GENSCAN 1.0	Date run:  6-Nov-116	Time: 17:51:44

Sequence gi568815595f:46398063_46600896 : 202834 bp : 44.96% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3099   3182   84  2  0   83   94    55 0.517   6.42
 1.02 Intr +   9327   9440  114  2  0   79  103    32 0.944   4.44
 1.03 Term +  10006  11052 1047  0  0   82   37   444 0.970  30.84
 1.04 PlyA +  11078  11083    6                               1.05

 2.03 PlyA -  13778  13773    6                               1.05
 2.02 Term -  24048  23547  502  2  1   40   36   275 0.802  11.45
 2.01 Init -  25350  25211  140  0  2   63   25   113 0.330   2.11
 2.00 Prom -  32063  32024   40                              -5.36

 3.18 PlyA -  32932  32927    6                               1.05
 3.17 Term -  35538  35372  167  1  2   43   42   110 0.370  -0.02
 3.16 Intr -  40067  39878  190  2  1  112  105    77 0.963  10.96
 3.15 Intr -  41418  41234  185  1  2  120   80   179 0.902  19.81
 3.14 Intr -  43421  43354   68  1  2   55   78    53 0.991  -0.45
 3.13 Intr -  45520  45379  142  2  1  110  117   187 0.993  23.21
 3.12 Intr -  47374  47219  156  2  0   54   87   141 0.838  10.58
 3.11 Intr -  48431  48378   54  0  0  103  113    22 0.972   5.15
 3.10 Intr -  49336  49246   91  1  1   72   98    82 0.996   7.17
 3.09 Intr -  50955  50801  155  1  2  103   58   200 0.985  18.29
 3.08 Intr -  51966  51792  175  0  1   87   87   163 0.999  15.61
 3.07 Intr -  52611  52433  179  1  2   98   70   218 0.998  20.64
 3.06 Intr -  56298  56243   56  2  2  128   91    -7 0.975   2.22
 3.05 Intr -  57380  57233  148  0  1   90   89    59 0.958   5.49
 3.04 Intr -  57916  57734  183  2  0  104  110   151 0.996  18.66
 3.03 Intr -  58336  58228  109  1  1   83   86    97 0.999   8.86
 3.02 Intr -  61757  61594  164  0  2   93  101    47 0.990   6.19
 3.01 Init -  66805  66763   43  1  1   84  109   110 0.960  11.38
 3.00 Prom -  70825  70786   40                              -5.66

 4.00 Prom +  78460  78499   40                              -7.66
 4.01 Init +  80119  80228  110  0  2   91   19    95 0.351   0.59
 4.02 Intr +  80275  80371   97  1  1   84   61    68 0.354   3.71
 4.03 Intr +  87153  87265  113  2  2   60   81    69 0.134   2.58
 4.04 Intr +  90972  91218  247  0  1   78   97   108 0.387   8.16
 4.05 Intr +  99947 100155  209  1  2   74   94    77 0.408   4.78
 4.06 Intr + 102294 102598  305  0  2  125   46   186 0.583  14.33
 4.07 Intr + 103146 103284  139  1  1   58   55   101 0.267   3.32
 4.08 Term + 113182 113293  112  1  1   84   37    74 0.291  -0.07
 4.09 PlyA + 115249 115254    6                               1.05

 5.09 PlyA - 117346 117341    6                               1.05
 5.08 Term - 121001 120952   50  0  2  112   40   -12 0.213  -6.13
 5.07 Intr - 123596 123460  137  1  2   63   90   194 0.981  17.31
 5.06 Intr - 129519 129364  156  2  0   89   87    68 0.966   5.93
 5.05 Intr - 131988 131843  146  0  2   57   70   114 0.977   5.58
 5.04 Intr - 134847 134711  137  1  2   72   63    86 0.898   4.79
 5.03 Intr - 141758 141635  124  2  1   63   37    49 0.246  -2.54
 5.02 Intr - 147191 146984  208  1  1   99  113   208 0.993  23.48
 5.01 Init - 153529 153405  125  1  2   76   62   162 0.973  12.04
 5.00 Prom - 156974 156935   40                              -3.36

 6.00 Prom + 169362 169401   40                              -5.66
 6.01 Init + 175732 175795   64  0  1   75  119    -2 0.370   2.91
 6.02 Intr + 181170 181304  135  1  0   42   61    73 0.580   0.54
 6.03 Intr + 181677 181791  115  1  1  130   63    96 0.742  10.81
 6.04 Intr + 181889 181998  110  2  2   93   91     3 0.561   1.03
 6.05 Term + 183070 183188  119  2  2   89   37    38 0.308  -2.50
 6.06 PlyA + 184226 184231    6                               1.05

 7.03 PlyA - 185131 185126    6                               1.05
 7.02 Term - 195589 195529   61  0  1  134   44    40 0.197   1.48
 7.01 Intr - 195773 195675   99  1  0   71   71    84 0.197   4.23

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:46398063_46600896|GENSCAN_predicted_peptide_1|414_aa
MTEWEYDGIKWLYVFQKDWSTQATGKWEGQEQSDQKEGIHCPGPFPQLPDAGSGGCALPL
QELSPVGSLKMANYTLAPEDEYDVLIEGELESDEAEQCDKYDAQALSAQLVPSLCSAVFV
IGVLDNLLVVLILVKYKGLKRVENIYLLNLAVSNLCFLLTLPFWAHAGGDPMCKILIGLY
FVGLYSETFFNCLLTVQRYLVFLHKGNFFSARRRVPCGIITSVLAWVTAILATLPEFVVY
KPQMEDQKYKCAFSRTPFLPADETFWKHFLTLKMNISVLVLPLFIFTFLYVQMRKTLRFR
EQRYSLFKLVFAIMVVFLLMWAPYNIAFFLSTFKEHFSLSDCKSSYNLDKSVHITKLIAT
THCCINPLLYAFLDGTFSKYLCRCFHLRSNTPLQPRGQSAQGTSREEPDHSTEV

>gi568815595f:46398063_46600896|GENSCAN_predicted_CDS_1|1245_bp
atgacagaatgggaatatgatggaattaagtggctttatgtgttccaaaaggattggtcc
acgcaggccacaggaaaatgggagggtcaggagcagtctgatcaaaaggagggcatccac
tgtccggggccattcccacagctcccggatgctgggtctggaggctgcgcccttcccctg
caggagctcagcccagtgggcagtctgaagatggccaattacacgctggcaccagaggat
gaatatgatgtcctcatagaaggtgaactggagagcgatgaggcagagcaatgtgacaag
tatgacgcccaggcactctcagcccagctggtgccatcactctgctctgctgtgtttgtg
atcggtgtcctggacaatctcctggttgtgcttatcctggtaaaatataaaggactcaaa
cgcgtggaaaatatctatcttctaaacttggcagtttctaacttgtgtttcttgcttacc
ctgcccttctgggctcatgctgggggcgatcccatgtgtaaaattctcattggactgtac
ttcgtgggcctgtacagtgagacatttttcaattgccttctgactgtgcaaaggtaccta
gtgtttttgcacaagggaaactttttctcagccaggaggagggtgccctgtggcatcatt
acaagtgtcctggcatgggtaacagccattctggccactttgcctgaattcgtggtttat
aaacctcagatggaagaccagaaatacaagtgtgcatttagcagaactcccttcctgcca
gctgatgagacattctggaagcattttctgactttaaaaatgaacatttcggttcttgtc
ctccccctatttatttttacatttctctatgtgcaaatgagaaaaacactaaggttcagg
gagcagaggtatagccttttcaagcttgtttttgccataatggtagtcttccttctgatg
tgggcgccctacaatattgcatttttcctgtccactttcaaagaacacttctccctgagt
gactgcaagagcagctacaatctggacaaaagtgttcacatcactaaactcatcgccacc
acccactgctgcatcaaccctctcctgtatgcgtttcttgatgggacatttagcaaatac
ctctgccgctgtttccatctgcgtagtaacaccccacttcaacccagggggcagtctgca
caaggcacatcgagggaagaacctgaccattccaccgaagtgtaa

>gi568815595f:46398063_46600896|GENSCAN_predicted_peptide_2|213_aa
MSMEKALKQLEVQSTKKERAFAGRVGWAFLTVLRKVHTQSLRDADWRELAKGVWLGGTPD
DQRPHVELAIHWSPTNVQWVLVLVDTGIDCSLVYGNPVKFLGKSAYIKGYGGQSVKVKPV
SLYLGIGHLAPCLYTVYVSPIPEYILEVDILHGLEAVPSIMDLMNHSTMELGQYHYVVDL
ANAFFSVDLALESQEQFALMTMDFHSVAAGLCA

>gi568815595f:46398063_46600896|GENSCAN_predicted_CDS_2|642_bp
atgagcatggagaaggcgctgaagcagctggaagtgcagagcaccaagaaggagagagcc
tttgctggcagagttggatgggcatttttaactgtgctaagaaaagtacacacccagtcc
ctgagggatgcagactggagggaactggccaaaggtgtctggcttggggggacaccagat
gaccagaggccacatgtggaattggcaatccactggtcccccaccaatgtacagtgggtg
ctggtgctggtagatactggcatagattgtagccttgtttatgggaacccagttaagttt
ttgggcaaatctgcatatattaaaggttacggaggccagtcagtgaaagtgaaacctgta
tctctgtaccttggcattggccacttggctccttgcttatacactgtgtatgtctctccc
atacctgaatacattctggaggtggatattttacatggcttggaagctgtgccatctatc
atggatttgatgaaccactcgacaatggaattaggacagtaccactatgtggtggacttg
gccaatgcattcttctcagttgaccttgctctagagagccaggaacagtttgccttgatg
acaatggactttcacagtgttgctgcagggctatgtgcatag

>gi568815595f:46398063_46600896|GENSCAN_predicted_peptide_3|754_aa
MKLVFLVLLFLGALGLCLAGRRRSVQWCAVSQPEATKCFQWQRNMRKVRGPPVSCIKRDS
PIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKG
GSFQLNELQGLKSCHTGLRRTAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPGA
DKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDE
AERDEYELLCPDNTRKPVDKFKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKD
KSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTAIQNLRKSEEEVAAR
RARVVWCAVGEQELRKCNQWSGLSEGSVTCSSASTTEDCIALVLKGEADAMSLDGGYVYT
AGKCGLVPVLAENYKSQQSSDPDPNCVDRPVEGYLAVAVVRRSDTSLTWNSVKGKKSCHT
AVDRTAGWNIPMGLLFNQTGSCKFDEYFSQSCAPGSDPRSNLCALCIGDEQGENKCVPNS
NERYYGYTGAFRCLAENAGDVAFVKDVTVLQNTDGNNNEAWAKDLKLADFALLCLDGKRK
PVTEARSCHLAMAPNHAVVSRMDKVERLKQVLLHQQAKFGRNGSDCPDKFCLFQSETKNL
LFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSRCHYVTHMDLGKLNKGGKRGN
KRQETKEYIWKKRSGGTLPLVDKGPELYTTLRSD

>gi568815595f:46398063_46600896|GENSCAN_predicted_CDS_3|2265_bp
atgaaacttgtcttcctcgtcctgctgttcctcggggccctcggactgtgtctggctggc
cgtaggaggagtgttcagtggtgcgccgtatcccaacccgaggccacaaaatgcttccaa
tggcaaaggaatatgagaaaagtgcgtggccctcctgtcagctgcataaagagagactcc
cccatccagtgtatccaggccattgcggaaaacagggccgatgctgtgacccttgatggt
ggtttcatatacgaggcaggcctggccccctacaaactgcgacctgtagcggcggaagtc
tacgggaccgaaagacagccacgaactcactattatgccgtggctgtggtgaagaagggc
ggcagctttcagctgaacgaactgcaaggtctgaagtcctgccacacaggccttcgcagg
accgctggatggaatgtccctatagggacacttcgtccattcttgaattggacgggtcca
cctgagcccattgaggcagctgtggccaggttcttctcagccagctgtgttcccggtgca
gataaaggacagttccccaacctgtgtcgcctgtgtgcggggacaggggaaaacaaatgt
gccttctcctcccaggaaccgtacttcagctactctggtgccttcaagtgtctgagagac
ggggctggagacgtggcttttatcagagagagcacagtgtttgaggacctgtcagacgag
gctgaaagggacgagtatgagttactctgcccagacaacactcggaagccagtggacaag
ttcaaagactgccatctggcccgggtcccttctcatgccgttgtggcacgaagtgtgaat
ggcaaggaggatgccatctggaatcttctccgccaggcacaggaaaagtttggaaaggac
aagtcaccgaaattccagctctttggctcccctagtgggcagaaagatctgctgttcaag
gactctgccattgggttttcgagggtgcccccgaggatagattctgggctgtaccttggc
tccggctacttcactgccatccagaacttgaggaaaagtgaggaggaagtggctgcccgg
cgtgcgcgggtcgtgtggtgtgcggtgggcgagcaggagctgcgcaagtgtaaccagtgg
agtggcttgagcgaaggcagcgtgacctgctcctcggcctccaccacagaggactgcatc
gccctggtgctgaaaggagaagctgatgccatgagtttggatggaggatatgtgtacact
gcaggcaaatgtggtttggtgcctgtcctggcagagaactacaaatcccaacaaagcagt
gaccctgatcctaactgtgtggatagacctgtggaaggatatcttgctgtggcggtggtt
aggagatcagacactagccttacctggaactctgtgaaaggcaagaagtcctgccacacc
gccgtggacaggactgcaggctggaatatccccatgggcctgctcttcaaccagacgggc
tcctgcaaatttgatgaatatttcagtcaaagctgtgcccctgggtctgacccgagatct
aatctctgtgctctgtgtattggcgacgagcagggtgagaataagtgcgtgcccaacagc
aacgagagatactacggctacactggggctttccggtgcctggctgagaatgctggagac
gttgcatttgtgaaagatgtcactgtcttgcagaacactgatggaaataacaatgaggca
tgggctaaggatttgaagctggcagactttgcgctgctgtgcctcgatggcaaacggaag
cctgtgactgaggctagaagctgccatcttgccatggccccgaatcatgccgtggtgtct
cggatggataaggtggaacgcctgaaacaggtgttgctccaccaacaggctaaatttggg
agaaatggatctgactgcccggacaagttttgcttattccagtctgaaaccaaaaacctt
ctgttcaatgacaacactgagtgtctggccagactccatggcaaaacaacatatgaaaaa
tatttgggaccacagtatgtcgcaggcattactaatctgaaaaagtgctcaacctcccgt
tgccactatgtaacccacatggacctagggaaactgaacaaagggggcaaacgtgggaat
aaaagacaagagacaaaagagtatatttggaagaagcggtcagggggcactttgcctcta
gtggacaagggccctgagctttacacaaccctccgtagtgattag

>gi568815595f:46398063_46600896|GENSCAN_predicted_peptide_4|443_aa
MPSSRPTALRLFLMAPLSSLGSLLEFLLTSNPAASRLVSGLQGKLSQNPCGHSVTSPEAE
GRYVGDKGQASCEGHVTVHWEVRRSSLLESQNGRECRYCWHSQREGRPAVRAGAQTSSPS
SRLPCGPEGSMLSCSTSCKPPVAQALKRPPVPTVCPCHWFPIPCSFVGLQTVACCLPNKF
LASASLTKPTCQGPGELDPPRHTIAPEMAGDTEVWKQMFQELMREVKPWHRWTLRPDKGL
LPNVLKPGWMQYQQWTFARFQCSSCSRNWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRC
KKCPQPLFEDPEFTQENISRILKNLVFRILKKCYRGRFQLIEEVPMIKDISLEGPHNSDN
LFFKKAFTIVFTLKRTESEVSMIHKPFGNLVKPVGPLTREFCTDPLRTCEHVTLCGTGDF
TDVIKVKDLEMGRVSSIIQLGSV

>gi568815595f:46398063_46600896|GENSCAN_predicted_CDS_4|1332_bp
atgccctcttcccgccccactgccctgagacttttcctaatggcccctctcagcagcctg
ggcagcctccttgaatttctgctcaccagtaacccagctgcgtcccgactggtctctggg
ctacaagggaagctttcccagaacccatgtggccactcagtcacttccccagaggctgaa
ggtcgctatgttggtgacaaagggcaggccagctgtgaaggccacgtcaccgtccactgg
gaagtgaggcggagctccctgctggagagccagaatgggcgggaatgcaggtactgctgg
cactcccagagggagggaaggcctgctgtccgtgctggcgcccagacttcctctccaagc
tcccgcctgccctgtggccccgaaggttccatgctgagctgcagcacttcctgcaagcct
ccagtggctcaggcgctcaaaaggcctcctgtccccactgtatgcccatgtcactggttc
ccgatcccctgctcctttgtcggcttacagacagtggcctgttgcctgcccaacaaattc
ctggccagcgccagcctgaccaaaccgacctgccagggcccaggagagctcgacccaccc
aggcacaccatagccccagagatggctggggacacagaagtgtggaagcaaatgtttcag
gagttaatgcgggaggtgaagccatggcacaggtggaccctgagaccagacaagggcctt
cttcccaacgtcctgaagccaggctggatgcaataccagcagtggaccttcgccaggttc
cagtgctcctcctgctctcgtaactgggcctctgcccaagttctggtccttttccacatg
aactggagtgaggagaagtccaggggccaggtgaagatgagggtgtttacccagagatgt
aagaagtgcccccaacctctgtttgaggaccctgagttcacacaagagaacatctcaagg
atcctgaaaaacctggtgttccgaattctgaagaaatgctatagaggaagatttcagttg
atagaggaggttcctatgatcaaggacatctctcttgaagggccacacaatagtgacaac
ttattttttaaaaaggccttcacaattgtgttcactctcaagagaactgagtctgaagtg
tctatgattcataaaccatttggaaatcttgtgaagcctgtgggccccctcaccagggaa
ttttgcacagaccctctgagaacctgtgaacatgtaaccttatgtggcacaggggacttt
acagatgtgattaaggtgaaggaccttgagatggggagagtgtcctccatcatccagctg
ggctcagtataa

>gi568815595f:46398063_46600896|GENSCAN_predicted_peptide_5|360_aa
MGHKVVVFDISVIRALWETRVKKHKAWQKKEVERLEKSALEKIKEEWNFVAECRRKGIPQ
AVYCKNGFIDTSVRLLDKIERNTLTRQSSLPKDRGKRSSAFVFELSGEHWTFYPRTLELG
EALDTEFINVISAVETQGGGVTGKWQGLGRNSGCLKNLKELNVGFNYLKSIPPELGDCEN
LERLDCSGNLELMELPFELSNLKQVTFVDISANKFSSVPICVLRMSNLQWLDISSNNLTD
LPQDIDRLEELQSFLLYKNKLTYLPYSMLNLKKLTLLVVSGDHLVELPTALCDSSTPLKF
VSLMDNPIDNAQCEDGNEIMESERDRQHFDKEVMKAYIEDLKERESVPSYTTKVSFSLQL

>gi568815595f:46398063_46600896|GENSCAN_predicted_CDS_5|1083_bp
atgggacataaagtggttgtcttcgacatttctgtcatcagagccttgtgggaaactcgt
gtcaagaagcacaaagcttggcagaagaaggaggtggaaaggcttgagaagagcgccttg
gagaagataaaggaggagtggaactttgtggccgaatgcaggaggaagggcatcccccag
gctgtatactgcaagaatggcttcatagacaccagcgtgcggcttctggacaagattgaa
aggaacactctcacaaggcagagttcacttcccaaggacagaggcaaacggagcagtgcg
tttgtgtttgaactttctggggagcactggacgttttatcccagaacacttgagctaggg
gaggccttggacactgagttcatcaatgtcatttcagcagtggagacccagggaggtggc
gtgactggaaaatggcagggcctgggccggaactcaggttgtttgaagaacctgaaagaa
ctcaatgtgggtttcaactatctgaagagcattcctccagaattgggagattgtgaaaat
ctagagagactggattgttctggaaatctagaattaatggagctgccctttgaattaagt
aatttgaagcaagttacatttgtagatatctcagcaaacaagttttccagtgtcccaatc
tgtgtcctgcggatgtcgaatttgcagtggttggatatcagcagcaataacctgaccgac
ctgccgcaagatatagacaggctagaggagctgcagagctttctcttgtataaaaacaag
ttgacctaccttccctattccatgctgaacctgaagaagctcactctgttagtcgtcagt
ggggaccatttggtggagctcccaactgccctttgtgactcatccacacctttaaaattt
gtaagccttatggacaatcctattgataatgcccaatgtgaagatggcaatgaaataatg
gaaagtgaacgggatcgccaacattttgataaagaagttatgaaagcctatattgaagac
cttaaagaaagagaatctgttcccagctataccaccaaagtgtcttttagccttcaactt
tga

>gi568815595f:46398063_46600896|GENSCAN_predicted_peptide_6|180_aa
MKYYFSHTVLTKFKMLAAARPGLGHQEFARPSRGYLAFRDDSIWPQEEPAIRPRSSQRVP
PMGIQHSKELNRTCCLNGGTCMLGSFCACPPSFYGRNCEHDVRKENCGSVPHDTWLPKKC
SLCKCWHGQLRCFPQAFLPGCDGLVMDEHLVASRTPELPPSARTTTFMLVGICLSIQSYY

>gi568815595f:46398063_46600896|GENSCAN_predicted_CDS_6|543_bp
atgaaatactacttttcacatactgtattaacaaaatttaagatgcttgctgcagccaga
cctgggctgggccatcaggaatttgctcgtccatctcggggatacctggccttcagagat
gacagcatttggccccaggaggagcctgcaattcggcctcggtcttcccagcgtgtgccg
cccatggggatacagcacagtaaggagctaaacagaacctgctgcctgaatgggggaacc
tgcatgctggggtccttttgtgcctgccctccctccttctacggacggaactgtgagcac
gatgtgcgcaaagagaactgtgggtctgtgccccatgacacctggctgcccaagaagtgt
tccctgtgtaaatgctggcacggtcagctccgctgctttcctcaggcatttctacccggc
tgtgatggccttgtgatggatgagcacctcgtggcttccaggactccagaactaccaccg
tctgcacgtactaccacttttatgctagttggcatctgcctttctatacaaagctactat
taa

>gi568815595f:46398063_46600896|GENSCAN_predicted_peptide_7|53_aa
XIGVCHGELTIWNWDKSENYWFTPHNQHQKYLCRPVLTPGMRLARSAGKRRDS

>gi568815595f:46398063_46600896|GENSCAN_predicted_CDS_7|162_bp
nncattggcgtctgccatggagagctcactatatggaactgggacaaatctgagaactac
tggtttacaccacacaatcagcatcagaaatacctgtgcagaccagtattgaccccgggg
atgcggctggccaggtctgcagggaagcgcagagactcctag