcaagaacaagaattaagaaatggagga
gctatcgataagaaattaactacccttgcagatctattccggccacccattgatttgatg
cataaaggcagctttgaaacatattctggtgatactacagccattgagagagagaatagc
agcaatattaaaggcagaaaaggatcttag

>gi568815595r:196371822_196603173|GENSCAN_predicted_peptide_3|866_aa
MPVHVTSTWLAAMISAHVATKKKQQELPYWVNLALSHQHLHIMFLEDKDFALLITILPVP
GIVLLIHSVDHKLQALETQFKELDFTKDNLMQKFEHHSKALASQAAQDEMWTAVRALQLT
SMELNILYSYVIEVLICLHTRVLEKLPDLVRGLPTLASVLRRKVKNKRVRVVWESILEEC
GLQEGDITALCTFFIARGNKAEHYTAKVRQMYIRDVTFLITNMVKNQALQDSLLRAVQSW
DNNSELIKFGNAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCR
RRVSSWTRYHTRRNSLVNVELWTIIQKHYPRECKLRASGQESEEVADDYQPVRLLSKPGE
LRREYEEEISKVAAERRASEEEENKASEEYIQRLLAEEEEEEKRQAEKRRRAMEEQLKSD
EELARKLSIDINNFCEGSISASPLNSRKSDPVTPKSEKKSKNKQRNTGDIQKYLTPKSQF
GSASHSEAVQEVRKDSVSKDIDSSDRKSPTGQDTEIEDMPTLSPQISLGVGEQGADSSIE
SPMPWLCACGAEWYHEGNVKTRPSNHGKELCVLSHERPKTRVPYSKETAVMPCGRTESGC
APTSGVTQTNGNNTGETENEESCLLISKEISKRKNQESSFEAVKDPCFSAKRRKVSPESS
PDQEETEINFTQKLIDLEHLLFERHKQEEQDRLLALQLQKEVDKEQMVPNRQKGSPDEYH
LRATSSPPDKVLNGQRKNPKDGNFKRQTHTKHPTPERGSRDKNRQVSLKMQLKQSVNRRK
MPNSTRDHCKMYPGSQKTLAPEETDSQKYLVTYSSSHTSSAYVVWIKIWKTDTKNLEEIK
PSDIITKFPELLEGYNPEIIEHQDKI

>gi568815595r:196371822_196603173|GENSCAN_predicted_CDS_3|2601_bp
atgcctgtacatgttacttctacctggctggctgccatgatatctgcacatgtggcaaca
aagaaaaagcagcaggaactgccatattgggtgaacctggctcttagccaccagcattta
catattatgttccttgaggacaaggatttcgccttacttatcactatattaccagtgcct
ggaatagtgctgctcatccattcagtagaccacaaactccaagcgttagaaacacagttc
aaagaactagacttcaccaaggataacctgatgcagaaattcgaacatcatagtaaggct
ttggcaagccaagcagcccaagatgagatgtggacagcagttcgggcactccagctcact
tcaatggaattgaatattttatacagctacgtcattgaagtacttatctgcttgcatact
cgtgtgcttgagaagctgccagacctggtgagaggtcttccaaccttagcctctgtactc
agaagaaaagttaagaacaagcgcgttagagttgtatgggagtccatactggaggagtgt
gggctgcaagaaggagacatcacagcactttgtaccttctttattgcacgtggtaacaag
gcagaacactatactgctaaagtgaggcagatgtacatcagggatgtcacgttcctaatt
actaacatggtaaagaaccaggctctgcaggacagtttgctgagggctgtgcagtcatgg
gacaacaactcagaactcatcaaattcgggaacgccatcccctcgctgtccgagtgccag
tgcgggatctgcatggaaatcctcgtggagcccgtcaccctcccgtgtaaccacacgctg
tgtaaaccgtgcttccagtcgaccgtcgaaaaggcgagtttatgctgtcccttctgtcgc
cgccgggtatcgtcgtggactcggtaccatacccgaagaaattctctcgtcaacgtggaa
ctgtggacgataattcaaaaacactatcccagggagtgcaagcttagagcgtctggccaa
gaatcagaggaagtggctgatgactatcagccagttcgtctgctcagtaaacctggggaa
ctgagaagagaatatgaagaggaaataagcaaggtggcggcagagcgacgggccagcgag
gaagaagaaaacaaagccagtgaagaatacatacagaggttgttggcagaggaggaagaa
gaggaaaaaagacaggcagaaaaaaggcgaagagcgatggaagaacaactgaaaagtgat
gaggaactggcaagaaagctaagcattgatattaacaatttctgtgagggaagtatctcg
gcttctcccttgaattccagaaaatctgatccagttacacccaagtctgaaaagaaaagt
aagaacaaacaaagaaacactggagatattcagaagtatttgacaccgaaatctcagttt
gggtcagcctcacactctgaagctgtacaagaagtcaggaaagactccgtatctaaggac
attgacagtagtgataggaaaagcccaacagggcaagacacagaaatagaagatatgccg
acactttctccacagatatcccttggagttggagaacaaggtgcagattcttcaatagag
tcccctatgccatggttatgtgcctgtggtgccgaatggtaccatgaaggaaacgtcaaa
acaagaccaagcaatcatgggaaagagttatgtgtcttaagtcacgagcgacctaaaacc
agagttccctactcgaaagaaactgcagttatgccttgtggcagaacagaaagtgggtgc
gcccccacatcaggggtgacacagacaaatggaaacaacacaggtgagacagaaaatgaa
gagtcgtgcctactgatcagtaaggagatttccaaaagaaaaaaccaagaatcttccttt
gaagcagtcaaggatccatgcttttctgcaaaaagaagaaaagtgtcccccgaatcttcc
ccagatcaagaggaaacagaaataaactttacccaaaaactgatagatttggagcatcta
ctgtttgagagacataaacaagaagaacaggacaggttattggcattacaacttcagaag
gaggtggataaagagcaaatggtgccaaaccggcaaaaaggatccccagatgagtatcac
ttacgcgctacatcctcccctccagacaaagtgctaaatggacagaggaagaatcccaaa
gatgggaacttcaaaaggcaaactcacacaaagcatccaacaccagagagaggctcaagg
gacaaaaataggcaagtgtctttaaagatgcagttgaagcagtcagttaatagaagaaag
atgccaaattctactagagatcactgtaagatgtatcctgggtcacaaaagaccttggct
ccagaagaaactgattctcagaaataccttgtgacttactcaagttctcatactagctct
gcgtatgtggtgtggataaaaatttggaaaacagacactaaaaacttggaggaaattaag
ccatcagacatcatcactaaattcccagagctcctagaaggatacaatccagaaataata
gaacaccaggataagatttga

>gi568815595r:196371822_196603173|GENSCAN_predicted_peptide_4|513_aa
MAVKWTGGHSSPVLCLNASKEGLLASGAEGGDLTAWGEDGTPLGHTRFQGADDVTSVLFS
PSCPTKLYASHGETISVLDVRSLKDSLDHFHVNEEEINCLSLNQTENLLASADDSGAIKI
LDLENKKVIRSLKRHSNICSSVAFRPQRPQSLVSCGLDMQVMLWSLQKARPLWITNLQED
ETEEMEGPQSPGQLLNPALAHSISVASCGNIFSCGAEDGKVRIFRVMGVKCEQELGFKGH
TSGVSQVCFLPESYLLLTGGNDGKITLWDANSEVEKKQKSPTKRTHRKKPKRGTCTKQGG
NTNASVTDEEEHGNILPKLNIEHGEKVNWLLDLSKQKLNLWGNVVSNIKTQDDMQENWEG
YRTEVFLYRRGLGRRQQFHTLTGQVTPMRQGSNQIETQAYTFMANRFLAKLSIPGTSVLS
SAAIASRSATGVAGSRLRMEEAAASAPWRLGPAPLPRPPPPPSSPRRRPGRSEPDRAEPP
RRRCPEWKCGLRSGRRCWEPDGARRRDTAVLRT

>gi568815595r:196371822_196603173|GENSCAN_predicted_CDS_4|1542_bp
atggcagtcaagtggacgggtgggcattcttctcctgtcctctgcctgaatgcaagtaaa
gaagggctgctggcttctggagcagagggcggagatctcacggcttggggtgaagatgga
actccattaggacacacgcggttccaaggggctgatgatgttaccagtgtcttattttct
ccctcctgtcccaccaagctctatgcctcacatggagaaaccattagtgtactggatgtc
aggtccctcaaagattccttggaccattttcatgtgaatgaagaagaaatcaattgtctt
tcattgaatcaaacggaaaacctgctggcttctgctgacgactctggggcaatcaaaatc
ctagacttggaaaacaagaaagttatcagatccttgaagagacattccaatatctgctcc
tcagtggcttttcggcctcagaggcctcagagcctggtgtcatgtggactggatatgcag
gtgatgctgtggagtcttcaaaaagcccgaccactctggattacaaatttacaggaggat
gaaacagaagaaatggaaggcccacagtcacctggtcagctcttaaaccctgccctagcc
cattctatctctgtggcttcgtgtggtaatatttttagttgtggtgcagaagatggtaag
gttcgaatctttcgggtgatgggagttaagtgtgaacaggaactgggatttaagggccac
acttcaggggtatcccaggtctgctttctcccagaatcctatttgctgcttactggaggg
aatgatgggaagatcacgttgtgggatgcaaacagtgaagttgagaaaaaacagaagagt
cccacaaaacgtacccacaggaagaaacctaaaagaggaacttgcaccaagcagggtgga
aatactaacgcttcagtaacagatgaggaagaacatggcaacattttaccaaagctaaat
attgaacatggagaaaaagtgaactggctcttggatctttcaaagcagaaattaaacctc
tggggaaatgttgtttctaatataaaaacacaggatgatatgcaggagaactgggaaggc
tacaggactgaagtcttcctgtacaggagaggcttggggaggaggcagcagttccatact
ctcactggtcaggtgacacccatgcgtcaggggagcaaccagattgaaactcaggcttac
acgttcatggcaaacagatttttagcaaagctctccattccggggaccagtgttctgagc
tcggccgccatcgcctcacgctcagcgacgggcgtggccgggagccgcctgcggatggag
gaagcggccgccagcgccccctggaggctcgggccggctccactcccgcggcccccgcca
ccgcccagctccccgcggaggcgcccaggccggtctgagcccgacagggcggaaccaccg
cggcggcgctgccctgagtggaaatgcggcctccgcagcgggagaagatgctgggagccg
gatggggcccggaggcgcgacaccgcagttctccgtacttga

>gi568815595r:196371822_196603173|GENSCAN_predicted_peptide_5|286_aa
MAAPAPGAGAASGGAGCSGGGAGAGAGSGSGAAGAGGRLPSRVLELVFSYLELSELRSCA
LVCKHWYRCLHGDENSEVWRSLCARSLAEEALRTDILCNLPSYKAKIRAFQHAFSTNDCS
RNVYIKKNGFTLHRNPIAQSTDGARTKIGFSEGRHAWEVWWEGPLGTVAVIGIATKRAPM
QCQGYVALLGSDDQSWGWNLVDNNLLHNGEVNGSFPQCNNAPKYQIGERIRVILDMEDKT
LAFERGYEFLGVAFRGLPKVCLYPAVSAVYGNTEVTLVYLGKPLDG

>gi568815595r:196371822_196603173|GENSCAN_predicted_CDS_5|861_bp
atggcggcgccggccccgggggctggggcagcctcgggcggcgctggctgtagcggcggc
ggcgcgggcgcgggcgcgggctcgggctctggggccgcgggggccgggggccggctgccc
agccgggtgctggagttggtgttctcttacctggagctgtccgagctgcggagctgcgcc
ctggtgtgcaagcactggtaccgctgcctgcacggcgatgagaacagcgaggtgtggcgg
agcctgtgcgcccgcagcctggcagaagaggctctgcgcacggacatcctgtgcaacctg
cccagctacaaggccaagatacgtgcttttcaacatgccttcagcactaatgactgctcc
aggaatgtctacattaagaagaatggctttactttacatcgaaaccccattgctcagagc
actgatggtgcaaggaccaagattggtttcagtgagggccgccatgcatgggaagtgtgg
tgggagggccctctgggcactgtggcagtgattggaattgccacaaaacgggcccccatg
cagtgccaaggttatgtggcattgctgggcagtgatgaccagagctggggctggaatctg
gtggacaataatctactacataatggagaagtcaatggcagttttccacagtgcaacaac
gcaccaaaatatcagataggagaaagaattcgagtcatcttggacatggaagataagact
ttagcttttgaacgtggatatgagttcctgggggttgcttttagaggacttccaaaggtc
tgcttatacccagcagtttctgctgtatatggcaacacagaagtgactttggtttacctt
ggaaaacctttggacggatga

>gi568815595r:196371822_196603173|GENSCAN_predicted_peptide_6|186_aa
MRNSTFEDSPEEKRQRRLKGVKRKKDTEGRASAGTVSVSGIGGFLVSLTSRLKPRTLAVS
VTALKGARLEFVPSDVRMCSEFFLSGGLQTFAVSVTALKAAHLELLVPPAGLVVSLASGV
KLQTFVVSVTAHKKQRGPSEQQQDLLQKAKEQSFHTMEGDRNGLPLLARAACFYSLIWPH
PHPVDW

>gi568815595r:196371822_196603173|GENSCAN_predicted_CDS_6|561_bp
atgaggaatagcacatttgaggactccccagaagaaaaacgacaaaggaggctgaaagga
gtgaagaggaaaaaagatacagaggggagagcaagcgcgggtactgttagtgtgtctgga
attggtgggttcttggtctcactgacttcaagactgaagccgcggaccctcgcggtgagt
gttacagctcttaagggcgcgcgtctggagtttgttccttctgatgttcggatgtgttcg
gagttttttctttctggtgggctgcagactttcgcggtgagtgttacagctcttaaagcg
gcgcatctggagttgcttgttcctcccgctgggctcgtggtctcactggcttcaggagtg
aagctgcagacttttgtggtgagtgttacagctcataaaaagcagcgtggacccagtgag
cagcagcaagatttattgcaaaaagccaaagaacagagcttccacacaatggaaggggac
cggaacggcttgccgctgctggctcgggcagcctgcttttattctcttatctggccccac
ccacatcctgttgattggtag