GENSCAN 1.0	Date run:  6-Nov-116	Time: 17:49:47

Sequence gi568815595f:48123512_48325421 : 201910 bp : 46.82% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Term +   3387   3488  102  2  0   73   40   138 0.895   5.78
 1.02 PlyA +   6667   6672    6                               1.05

 2.14 PlyA -   7458   7453    6                               1.05
 2.13 Term -  35574  35434  141  0  0  111   55   226 0.999  19.53
 2.12 Intr -  35944  35833  112  0  1   83  110    53 0.999   7.38
 2.11 Intr -  40926  40796  131  0  2   74   84   127 0.998  10.39
 2.10 Intr -  42223  42125   99  1  0   90   86   187 0.999  19.01
 2.09 Intr -  42382  42320   63  1  0   89   87    19 0.637   0.81
 2.08 Intr -  44433  44335   99  0  0   85   86    78 0.951   7.61
 2.07 Intr -  50946  50773  174  0  0   55   88    80 0.917   4.84
 2.06 Intr -  53931  53860   72  0  0   90   70    22 0.509   0.20
 2.05 Intr -  54477  54343  135  0  0   89   81   139 0.910  14.06
 2.04 Intr -  57383  57210  174  2  0   65   80    78 0.636   4.84
 2.03 Intr -  59519  59418  102  2  0   69   82    81 0.806   5.97
 2.02 Intr -  60325  60289   37  0  1   78   95   -24 0.480  -4.44
 2.01 Init -  64436  64267  170  2  2  105  110   207 0.999  22.91
 2.00 Prom -  68200  68161   40                              -3.66

 3.05 PlyA -  68646  68641    6                               1.05
 3.04 Term -  81880  81772  109  0  1   94   39    88 0.254   2.48
 3.03 Intr -  82848  82784   65  0  2  131   27    44 0.127   0.12
 3.02 Intr -  91950  91867   84  0  0  114   72    81 0.298   9.12
 3.01 Init -  92352  92149  204  0  0   72   96   102 0.862   8.25
 3.00 Prom -  93520  93481   40                              -7.66

 4.00 Prom +  99949  99988   40                              -6.16
 4.01 Init + 100001 100201  201  1  0  100   89   402 0.809  38.38
 4.02 Intr + 100843 100950  108  0  0   71   60   125 0.997   8.48
 4.03 Intr + 101092 101163   72  0  0   77  113    71 0.981   8.10
 4.04 Term + 101782 101913  132  0  0   64   36   108 0.686   1.29
 4.05 PlyA + 101953 101958    6                               1.05

 5.00 Prom + 108375 108414   40                              -5.96
 5.01 Init + 110963 111094  132  1  0   49  110   182 0.527  16.71
 5.02 Intr + 133110 133232  123  2  0   99    8    84 0.016   2.28
 5.03 Intr + 137302 137428  127  0  1   34   82    34 0.015  -2.35
 5.04 Intr + 144404 145260  857  0  2   99   -6   260 0.077   8.78
 5.05 Term + 145402 146271  870  0  0   53   45   406 0.118  25.44
 5.06 PlyA + 149924 149929    6                               1.05

 6.07 PlyA - 151374 151369    6                               1.05
 6.06 Term - 165338 165280   59  0  2  123   39    23 0.120  -1.25
 6.05 Intr - 171292 171170  123  2  0  112   22   123 0.266   8.66
 6.04 Intr - 171724 171564  161  0  2   88  100   201 0.995  20.93
 6.03 Intr - 172647 172608   40  1  1   99   80     6 0.883  -1.82
 6.02 Intr - 173318 173216  103  2  1   39   97    98 0.665   5.55
 6.01 Init - 175005 174916   90  0  0   71   94    58 0.693   3.29
 6.00 Prom - 186172 186133   40                              -3.46

 7.03 PlyA - 186235 186230    6                               1.05
 7.02 Term - 190815 190677  139  2  1   93   55    49 0.312  -0.46
 7.01 Intr - 196107 195986  122  0  2   74   84    65 0.454   3.99

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  87207  87530  324  2  0   72   55   185 0.802   9.61
S.002 Sngl - 133427 133185  243  2  0   89   41   175 0.834   6.71


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:48123512_48325421|GENSCAN_predicted_peptide_1|33_aa
VLHISPEPENSNDVSGKSQAIGTNVYGVNTYRV

>gi568815595f:48123512_48325421|GENSCAN_predicted_CDS_1|102_bp
gtactacacatctccccagaaccagagaacagcaatgatgtcagtgggaaatcccaggca
attggcactaatgtctacggtgtaaacacctacagagtgtag

>gi568815595f:48123512_48325421|GENSCAN_predicted_peptide_2|502_aa
MELGPEPPHRRRLLFACSPPPASQPVVKALFGASAAGGLSPVTNLTVTMDQLQGLGSLEN
PMRRIHSLPQKLLGCSPALKRSHSDSLDHDIFQLIDPDENKENLRPELVFMDSRCLNYVL
QEAFEFKKPVRPVSRGCLHSHGLQEGKDLFTQRQNSAPARMLSSNERDSSEPGNFIPLFT
PQSPVTATLSDEDDGFVDLLDGENLKNEEETPSCMASLWTAPLVMRTTNLDNRCKLFDSP
SLCSSSTRSVLKRPERSQEESPPGSTKRRKSMSGASPKESTNPEKAHETLHQSLSLASSP
KGTIENILDNDPRDLIGDFSKGYLFHTVAGKHQDLKYISPEIMASVLNGKFANLIKEFVI
IDCRYPYEYEGGHIKGAVNLHMEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERGPRMC
RYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCEPPSYRPMHHEDFKEDLKKFR
TKSRTWAGEKSKREMYSRLKKL

>gi568815595f:48123512_48325421|GENSCAN_predicted_CDS_2|1509_bp
atggaactgggcccggagcccccgcaccgccgccgcctgctcttcgcctgcagcccccct
cccgcgtcgcagcccgtcgtgaaggcgctatttggcgcttcagccgccgggggactgtcg
cctgtcaccaacctgaccgtcactatggaccagctgcagggtctgggcagccttgaaaat
cctatgagaagaatacattccctacctcagaagctgttgggatgtagtccagctctgaag
aggagccattctgattctcttgaccatgacatctttcagctcatcgacccagatgagaac
aaggaaaatctgaggcctgagttggttttcatggacagtagatgtctcaactatgtcttg
caggaagcctttgagtttaagaagccagtaagacctgtatctcgtggctgcctgcactct
catggactccaggagggtaaagatctcttcacacagaggcagaactctgccccagctcgg
atgctttcctcaaatgaaagagatagcagtgaaccagggaatttcattcctctttttaca
ccccagtcacctgtgacagccactttgtctgatgaggatgatggcttcgtggaccttctc
gatggagagaatctgaagaatgaggaggagaccccctcgtgcatggcaagcctctggaca
gctcctctcgtcatgagaactacaaaccttgacaaccgatgcaagctgtttgactcccct
tccctgtgtagctccagcactcggtcagtgttgaagagaccagaacgatctcaagaggag
tctccacctggaagtacaaagaggaggaagagcatgtctggggccagccccaaagagtca
actaatccagagaaggcccatgagactcttcatcagtctttatccctggcatcttccccc
aaaggaaccattgagaacattttggacaatgacccaagggaccttataggagacttctcc
aagggttatctctttcatacagttgctgggaaacatcaggatttaaaatacatctctcca
gaaattatggcatctgttttgaatggcaagtttgccaacctcattaaagagtttgttatc
atcgactgtcgatacccatatgaatacgagggaggccacatcaagggtgcagtgaacttg
cacatggaagaagaggttgaagacttcttattgaagaagcccattgtacctactgatggc
aagcgtgtcattgttgtgtttcactgcgagttttcttctgagagaggtccccgcatgtgc
cggtatgtgagagagagagatcgcctgggtaatgaataccccaaactccactaccctgag
ctgtatgtcctgaaggggggatacaaggagttctttatgaaatgccagtcttactgtgag
ccccctagctaccggcccatgcaccacgaggactttaaagaagacctgaagaagttccgc
accaagagccggacctgggcaggggagaagagcaagagggagatgtacagtcgtctgaag
aagctctga

>gi568815595f:48123512_48325421|GENSCAN_predicted_peptide_3|153_aa
MRATDKSLEQGPLSRKRQNQDLDSMPPPTNLAVLLMGTCGRIQALPPALCSKLEMQMWAA
MRVEIWDRQVKNCRGYFSAAEDPKKLPICESQNFAGAVPLLLWLLKTRNKDSKETLGKIR
STPSYPNLAGNWELGELACALLSSPVPLEPMQA

>gi568815595f:48123512_48325421|GENSCAN_predicted_CDS_3|462_bp
atgagggccacagataaatcacttgaacaaggacccctatccagaaaacggcagaaccag
gacttggactcaatgcccccacccaccaaccttgctgtccttctcatggggacatgtgga
agaattcaagccctgcctcctgccctctgcagcaaactggaaatgcagatgtgggctgcc
atgagggtggaaatatgggacaggcaagtgaagaactgccgggggtacttcagtgctgct
gaggaccccaagaagttgcccatctgtgaatcccaaaactttgctggggctgtacccctg
ctcctctggctgcttaagaccaggaacaaagactccaaggagactctgggcaaaattagg
agcacccccagctacccgaacctagcgggcaactgggaacttggagagctggcctgtgcc
ctcctctccagcccagtgcccttggaacccatgcaggcatag

>gi568815595f:48123512_48325421|GENSCAN_predicted_peptide_4|170_aa
MKTQRDGHSLGRWSLVLLLLGLVMPLAIIAQVLSYKEAVLRAIDGINQRSSDANLYRLLD
LDPRPTMDGDPDTPKPVSFTVKETVCPRTTQQSPEDCDFKKDGLVKRCMGTVTLNQARGS
FDISCDKDNKRFALLGDFFRKSKEKIGKEFKRIVQRIKDFLRNLVPRTES

>gi568815595f:48123512_48325421|GENSCAN_predicted_CDS_4|513_bp
atgaagacccaaagggatggccactccctggggcggtggtcactggtgctcctgctgctg
ggcctggtgatgcctctggccatcattgcccaggtcctcagctacaaggaagctgtgctt
cgtgctatagatggcatcaaccagcggtcctcggatgctaacctctaccgcctcctggac
ctggaccccaggcccacgatggatggggacccagacacgccaaagcctgtgagcttcaca
gtgaaggagacagtgtgccccaggacgacacagcagtcaccagaggattgtgacttcaag
aaggacgggctggtgaagcggtgtatggggacagtgaccctcaaccaggccaggggctcc
tttgacatcagttgtgataaggataacaagagatttgccctgctgggtgatttcttccgg
aaatctaaagagaagattggcaaagagtttaaaagaattgtccagagaatcaaggatttt
ttgcggaatcttgtacccaggacagagtcctag

>gi568815595f:48123512_48325421|GENSCAN_predicted_peptide_5|702_aa
MNTVAADYTGLTAPFMTLVAAHEKRPFKDEHRWNRQVKQTHAGQACDLSGQHASMGLDEL
AKQQNIIIVLLVVQVPVADGALARGGPVTFEDVAVLFTEAEWKRLSLEQRNLYKEVMLEN
LRNLVSLAESKPEVHTCPSCPLAFGSQQFLSQDELHNHPIPGFHAGNQLHPGNPCPEDQP
QSQHPSDKNHRGAEAEDQRVEGGVRPLFWSTNERGALVGFSSLFQRPPISSWGGNRILEI
QLSPAQNASSEEVDRISKRAETPGFGAVTFGECALAFNQKSNLFRQKAVTAEKSSDKRQS
QVCRECGRGFSRKSQLIIHQRTHTGEKPYVCGECGRGFIVESVLRNHLSTHSGEKPYVCS
HCGRGFSCKPYLIRHQRTHTREKSFMCTVCGRGFREKSELIKHQRIHTGDKPYWTHSEVK
PHVCEECGHGFSQKSSLKSHRRTHSGEKPYVCGECGRGFSRRIVLNGHWRTHTGEKPYTC
FECGRNFSLKSALSVHQRIHSGEKPYACTECGQGFITKSQLIRHQRTHTGEKPYVCGECG
RGFIAQSTLHYHRSTHSKEKPYVCSQCGRGFCDKSTLLAHEQTHSGEKPYVCGECGRGFG
RKILLNRHWRTHTGEKPYACIECGRNFSHKSTLSLHQRIHSGEKPYACVECGQSFRRKSQ
LIIHQKIHSGKSFRGARSEDVILATSQPSATPAEMLREKPCL

>gi568815595f:48123512_48325421|GENSCAN_predicted_CDS_5|2109_bp
atgaacactgtggcagcagactacactggactcacagccccgttcatgactcttgtggct
gcccatgaaaaacgaccattcaaagatgaacatcgatggaatcgacaagttaaacagacc
catgctggccaggcctgtgatctttcggggcagcatgcctccatggggctggatgaactg
gctaagcagcaaaacatcatcatagttttacttgtggttcaggttccagtggcagatggg
gcactggccagagggggaccagtgactttcgaggatgtggctgtgcttttcactgaggca
gagtggaagagactgagccttgagcagaggaacctatacaaagaagtgatgctggaaaat
ctcaggaatctggtctcattggcagaatcaaagccagaagtccatacctgcccttcttgc
cctctggcctttggcagtcagcagttcctcagccaagatgagctacacaatcatcctatt
ccaggtttccatgcaggaaatcaactccacccaggaaatccctgcccagaggatcagcca
cagtcacaacatccttctgataaaaatcacaggggggctgaagcagaagatcaacgagtg
gaaggaggcgtcagacccttgttttggagtacaaatgaaaggggggctttagtgggtttc
tctagcctgttccagagaccaccaataagctcttggggaggcaacagaatattagagata
cagctcagtccagcccagaatgcaagctctgaggaagtagacagaatttccaagagggca
gaaaccccagggtttggagcagtcacgtttggggagtgtgcactagcttttaaccagaag
tcaaacctgttcagacagaaggcagtcacagcagaaaaatcttcagacaaaaggcagtca
caggtgtgcagggagtgtgggcgaggctttagcaggaagtcacagctcatcatacaccag
aggacacacacaggagaaaagccttatgtctgcggagagtgtgggcgaggctttatagtt
gagtcagtcctccgcaaccacctgagtacacactccggggagaaaccttatgtgtgcagc
cattgtgggcgaggctttagctgcaagccatacctcatcagacatcagaggacacacaca
agggagaaatcgtttatgtgcacagtgtgtgggcgaggctttcgtgaaaagtcagagctc
attaagcaccagagaattcacacgggggataagccttattggacacattcagaggtgaaa
cctcacgtgtgtgaggagtgtgggcatggatttagccagaagtcgtcgctcaaatcacat
cggagaacacactcaggggagaagccttatgtgtgtggggaatgtgggcggggatttagc
cggaggatagtcctcaatggacactggaggacacacacgggagagaagccttacacgtgc
tttgagtgtgggcgaaactttagcctcaagtccgctcttagtgtacatcagaggatacac
tctggggagaagccttatgcatgcacggagtgtgggcaaggctttatcacgaaatcacag
ctcatcagacaccagaggacacacacaggagaaaagccttatgtctgcggagagtgtggg
cgaggctttatagctcagtcaaccctccactaccaccggagtacacactccaaggaaaaa
ccttatgtgtgcagccagtgtgggcgaggcttttgtgataaatcaactctcctcgcacac
gagcagacacattcaggggagaagccttatgtgtgtggggaatgtgggcggggatttggc
cggaagatactcctcaacagacactggaggacacacacaggagagaaaccttacgcatgc
atcgagtgtgggcgaaactttagccacaagtccactctcagcttacatcagaggatacac
tcgggggagaagccttatgcatgcgtggagtgtgggcaaagctttaggagaaagtcacag
ctcatcatacaccagaagatacactcggggaaaagctttagaggtgcaaggagtgaggat
gtgattttagcaacaagtcagccatcagccacaccagcggaaatgcttagggagaagcct
tgtttgtaa

>gi568815595f:48123512_48325421|GENSCAN_predicted_peptide_6|191_aa
MASILRSPQALQLTLALIKPDAVAHPLILEAVHQQILSNKFLIVRMRELLWRKEDCQRFY
REHEGRFFYQRLVEFMASGPIRAYILAHKDAIQLWRTLMGPTRVFRARHVAPDSIRGSFG
LTDTRNTTHGSDSVVSASREIAAFFPDFSEQRWYEEEEPQLRCGPVCYSPEGGPNLNVLS
IGRPSYILQSN

>gi568815595f:48123512_48325421|GENSCAN_predicted_CDS_6|576_bp
atggcctcaatcttgcgaagccctcaggctctccagctcactctagccctgatcaagcct
gacgcagtcgcccatccactgattctggaggctgttcatcagcagattctaagcaacaag
ttcctgattgtacgaatgagagaactactgtggagaaaggaagattgccagaggttttac
cgagagcatgaagggcgttttttctatcagaggctggtggagttcatggccagcgggcca
atccgagcctacatccttgcccacaaggatgccatccagctctggaggacgctcatggga
cccaccagagtgttccgagcacgccatgtggccccagattctatccgtgggagtttcggc
ctcactgacacccgcaacaccacccatggttcggactctgtggtttcagccagcagagag
attgcagccttcttccctgacttcagtgaacagcgctggtatgaggaggaagagccccag
ttgcgctgtggccctgtgtgctatagcccagagggaggtcccaacttaaatgtactttcc
ataggaaggccttcctacatcctgcagtccaactag

>gi568815595f:48123512_48325421|GENSCAN_predicted_peptide_7|86_aa
VECLKNVNKCWFLSYIKPSEPICGSDQVTYSSDCHLCSKILILENLILTIFASVLVAFVE
EILKILTSPFSLSKQKGSLLNEDTET

>gi568815595f:48123512_48325421|GENSCAN_predicted_CDS_7|261_bp
gttgaatgcctcaagaatgtaaataagtgctggtttttatcctacatcaagcccagtgaa
cctatttgtggcagtgaccaggttacctacagtagtgactgccatctgtgctccaaaatt
ctaattctggaaaacttgattctgaccatttttgccagtgttcttgttgctttcgtggag
gaaattttaaagattcttacttctccattttcactgtccaagcaaaagggctcacttttg
aatgaagacactgagacctga