GENSCAN 1.0	Date run:  6-Nov-116	Time: 17:56:09

Sequence gi568815595r:8652980_8868187 : 215208 bp : 44.86% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   5145   5254  110  2  2   63   89    77 0.230   4.38
 1.02 Intr +   6001   6062   62  1  2   78   88    20 0.221  -0.62
 1.03 Intr +   8591   8721  131  0  2   30   90   102 0.831   5.01
 1.04 Intr +  22079  22301  223  1  1   36   38   165 0.385   4.00
 1.05 Intr +  22470  22564   95  1  2   32   82   113 0.437   4.78
 1.06 Term +  31863  31946   84  2  0  101   49    74 0.358   2.45
 1.07 PlyA +  34655  34660    6                               1.05

 2.00 Prom +  34937  34976   40                              -6.86
 2.01 Init +  35255  35690  436  1  1   45  -15   326 0.239  13.33
 2.02 Intr +  35850  36176  327  1  0   96   72    77 0.110   2.57
 2.03 Intr +  39266  39350   85  0  1   57   13    98 0.037  -1.92
 2.04 Intr +  44182  44396  215  1  2    4   77   155 0.033   4.36
 2.05 Intr +  55928  56116  189  0  0  106   93   -13 0.051   0.56
 2.06 Intr +  56987  57099  113  0  2   76   81    -3 0.039  -2.10
 2.07 Intr +  61243  61353  111  0  0   97   72    39 0.270   3.78
 2.08 Intr +  62275  62379  105  0  0   83   61    64 0.349   3.61
 2.09 Intr +  64166  64712  547  1  1  -98   58   304 0.001   1.26
 2.10 Intr +  66291  66948  658  1  1   44    5   311 0.021   9.30
 2.11 Intr +  67307  68458 1152  2  0   17   53   309 0.103   8.44
 2.12 Intr +  80192  80354  163  2  1   99   49   123 0.467   9.48
 2.13 Intr +  80835  81011  177  2  0   50  102   234 0.808  21.12
 2.14 Intr +  85310  85465  156  1  0   87   42    74 0.625   2.91
 2.15 Term +  92547  92888  342  2  0  100   42   618 0.737  52.91
 2.16 PlyA +  93760  93765    6                               1.05

 3.03 PlyA -  97438  97433    6                               1.05
 3.02 Term - 100245  99998  248  1  2   94   46   355 0.999  27.85
 3.01 Init - 100573 100528   46  1  1   50   80    59 0.871   2.15
 3.00 Prom - 107389 107350   40                              -5.86

 4.02 PlyA - 111539 111534    6                               1.05
 4.01 Sngl - 115208 114171 1038  2  0   83   44  1991 0.982 191.33
 4.00 Prom - 118803 118764   40                              -4.66

 5.00 Prom + 120965 121004   40                              -4.36
 5.01 Init + 124508 124557   50  1  2   65   99    40 0.760   3.22
 5.02 Intr + 125727 125863  137  0  2   83   80    39 0.512   2.81
 5.03 Intr + 151191 151297  107  1  2   39   41   130 0.095   3.33
 5.04 Intr + 158091 158246  156  2  0   47   92    75 0.104   4.01
 5.05 Term + 162927 162968   42  2  0   91   54    16 0.025  -4.34
 5.06 PlyA + 164439 164444    6                               1.05

 6.04 PlyA - 165950 165945    6                               1.05
 6.03 Term - 169562 169456  107  0  2  107   42    63 0.138   2.17
 6.02 Intr - 187318 187217  102  2  0   95   75    19 0.431   1.45
 6.01 Init - 202062 201921  142  0  1   86   82    94 0.902   8.90
 6.00 Prom - 214764 214725   40                              -3.26


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  64274  65017  744  1  0   49   43   302 0.836  18.00


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:8652980_8868187|GENSCAN_predicted_peptide_1|234_aa
LLHQKTGDDPHGDIYYRLRDDDMCKQLAECLWLAESHSPKRYYYKAHFLEKETMVQRGGV
RDSRIRDKGLYYHSNSNSQTIKVFAPVPSASVSTGPHEEGQPRTKDYRPVQDLCLLNQAT
LTLHPTVPNPSTLLGLLPAEDSWFTCLDLKDAFFPIRLSPERQKLFAFQWEDPESVGCPK
GTDALHQHLEDCGYKASKKKAQICRQQGIQNNRTGGVYTLCDIESHIILFRSGY

>gi568815595r:8652980_8868187|GENSCAN_predicted_CDS_1|705_bp
cttctacatcagaaaactggggatgaccctcatggagatatttattacaggctaagagat
gacgacatgtgtaagcagttagcggagtgcctgtggctagcagaatctcacagccctaag
aggtactattacaaggcccattttctagaaaaggaaactatggttcagagaggaggcgtg
agagactcccgaatccgagacaaaggactttattatcacagcaacagcaatagccagaca
atcaaggtttttgcaccagtgccctcagcctcagtttccacaggaccacatgaagagggc
cagccacggaccaaggactaccggccagtacaggatttgtgcttgcttaatcaagctaca
ctgactttacatccaacagtacctaacccgtccacattgttgggtttgctgccagctgag
gacagctggttcacctgcttggacctgaaagacgctttctttcctatcagattatcccct
gagaggcagaagctgtttgcctttcagtgggaagatccggagtcagtcgggtgtcccaag
ggaacagatgccctacaccagcacctggaggactgtgggtataaggcgtccaagaagaaa
gctcagatctgccgacagcagggtattcagaacaataggacaggaggggtgtacaccctc
tgcgatattgagagtcatatcatcctctttcgctctggatattag

>gi568815595r:8652980_8868187|GENSCAN_predicted_peptide_2|1591_aa
MGLSEDPELQPVLAGLSLSMCLVTVLRNLLSILAVSSDSHLHTPMYFFLSNLCWADIGFT
SATVPKIIVDMQSHSRVISYVGCLTRMSFLVLFACIEDMLLTVMAYDCFVAICRPLHYPV
IVNPHLRVFLVLVSFFLSLLDSQLHRILLSYCKIVPSILRISTSDGKYKAFSTCGSHLAL
VCLFYGAGIGVYLTSAVSPPPRNGVVVSVMYTVVTPMLNPFIYSLRNRDIQSTLRRLLSR
TVESHDLFHPFSCVGKRKSNQECDTTHLDGCDKQTSIGETRGKEYTLCDSRSNLTQGYKE
QIQRMHTCCDISSNIHLGYYEYYHNVNTPCDIRSNIPLQYWEPYHTVYTPCDIREDPGFQ
HPEIVQRKRERETPLVPPPWDVPKDHAVAPTPTPRFLVYKGPPCLQSPLRLTRVLRKGRP
MNRGSRWPSVAAVTAQHKAKHFYLLYHSKAASACKGSNSPKQAPGPKESPRQGNIECQAQ
GIRPSGHLDTVRLQELPPLHQEELTYQGDSLETACPIKAMIPNLTLQLREDIQTKGKEVE
NFEKNLEECITRITNTEKCLKELMELKTKARELRKECSSLRSRCHQLEERVSAMEDEMNE
MKWEGKFREKRIKRNKQSLQEIWDYVKRPNLRLIGVPESDGENGTKLENTLQDIVQNFPN
LARQTNVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAREKEIQTTIREYYK
HLYANKLENLEEMDKFLDTYTLPRLNQEEVESLNRPITGSEIVAIINSLPTKKSPGPDGF
TAEFYQRYKEELVPFLLQLFQSIEKEGILPNSFYEASIILIPKAGRDTTKKENFRPISLM
NVDAKILNKILAKRIQQHIKKLIHHDQVGFIPGMQGWFNIRKSINVIQHINRAKDKNHMI
ISIDAEKAFDKIQQPFMLKTLNKLGIDGTNRQTESQIMSELPFTIASKRIKYLAIQLTRD
VKDLFKENYKPLLKEIKEDTNKWKNIPCSWVGRINIVKMAILPKVIYRVNAIPIKLPMTF
FTELEKTTLKFIWNQKRARIAKSILSQKNKAGGITLPDFKLYYKATVTKTAWYWDQNRDI
DQWNRTEPSEIMPHIYNCLIFDKPEKNKQWGKDSLFNKWCWENWLAICRKLKLDPFLTPY
TKINSRWIKDLNVRPKTIKTLEENLGNTIQDTGMGKDFMSKTPKAMATKDKIDKWDLIKL
KSFCTAKETTIRVNRQPTKWEKIFATYSSDKGLISRIYNELQQIYKKKTNNPIKKWAKDM
DRHFSKEDIYAAKKHMKKCSPSLAIREMQIKTTMRYHLTPVSMAIIKKSGNNSLAPHHSP
STPAPGGNLRNPQSSDLLQVTKQQGQALAIQREAPLHRIPAPEAIPWYFQPQPATQLGSP
PVDPPSSAMMAEEHTDLEAQIVKDIHCKEIDLVNRDPKNINEDIVKNACLLQKNKHPFAP
RLRLHNTQRNQMPTSPTNTCSRFVLIRDTLLHKEETDLVDFEDVIAEPVGTYSFDGVWKV
SYTTFTVSKYWCYRLLSTLLGVPLALLWGFLFACISFCHIWAVVPCIKSYLIEIQCISHI
YSLCIRTFCNPLFAALGQVCSSIKVVLRKEV

>gi568815595r:8652980_8868187|GENSCAN_predicted_CDS_2|4776_bp
atgggactctcagaggatccagaactgcagcccgtcctcgctgggctgtccctgtccatg
tgtctggtcacggtgctgaggaacctgctcagcatcctggctgtcagctctgactcccac
ctccacacccccatgtacttcttcctctccaacctgtgctgggctgacatcggtttcacc
tcggccacggttcccaagataattgtggacatgcagtcgcatagcagagtcatctcttat
gtgggctgcctgacacggatgtcttttttggtcctttttgcatgtatagaagacatgctt
ctgactgtgatggcctatgactgctttgtagccatctgtcgccctctacactacccagtc
atcgtgaatcctcacctccgtgtcttcttagttttggtgtcctttttccttagcctgttg
gattcccagctgcacaggatccttttgtcttactgtaaaattgttccctccattctaagg
atttcaacatcagatgggaaatataaagccttctccacctgtggctctcacctggcactt
gtttgcttattttatggagcaggcattggcgtgtacctgacttcagctgtgtcaccaccc
cccaggaatggtgtggtggtgtcagtgatgtacactgtggtcacccccatgctgaaccct
ttcatctacagcctgagaaacagggacattcaaagcaccctgaggaggctgctcagcaga
acagtcgaatctcatgatctgttccatcctttttcttgtgtggggaagcgcaaatccaac
caagaatgtgataccacacatttggatggatgtgataaacaaacgagcattggtgaaact
agagggaaggagtacaccctgtgtgacagtaggagtaacctcacccaaggatataaggaa
caaatacagaggatgcacacgtgttgtgacattagcagtaacatccatttaggatattac
gaatattaccacaatgtgaataccccctgtgatattaggagtaacatccccctacaatat
tgggaaccatatcacacggtgtacaccccctgtgacattagagaagacccaggctttcag
cacccagagattgtgcagaggaagagagagagagagacaccactggtgcccccaccttgg
gacgtgcctaaagatcatgcggtagcccctacccccacccccaggtttctggtttataaa
ggacctccatgtcttcaatctcccctgagactcacaagagtcctgagaaaagggaggccc
atgaaccgaggaagcaggtggccatctgtggcagctgtcacagcccagcataaagctaag
cacttctacttattatatcattcaaaagctgcctcagcctgcaagggcagtaattcccca
aagcaggctccagggcccaaggaaagccctcggcagggaaacattgagtgtcaggcacag
ggaatcaggccatcgggtcacctggacaccgtaaggctccaagagctgccccctctccac
caggaggaactgacttaccaaggtgacagtctagagactgcttgcccaattaaagccatg
atccccaatctcacactccaactacgggaggacattcaaaccaaaggcaaagaagttgaa
aactttgaaaaaaatttagaagaatgtataactagaataaccaatacggagaagtgctta
aaggagctgatggagctgaaaaccaaggctcgagaactacgtaaagaatgcagtagcctc
aggagccgatgccatcaactggaagaaagggtatcagcaatggaagatgaaatgaatgaa
atgaagtgggaagggaagtttagagaaaaaagaataaaaagaaataagcaaagcctccaa
gaaatatgggactatgtgaaaagaccaaatctacgtctcattggtgtacctgaaagtgac
ggggagaatggaactaagttggaaaacactctgcaggatatcgtccagaacttccccaat
ctagcaaggcagaccaatgttcagattcaggaaatacagagaacgccacaaagatactcc
tcgagaagagcaactccaagacacataattgtcagattcaccaaagttgaaatgaaggaa
aaaatgttaagggcagccagagagaaagaaatacaaactaccatcagagaatactacaaa
cacctctacgcaaataaactagaaaatctagaggaaatggataaattccttgacacatac
actctcccaagactaaaccaggaagaagttgaatctctgaatagaccaataacaggctct
gaaattgtggcaataatcaatagcttaccaaccaaaaagagtccaggaccagatggattc
acagccgaattctaccagaggtacaaggaggaactggtaccattccttctacaactattc
caatcaatagaaaaagagggaatcctccctaactcattttatgaggccagcatcatcctg
ataccaaaggctggcagagacacaaccaaaaaagagaattttagaccaatatccttgatg
aacgttgatgcaaaaatcctcaataaaatattggcaaaacgaatccagcagcacatcaaa
aagcttatccaccatgatcaagtgggcttcatccctgggatgcaaggctggttcaatata
cgcaaatcaataaatgtaatccagcatataaacagagccaaagacaaaaaccacatgatt
atctcaatagatgcagaaaaggcctttgacaaaattcaacaacccttcatgctaaaaact
ctcaataaattaggtattgatgggaccaacagacaaacagagagccaaatcatgagtgaa
ctcccattcacaattgcttcaaagagaataaaatacctagcaatccaacttacaagggat
gtgaaggacctcttcaaggagaactacaaaccactgctcaaggaaataaaagaggataca
aacaaatggaagaacattccatgctcatgggtaggaagaatcaatatcgtgaaaatggcc
atactgcccaaggtaatttacagagtcaatgccatccccatcaagctaccaatgactttc
ttcacagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagcccgcatc
gccaagtcaatcctaagccaaaagaacaaagctggaggcatcacactacctgacttcaaa
ctatactacaaggctacagtaaccaaaacagcatggtactgggaccaaaacagagatata
gatcaatggaacagaacagagccctcagaaataatgccacatatctacaactgtctgatc
tttgacaaacctgagaaaaacaagcaatggggaaaggattccctatttaataaatggtgc
tgggaaaactggctagccatatgtagaaagctgaaactggatcccttccttacaccttat
acaaaaatcaattcaagatggattaaagacttaaacgttagacctaaaaccataaaaacc
ctagaagaaaacctaggcaataccattcaggacacaggcatgggcaaggacttcatgtct
aaaacaccaaaagcaatggcaacaaaagacaaaattgacaaatgggatctaattaaacta
aagagcttctgtacagcaaaagaaactaccatcagagtgaacaggcaacccacaaaatgg
gagaaaattttcgcaacctactcatctgacaaagggctaatatccagaatctacaatgaa
ctccaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaaggacatg
gacagacacttctcaaaagaagacatttatgcagccaaaaaacacatgaaaaaatgctca
ccatcactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacacca
gttagcatggcaatcattaaaaagtcaggaaacaacagcctggccccacaccacagtcca
tcaactcctgctccaggtggaaacctcagaaacccacaaagctcggacctgctccaggtc
accaagcagcagggccaggcactggcaatccaacgagaagccccactacatcgcattcca
gctcctgaagccattccctggtattttcagccccagccggccacacagctcggatctcct
cctgtggatccccccagctctgcgatgatggcagaagagcacacagatctcgaggcccag
atcgtcaaggatatccactgcaaggagattgacctggtgaaccgagaccccaagaacatt
aacgaggacatagtcaagaacgcctgccttcttcagaaaaacaaacacccatttgccccc
cggctcaggctacacaacacccagaggaaccagatgcccaccagccctacaaacacttgt
tccaggtttgtgctcatcagggacaccctgttgcacaaagaagaaactgacctggtggat
tttgaagacgtgatcgcagagcctgtgggcacctacagctttgacggcgtgtggaaggtg
agctacaccaccttcactgtctccaagtactggtgctaccgtctgttgtccacgctgctg
ggcgtcccactggccctgctctggggcttcctgttcgcctgcatctccttctgccacatc
tgggcggtggtgccatgcattaagagctacctgatcgagatccagtgcatcagccacatc
tactcactctgcatccgcaccttctgcaacccactcttcgcggccctgggccaggtctgc
agcagcatcaaggtggtgctgcggaaggaggtctaa

>gi568815595r:8652980_8868187|GENSCAN_predicted_peptide_3|97_aa
MHEKVAVMDSASAEGASAFIIVMLLASLNSCCNPWIYMLFTGHLFHELVQRFLCCSASYL
KGRRLGETSASKKSNSSSFVLSHRSSSQRSCSQPSTA

>gi568815595r:8652980_8868187|GENSCAN_predicted_CDS_3|294_bp
atgcatgaaaaggtggctgtgatggattcagcttctgctgagggagcctcggccttcatc
atcgtcatgctcctggccagcctcaacagctgctgcaacccctggatctacatgctgttc
acgggccacctcttccacgaactcgtgcagcgcttcctgtgctgctccgccagctacctg
aagggcagacgcctgggagagacgagtgccagcaaaaagagcaactcgtcctcctttgtc
ctgagccatcgcagctccagccagaggagctgctcccagccatccacggcgtga

>gi568815595r:8652980_8868187|GENSCAN_predicted_peptide_4|345_aa
MEGALAANWSAEAANASAAPPGAEGNRTAGPPRRNEALARVEVAVLCLILLLALSGNACV
LLALRTTRQKHSRLFFFMKHLSIADLVVAVFQVLPQLLWDITFRFYGPDLLCRLVKYLQV
VGMFASTYLLLLMSLDRCLAICQPLRSLRRRTDRLAVLATWLGCLVASAPQVHIFSLREV
ADGVFDCWAVFIQPWGPKAYITWITLAVYIVPVIVLAACYGLISFKIWQNLRLKTAAAAA
AEAPEGAAAGDGGRVALARVSSVKLISKAKIRTVKMTFIIVLAFIVCWTPFFFVQMWSVW
DANAPKEGSQGWETQEEGAWWLGEALILLPQNVQGSVDFLGDKRV

>gi568815595r:8652980_8868187|GENSCAN_predicted_CDS_4|1038_bp
atggagggcgcgctcgcagccaactggagcgccgaggcagccaacgccagcgccgcgccg
ccgggggccgagggcaaccgcaccgccggacccccgcggcgcaacgaggccctggcgcgc
gtggaggtggcggtgctgtgtctcatcctgctcctggcgctgagcgggaacgcgtgtgtg
ctgctggcgctgcgcaccacacgccagaagcactcgcgcctcttcttcttcatgaagcac
ctaagcatcgccgacctggtggtggcagtgtttcaggtgctgccgcagttgctgtgggac
atcaccttccgcttctacgggcccgacctgctgtgccgcctggtcaagtacttgcaggtg
gtgggcatgttcgcctccacctacctgctgctgctcatgtccctggaccgctgcctggcc
atctgccagccgctgcgctcgctgcgccgccgcaccgaccgcctggcagtgctcgccacg
tggctcggctgcctggtggccagcgcgccgcaggtgcacatcttctctctgcgcgaggtg
gctgacggcgtcttcgactgctgggccgtcttcatccagccctggggacccaaggcctac
atcacatggatcacgctagctgtctacatcgtgccggtcatcgtgctcgctgcctgctac
ggccttatcagcttcaagatctggcagaacttgcggctcaagaccgctgcagcggcggcg
gccgaggcgccagagggcgcggcggctggcgatggggggcgcgtggccctggcgcgtgtc
agcagcgtcaagctcatctccaaggccaagatccgcacggtcaagatgactttcatcatc
gtgctggccttcatcgtgtgctggacgcctttcttcttcgtgcagatgtggagcgtctgg
gatgccaacgcgcccaaggaaggtagccagggctgggagacccaggaggagggagcctgg
tggctgggggaggcccttatcttgctgcctcagaatgtccaggggtctgtggacttcctg
ggggataagcgggtttga

>gi568815595r:8652980_8868187|GENSCAN_predicted_peptide_5|163_aa
MEKENTPEESEALKHFCTNPYSQSLADSSQFHCTAASVALAHPICLLSTHADLPVPGLAP
QAEWPKSKTLKTPNAGEDVEQKKVSSIAGGKAKWYNYFAFVGFSCPPQGSQHHAGKSAGP
CSGDGAPETLPYLDKSLKPLSLHSLICEKQSCDSNSEELRPKL

>gi568815595r:8652980_8868187|GENSCAN_predicted_CDS_5|492_bp
atggaaaaagagaataccccggaggaatctgaagctctcaaacacttctgcacaaacccg
tactcccagtccttagcagactcttctcaattccactgcacagctgcttctgtggccctg
gcccaccctatctgcctcctttccacccacgctgatcttcctgtaccaggcttggctccc
caagcagaatggccaaaatccaaaacactgaaaacaccaaatgctggtgaggatgtggag
caaaagaaagtctcatccattgctggtgggaaagcaaaatggtacaactactttgccttc
gtgggctttagctgccctccccagggcagtcagcaccatgctggcaagagtgcaggtccg
tgctcaggagatggggcaccagaaaccctcccctatctggacaagtcactgaagcccctg
agcctccattccctcatctgtgaaaagcagtcatgtgattctaattcagaggaactaaga
cctaagctttga

>gi568815595r:8652980_8868187|GENSCAN_predicted_peptide_6|116_aa
MGGCKEAACDRVKSGQFWDQDPKGHNVFVNPPQKAFHRNFVLQNSSPEDFTFESLLNSKT
EQLPEGFCCCDQTLSAGETLSGHNPGTDSEPCSPIDDSLLSLVNSIIKTIQPVFQE

>gi568815595r:8652980_8868187|GENSCAN_predicted_CDS_6|351_bp
atggggggctgtaaggaggcagcatgtgacagggtgaagagtgggcagttttgggatcaa
gatcccaaggggcacaacgtctttgtaaatcctccacaaaaggccttccacagaaacttt
gtacttcaaaattccagccctgaggactttacatttgaaagccttttaaactccaagact
gaacaactgccagagggattttgctgctgtgaccagacactttcagctggagagacactt
tcaggacacaatccagggactgattcagaaccttgttcaccaatagatgattccttgctt
tccttggtaaactccatcatcaaaaccatccaaccagtcttccaggagtag