GENSCAN 1.0	Date run:  8-Nov-116	Time: 02:05:31

Sequence gi568815595r:138845595_139046722 : 201128 bp : 45.42% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1603   1729  127  0  1  104   60    48 0.520   3.92
 1.02 Term +  11854  11885   32  2  2  136   50    18 0.743   0.82
 1.03 PlyA +  15112  15117    6                               1.05

 2.00 Prom +  15706  15745   40                              -3.66
 2.01 Init +  19240  19242    3  0  0   88  115     0 0.554   2.70
 2.02 Intr +  30325  30453  129  0  0   96   78    33 0.518   3.99
 2.03 Intr +  54007  54099   93  0  0  115   -4    64 0.009   0.06
 2.04 Intr +  90273  90669  397  2  1   26   80   206 0.213   7.75
 2.05 Intr +  92201  92387  187  0  1   46  105   124 0.623   8.65
 2.06 Intr +  92563  92710  148  1  1   29   93    47 0.308  -0.46
 2.07 Intr +  93007  93208  202  0  1   45   56   146 0.461   5.96
 2.08 Term +  98378  98586  209  0  2    1   36   147 0.140  -1.70
 2.09 PlyA +  98614  98619    6                               1.05

 3.06 PlyA -  98655  98650    6                               1.05
 3.05 Term - 101179  99998 1182  1  0   52   54  1732 0.872 157.97
 3.04 Intr - 101937 101803  135  0  0   89   49    60 0.720   2.96
 3.03 Intr - 104681 104517  165  2  0   71   56    77 0.802   2.96
 3.02 Intr - 105946 105830  117  1  0   72   98   137 0.782  13.76
 3.01 Init - 107384 107289   96  2  0   60   77    67 0.776   3.11
 3.00 Prom - 107888 107849   40                              -5.06

 4.03 PlyA - 108284 108279    6                               1.05
 4.02 Term - 115234 114717  518  2  2  -23   38   403 0.904  18.68
 4.01 Init - 127596 127422  175  0  1   52   95    72 0.212   1.85
 4.00 Prom - 140559 140520   40                              -4.46

 5.03 PlyA - 141115 141110    6                               1.05
 5.02 Term - 142474 142377   98  2  2  124   47    87 0.862   6.33
 5.01 Init - 152370 152313   58  0  1   62   97    40 0.556   3.77
 5.00 Prom - 158584 158545   40                              -3.66

 6.06 PlyA - 158882 158877    6                              -0.45
 6.05 Term - 160949 159874 1076  0  2   -4   43  1028 0.676  81.39
 6.04 Intr - 175171 174341  831  2  0   29   30   868 0.001  66.47
 6.03 Intr - 178330 178200  131  0  2   56   40    67 0.162  -0.96
 6.02 Intr - 182551 182406  146  1  2   75   39   117 0.102   4.58
 6.01 Init - 182807 182607  201  2  0   60   86    84 0.499   4.28
 6.00 Prom - 182882 182843   40                              -9.55

 7.02 PlyA - 183014 183009    6                               1.05
 7.01 Sngl - 184097 183399  699  2  0   56   42   262 0.845  14.61
 7.00 Prom - 186919 186880   40                              -2.76

 8.02 PlyA - 187611 187606    6                               1.05
 8.01 Sngl - 199026 198238  789  0  0   69   44   863 0.751  73.93

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  72663  72543  121  2  1   24   32   196 0.900   5.55


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:138845595_139046722|GENSCAN_predicted_peptide_1|52_aa
MAMRVTSGNPHCYTPTSAMTVYKCHGNVRKLPYGNLYGLKRGDQCISFVKVG

>gi568815595r:138845595_139046722|GENSCAN_predicted_CDS_1|159_bp
atggcgatgagagtgacctctggtaatcctcactgctacactcccaccagtgccatgaca
gtttacaaatgccatggcaacgtcaggaagttaccctatggtaacctgtatggtctaaaa
aggggagatcaatgtatcagctttgtgaaagtaggttag

>gi568815595r:138845595_139046722|GENSCAN_predicted_peptide_2|455_aa
MRHHGTLSTLLQNFRYTVSPIFSETIQFSNPIRNGNEFSLAGNECAKLVPVFKPWDLLLA
MLKMLYEDFLMADSLGAAPSGRRGALNLVGETSALQETEAAKRLGHHQVRLKRGGQVDRD
PWAPINAMVAESKGDEHSLGPSPESPSVRLWPCLVGRGSRRAPQSGGIASAELRLSALSL
GPSTGASGVCGEKSRIEKYGRVSSVAAVHTRARLSVPGDTVWHRRSCSAVGATWEVGFRV
LLWSAGKSGSGSAGQRFGAAGLLYLSSAGRSGKSAPGSLLPSQAMVKGGEARVCHGLGEN
AAAGSLWAAALARGPKTVKESVAQKIRGRALEESPRPGEGTEAPLRGAAGTGDARVRIWP
ANRAQRSRKPESPQRLSTIPFLGIGSVAPCERTTAEKVFLLTLNSRNGPVMTQKTNNPRK
TKQQRQPQTPATPVALNLCLTHSEKDKILLKIFLF

>gi568815595r:138845595_139046722|GENSCAN_predicted_CDS_2|1368_bp
atgagacaccacgggaccttatctaccctcttgcagaatttcagatacactgtgtctcca
atattctcggaaaccatccagtttagtaaccctatcagaaacggaaatgagtttagcttg
gcaggaaatgagtgtgccaagcttgttcctgtcttcaagccatgggatttgttgttggct
atgcttaaaatgctctatgaagatttcctcatggctgactccttgggagcagccccttcc
ggtcgtcgaggcgctcttaatttggttggagagacaagtgcactacaagaaacagaggca
gccaagcgcctgggccaccatcaagtaaggttgaaaaggggagggcaggtagatcgggac
ccgtgggcgccaatcaatgctatggtggcggagagtaaaggggacgaacacagcctgggg
ccatccccggagtcccccagcgtccgcctgtggccgtgcctggttggccgcggatcccgg
cgggcgccgcaaagcggcgggattgccagcgcagagctccggctctctgccttgtccctg
ggtccgagcaccggagcctctggtgtctgcggggagaagtctcggattgagaaatacggg
agggtctcgtcagtggctgcagtacacacgcgagcacgactgtctgtgcctggagacacc
gtatggcaccggaggagctgctcagccgtcggtgccacctgggaagtagggtttcgggtg
ctgctctggagcgcgggaaagtccggatccgggtctgctggtcagcgcttcggcgccgcc
gggctcctttatctctcatccgccggccggtcagggaagtcggcccccgggagcctcctg
ccctcacaagccatggtgaagggaggcgaagccagggtttgccacggcctgggagaaaat
gcggctgcagggtctctttgggctgcagcgctggcccggggccccaagactgttaaggag
agcgttgcgcagaaaattcgaggccgggcgctggaggagtctccgcggcccggagaaggc
acagaggcgcccctgagaggcgcagctggaacaggcgatgcacgggttcggatctggccg
gccaaccgagcccagcggtcgcgaaaaccagagtcgccacagaggttgagcacgattcca
tttctggggatcgggtccgtcgcgccttgtgaacgaaccacggcagaaaaagtctttctg
ctgacgttaaacagccgcaacgggccagtgatgacacagaaaacaaacaatcccaggaaa
acaaagcagcagcgacagccacaaacgcctgccaccccggttgctctcaatctttgttta
actcattctgaaaaagataaaattttgctgaaaatcttcctcttttaa

>gi568815595r:138845595_139046722|GENSCAN_predicted_peptide_3|564_aa
MRDKRLHTGYRVQCSGDKCTKISEITIKELIHLASTMKKADNCPAFCLIDDGAHTPWDKM
VLEDSYPNISKDSRPWGEKRLYQSRVDCSRRLSGPPRRGARLRGGAGAETALNRRFTGTV
SAGGATPRARSSASRRQQTAEQRSRFLSPESREEAWSAFPRWGPSFLGFGRRLERRAEAA
RPRRAGFVMMASYPEPEDAAGALLAPETGRTVKEPEGPPPSPGKGGGGGGGTAPEKPDPA
QKPPYSYVALIAMAIRESAEKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECF
IKVPREGGGERKGNYWTLDPACEDMFEKGNYRRRRRMKRPFRPPPAHFQPGKGLFGAGGA
AGGCGVAGAGADGYGYLAPPKYLQSGFLNNSWPLPQPPSPMPYASCQMAAAAAAAAAAAA
AAGPGSPGAAAVVKGLAGPAASYGPYTRVQSMALPPGVVNSYNGLGGPPAAPPPPPHPHP
HPHAHHLHAAAAPPPAPPHHGAAAPPPGQLSPASPATAAPPAPAPTSAPGLQFACARQPE
LAMMHCSYWDHDSKTGALHSRLDL

>gi568815595r:138845595_139046722|GENSCAN_predicted_CDS_3|1695_bp
atgagggataaaagattacacactgggtaccgtgtacaatgctcgggtgacaagtgcacc
aaaatctcagaaattaccattaaagaacttatccatttggcctccaccatgaaaaaggcc
gacaactgccctgcattctgcctgattgacgatggggcacatactccttgggacaaaatg
gtgttggaggactcataccccaacatcagcaaggattcccggccctggggagaaaagcgt
ctgtatcagagccgtgtagattgctcgcgccggctgtcgggacctccgaggcgcggggcc
aggctgcgaggaggcgcgggagctgagactgcgctcaatcggcggttcactggaaccgta
tccgcaggcggcgctacgccccgagctagaagttcagcctcaagacggcagcaaacggca
gagcaaaggagtcgttttctttcacctgaaagccgcgaggaggcttggagcgcctttcct
cgctggggcccgagcttcctgggctttggccggcgcctggagcggagagcagaggcggcc
cggccgcggcgcgccggctttgtcatgatggccagctaccccgagcccgaggacgcggcg
ggggccctgctggccccagagaccggtcgcacagtcaaggagccagaagggccgccgccg
agcccaggcaagggcggtgggggtggcggcgggacagccccggagaagccggacccggcg
cagaagcccccgtactcgtacgtggcgctcatcgccatggcgatccgcgagagcgcggag
aagaggctcacgctgtccggcatctaccagtacatcatcgcgaagttcccgttctacgag
aagaataagaagggctggcaaaatagcatccgccacaacctcagcctcaacgagtgcttc
atcaaggtgccgcgcgagggcggcggcgagcgcaagggcaactactggacgctggacccg
gcctgcgaagacatgttcgagaagggcaactaccggcgccgccgccgcatgaagaggccc
ttccggccgccgcccgcgcacttccagcccggcaaggggctcttcggggccggaggcgcc
gcaggcgggtgcggcgtggcgggcgccggggccgacggctacggctacctggcgcccccc
aagtacctgcagtctggcttcctcaacaactcgtggccgctaccgcagcctccctcaccc
atgccctatgcctcctgccagatggcggcagccgcagcggctgcagcagctgcggctgca
gccgcgggccccggtagccctggcgcggccgctgtggtcaaggggctggcgggcccggcc
gcctcgtacgggccgtacacacgcgtgcagagcatggcgctgccccccggcgtagtgaac
tcgtacaatggcctgggaggcccgccggccgcacccccgcctccgccgcacccccacccg
catccgcacgcacaccatctgcacgcggccgccgcaccgccgcctgccccaccgcaccac
ggggccgccgcgccgccgccgggccagctcagccctgccagcccagccaccgccgcgccc
ccggcgcccgcgcccaccagtgcgccgggcctgcagttcgcttgtgcccggcagcccgag
ctcgccatgatgcattgctcttactgggaccacgacagcaagaccggcgcgctgcattcg
cgcctcgatctctga

>gi568815595r:138845595_139046722|GENSCAN_predicted_peptide_4|230_aa
MVDPALRVALSAGMSGHPHLGAENTPSSPVPSTTPKTKLGTCSMLDRGCYSNTFKSQAAW
ESHRASGRQEEGEVTSVQDPSSQELLWACASVPVHLNPERRSRGSPRASCIAASRKDITR
LSRALVPIAGCRFRRASAGKERGTKVRKPPVAGVSPASGPEGRATLVLHPESYTLNTRQA
WNNTGKRAFLPPPRNPAGLPAVFVLQPSPILNFPPLHATASLSMNTYEDP

>gi568815595r:138845595_139046722|GENSCAN_predicted_CDS_4|693_bp
atggtggacccagcattgcgggttgctctctcggcaggcatgtctggccatccacacctg
ggggcagagaacactccatcttcccctgtgccctccacaacacccaagacaaagctgggc
acatgcagcatgctcgataggggctgctactcaaatactttcaaaagccaagcagcgtgg
gagagccatcgggcatcaggaagacaggaggaaggcgaggtgaccagtgtgcaggacccc
agctctcaggagctgctctgggcttgcgcgtctgtgcccgtgcacctgaaccccgagcgg
cgaagccggggctccccgcgggcttcctgcatcgctgcctccaggaaagacatcacccgc
ctgtcccgggccctggtccccatcgccggctgccgcttccggcgggcctctgcggggaag
gagcgcggtacgaaagtgaggaagccccccgtcgctggggtgagccccgcttccggtccg
gagggacgcgccacgctcgtcctacaccctgagtcctacaccctgaacacccgtcaggcc
tggaacaacaccgggaaacgtgccttccttcctccacccaggaacccggccggactgccc
gcagtctttgtcctgcagccctctcccatcctgaatttcccgcctcttcatgctactgcc
tcactatccatgaacacatacgaggacccctaa

>gi568815595r:138845595_139046722|GENSCAN_predicted_peptide_5|51_aa
MIKYVGNPNESTEKLLDIISSPLPLRQCPEQCLAQIEGTLMKELTFEGEHV

>gi568815595r:138845595_139046722|GENSCAN_predicted_CDS_5|156_bp
atgatcaaatatgtaggaaatcctaatgaatcaacagaaaaacttctagatataataagc
tcacctttaccactccgccagtgtccagagcagtgcctggcccagattgagggaacatta
atgaaggagctaacttttgagggcgagcatgtatga

>gi568815595r:138845595_139046722|GENSCAN_predicted_peptide_6|794_aa
MSELLFTIASKRIKYLGIQLTRDVKDLFEENYKPLLNEIKEDTNKWKNIPCSWIGRINIV
KMAILPKNWKNYFKVHMEPKKARIAKTVLSQKNKAGGIMLPDVKLYYKAIVTKTAWWELN
NENTWTQKGEHHTPELVKGWEERGGIALGDIPNVNDELIASPTTDICYFKEDFTAALPTS
AARPRSAVHSAVEAMVSRPRSPSAFPAPWWGQQPGGPGPAKRLRLEEPAGPEPRAAPSLE
DPAGDPAVDALTSIVVLAAGCALRVPLDDVDLVLEPAPTSILRVSLGGHTLILIPEVLLS
SVDERSGAQHDSSAGLEVDVFLGAVREDVVVELEFCASVPEIAAQEEAYEEDADPEFPEL
RMDSPTGSAAGLYPSSRSMFIPYREGPIPEPCALAPNPSSERRSPRPIFDLEFRLLEPVP
SSPLQPLPPSPCVGSPGHLTSHVISHRTCIRVCARKAQDSIARGSLSSTDCGLREAPLEL
PGLSPRRAVLRPFRPNPPRLAPTPVTSKRTSLPALPTSSARPKSAVEAMGSRPRSPSAFP
APWWGQQPGGPGPAKRLRLEEPAGPEPRVAPSLEDPAGTPAVGALTSIVVLAAGCALRVP
LDDVDLVLELPPTSILRVSLDGHTLILIPEVLLSSVDERSGAQDDSSAGLEVDVFLGALR
EDVVVEQEVFCASVPEIAAQEEAYEEDADPEFPELQMDSAAGSAAGLYSSARSMFSPYRE
GPIPEPCALAPNPSSEGHSPGPFFDPEFRLLEPVPSSPLQPLPPSPRVGSPGPHAHPPLP
KRPPCKARRRLFQE

>gi568815595r:138845595_139046722|GENSCAN_predicted_CDS_6|2385_bp
atgagtgaactcctattcacaattgcttcaaagagaataaaatacctaggaatccagctt
acaagggatgtgaaggacctattcgaagagaactacaaaccactgctcaacgaaataaaa
gaggacacaaacaaatggaagaacattccatgctcatggataggaagaatcaatatcgtg
aaaatggccatactgcccaagaattggaaaaactactttaaagttcatatggaaccaaaa
aaagcccgcattgccaagacagtcctaagccaaaagaacaaagctggaggcatcatgcta
cctgatgtcaaactatactacaaggctatagtaaccaaaacagcatggtgggaattgaac
aatgagaacacttggacacagaaaggggaacatcacacaccggagctcgtcaagggctgg
gaggagaggggagggatagcattaggagatatacctaatgtaaatgacgagttaatagcc
tcccctaccaccgacatctgttacttcaaagaggacttcaccgccgcgctccccacgtcc
gctgctaggcccaggagcgccgtccacagcgccgtcgaggcgatggtcagccggccccgc
agccccagcgccttccctgctccctggtggggacagcagccaggaggacccggccctgcc
aagcgcctccgattggaggagcccgcgggccccgaaccccgcgcggcacccagcctggaa
gacccggcgggggacccggccgtggacgcgctcacctccatagtggtcctggccgcgggc
tgtgccctgcgtgtgcccctggacgacgtcgacctggtgctggagcccgcaccaacgtcg
atcctgcgagtgtctctcggtggacacaccctcatcctgatcccagaggtcctcctgagc
tccgtcgacgaacgctcaggagcgcagcacgactcgtctgccgggctggaagtggacgtt
ttcctgggcgctgtcagggaggacgtcgtcgtcgagctggaattctgcgcatctgtccca
gagatcgccgcccaggaagaggcctacgaggaggacgcggaccccgagttcccggagctc
cggatggactccccaaccggctcagccgctgggctctacccctcctctagaagtatgttc
atcccctaccgggagggccccatcccagaaccctgtgctctggcccccaaccccagttca
gagagacgttctccacgccccatctttgacctggaattccgccttctggagcctgtcccc
agctcacctctccaacctctacctccctctccgtgcgtggggagtccaggtcacctgacg
tcccacgttattagtcatcggacgtgcatccgggtctgcgccaggaaggcccaagattcc
atcgcgcgaggctctctcagcagcacggactgcggtctccgggaggcgcccctggagctc
ccaggactctccccgcgccgcgcggtccttcgccccttccgccccaacccgcctcgccta
gcaccgacacctgttacctcaaaaaggacttcgctgcccgcgctccctacgtcctctgct
aggcccaagagcgccgtcgaggctatgggcagccggccccgcagccccagcgccttccct
gcgccctggtggggacagcagccaggaggacccggccctgccaagcgcctccgattggag
gagcccgcgggccccgaaccccgcgtggcgcccagcctggaagacccggcgggtaccccg
gccgtgggcgcgctcacctccatagtggtcctggccgcgggctgtgccctgcgtgtgccc
ctggacgacgtcgacctggtgctggagctcccgccaacgtcgatcctgcgagtgtctctc
gatggacacaccctcatcctgatcccagaggtcctcctgagctctgtcgacgaacgctca
ggagcgcaggacgactcgtctgctgggctggaagtggacgttttcctgggcgctctcagg
gaggacgtcgtcgttgagcaggaagtcttctgcgcatctgtcccagagatcgccgcccag
gaagaggcctacgaggaggacgcggaccccgagtttccggagctccagatggactccgca
gccggctcagccgctgggctctactcctccgccagaagtatgttcagcccctaccgggag
ggccccatcccagaaccctgtgctctggcccccaaccccagttcagagggacactctcca
ggccccttcttcgacccggaattccgccttctggagcctgtccccagctcacctctccaa
cctctacctccctctccgcgcgtggggagtccaggtccccacgcgcacccgccgctcccg
aaacgccctccgtgcaaggcccgcagacgactgttccaggaatga

>gi568815595r:138845595_139046722|GENSCAN_predicted_peptide_7|232_aa
MKREKNQIDAIKNDKGDITTDRTEIQTTIREYYKHLYANKLENLEEMEKCLDTYTLPRLK
QEEVESLNRPITGSEIKAIINSLPTKKSPGPDGFPAEFYQRYKEELVPFLLKLFQSIEKE
GILPNSFYEASIILIPKPGRDTTKKKENFRPISLMNIDAKILNKITATQIQQHIKKLIYH
DQVGFIPGMQGWFNTRKSINVIHHINKTKDKNHMIISIDAEKAFDKIQQPSC

>gi568815595r:138845595_139046722|GENSCAN_predicted_CDS_7|699_bp
atgaaaagagagaagaatcaaatagatgcaataaaaaatgataaaggggatatcaccacc
gatcgcacagaaatacaaactaccatcagagaatactataaacacctctacgcaaataaa
ctagaaaatctagaagaaatggaaaaatgcctggacacatacaccctcccaagactaaaa
caggaagaagttgaatccctgaatagaccaataacaggctctgaaattaaggcaataatt
aatagcctaccaaccaaaaaaagtccaggaccagacggattcccagccgaattctaccag
aggtacaaagaggagctggtaccattccttctgaaactattccaatcaatagaaaaagag
ggaatcctccctaactcattttatgaggccagcatcatcctgataccaaagcctggcaga
gacacaacaaaaaaaaaagagaattttagaccaatctccctgatgaacatcgatgcaaaa
atcctcaataaaataacagcaacccaaatccagcagcacatcaaaaagcttatctaccac
gatcaagtgggcttcatccctgggatgcaaggctggttcaacacacgcaaatcaataaat
gtaatccatcacataaacaaaaccaaagacaaaaaccacatgattatctcaatagatgca
gaaaaggccttcgataaaattcaacagccttcatgctaa

>gi568815595r:138845595_139046722|GENSCAN_predicted_peptide_8|262_aa
MGSRPCSPSACLAPWWGQQPGGPGPAKRSRLEEPAGPESRAAPSPEDPAGTPAVDALTSM
VVLDAGCALRVPLEDVDLVLELAPMSVLRVSLGGHTLIVIPEVLLSSVDECSGAQGDWSA
GLEVDVFLGAHGEDVVVEQEVCASVPEIAAEEEAYEEDADSEFPELWMDSAAGSAAGLYP
SARSMFSPYREGPIRGPCALAPNPSSERRSPRPIFDLEFHLLEPVPSSPLQPLPPSPSPG
PHARPELPERPPCKVRRRLFQE

>gi568815595r:138845595_139046722|GENSCAN_predicted_CDS_8|789_bp
atgggcagccggccctgcagccccagcgcctgccttgcgccctggtggggacagcagcca
ggaggaccaggccctgccaagcgcagccgattggaggagcccgcgggccccgaatcccga
gcggcgcccagcccggaagacccggcggggaccccggccgtggacgcgctcacctccatg
gtggtcctggacgcgggctgtgccctgcgtgtgcccctggaggacgtcgacctggtgctg
gagctcgcgccaatgtcggtcctgcgagtgtctcttggtggacacaccctcatcgtgatc
cccgaggtcctcctgagctccgtcgacgaatgctcaggagcgcagggcgactggtctgcc
ggcctggaagtggacgttttcctgggcgctcacggggaagacgtcgtcgtcgagcaggaa
gtctgcgcatctgtcccagagatcgctgccgaggaagaggcctacgaggaggacgcggac
tctgagttcccggagctctggatggactccgcagccggctcagccgctgggctctacccc
tccgctagaagtatgttcagcccctaccgggagggccccatccgagggccctgtgctctg
gcccccaaccccagttcagagagacgctctccacgccccatcttcgacctggaattccat
cttctggagcctgtccccagctcacctctccaacctctacctccctctccgagtccaggt
ccccacgcgcgcccggagctcccagagcgccctccgtgcaaggtccgaagacgcctgttc
caggaatga