GENSCAN 1.0	Date run:  8-Nov-116	Time: 04:55:08

Sequence gi568815596f:237466574_237667172 : 200599 bp : 50.05% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1105   1146   42  0  0  105   80     2 0.043   1.56
 1.02 Intr +   4801   4971  171  0  0   11   58   113 0.119   0.74
 1.03 Intr +  11216  11345  130  1  1   97   63    52 0.369   3.87
 1.04 Intr +  14505  14666  162  1  0   85   -7   107 0.247   0.85
 1.05 Intr +  16667  16804  138  0  0   75   77    42 0.405   2.24
 1.06 Intr +  19694  19736   43  0  1   89   82    56 0.590   2.40
 1.07 Intr +  20108  20252  145  2  1   74   50    56 0.372   0.68
 1.08 Intr +  20825  20864   40  1  1  141  117     8 0.496   6.80
 1.09 Intr +  30994  31171  178  2  1   61   27   160 0.176   6.18
 1.10 Intr +  34534  34550   17  1  2  122   81     9 0.020  -1.21
 1.11 Intr +  37216  37237   22  2  1  110   91    29 0.000   2.00
 1.12 Intr +  44001  44222  222  0  0   48   99   237 0.006  18.04
 1.13 Intr +  44416  44528  113  1  2   87   94   184 0.996  18.92
 1.14 Term +  45622  45761  140  2  2   70   41    72 0.642  -1.17
 1.15 PlyA +  47276  47281    6                               1.05

 2.03 PlyA -  47692  47687    6                               1.05
 2.02 Term -  48765  48536  230  1  2   46   39   180 0.561   5.69
 2.01 Init -  49388  49322   67  2  1   36   73    98 0.958   2.36
 2.00 Prom -  50096  50057   40                               1.34

 3.00 Prom +  50896  50935   40                             -14.38
 3.01 Init +  51947  52075  129  1  0   84  106   141 0.984  15.65
 3.02 Intr +  53337  53456  120  2  0   49   82   123 0.823   8.49
 3.03 Intr +  53495  53524   30  1  0   97   94    10 0.385   0.83
 3.04 Intr +  56730  56754   25  2  1   50   91   -10 0.201  -6.90
 3.05 Intr +  59038  59232  195  2  0   78   86    79 0.580   6.09
 3.06 Intr +  60804  60943  140  1  2   32   97   146 0.943  10.08
 3.07 Intr +  67991  68074   84  1  0  117   87    92 0.997  12.02
 3.08 Intr +  71253  71418  166  2  1   69   55    87 0.942   3.03
 3.09 Intr +  73068  73141   74  1  2  128   47    34 0.876   2.43
 3.10 Intr +  73775  73960  186  1  0   24   94   285 0.927  22.59
 3.11 Intr +  74229  74384  156  2  0  127   53   174 0.999  18.01
 3.12 Intr +  75994  76086   93  0  0  131  117    73 0.997  14.66
 3.13 Intr +  80033  80110   78  1  0  108   95    36 0.805   6.05
 3.14 Intr +  82648  82705   58  0  1   81  116    20 0.956   2.56
 3.15 Term +  85764  85888  125  1  2   97   55   128 0.758   8.95
 3.16 PlyA +  88718  88723    6                               1.05

 4.03 PlyA -  89482  89477    6                               1.05
 4.02 Term -  91098  90966  133  2  1   92   48    91 0.758   3.06
 4.01 Init -  92793  92714   80  0  2   78   69   115 0.683   7.13
 4.00 Prom -  96493  96454   40                              -5.06

 5.00 Prom +  97139  97178   40                              -5.16
 5.01 Init + 100001 100100  100  1  1   55   73   291 0.941  22.72
 5.02 Term + 100439 100602  164  0  2   94   48   157 0.967  10.40
 5.03 PlyA + 100686 100691    6                               1.05

 6.09 PlyA - 101047 101042    6                               1.05
 6.08 Term - 108555 108446  110  1  2  109   43    84 0.963   4.67
 6.07 Intr - 109058 108814  245  1  2   45   92   269 0.900  20.14
 6.06 Intr - 109335 109289   47  0  2   73   94    34 0.916  -0.29
 6.05 Intr - 110809 110684  126  1  0  134   86   200 0.980  25.28
 6.04 Intr - 111582 111431  152  1  2  113   97   194 0.990  22.68
 6.03 Intr - 119584 119425  160  1  1   85   87    64 0.191   5.56
 6.02 Intr - 124911 124837   75  0  0   91   96    53 0.739   6.11
 6.01 Init - 128918 128832   87  2  0   68   96    43 0.176   2.03
 6.00 Prom - 136530 136491   40                              -4.36

 7.00 Prom + 137693 137732   40                              -7.06
 7.01 Init + 139717 140026  310  0  1   67   79   120 0.625   6.48
 7.02 Intr + 144875 145007  133  0  1   91   87    24 0.194   2.30
 7.03 Intr + 146606 146680   75  2  0   94  107    20 0.403   3.13
 7.04 Intr + 160637 160784  148  2  1  100   19   116 0.364   6.14
 7.05 Intr + 161054 161167  114  1  0    2   83   197 0.199  11.24
 7.06 Intr + 173269 173411  143  0  2   69    7    78 0.134  -3.05
 7.07 Intr + 173865 174021  157  0  1   89   86   107 0.152  10.61
 7.08 Term + 178138 178200   63  0  0  117   49    24 0.064  -0.71
 7.09 PlyA + 179649 179654    6                              -0.45

 8.05 PlyA - 179693 179688    6                               1.05
 8.04 Term - 181207 181186   22  0  1  111   48    15 0.031  -2.42
 8.03 Intr - 181673 181417  257  2  2   68  108    49 0.532   1.14
 8.02 Intr - 185569 185313  257  2  2   84   22   192 0.256   9.36
 8.01 Init - 197878 197806   73  1  1   81   72    32 0.306   2.22

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  26854  26963  110  0  2   90   70   160 0.980  14.09
S.002 Init -  41235  41043  193  0  1   66   85   160 0.844  12.63
S.003 Init +  43963  44222  260  0  2   75   99   217 0.953  18.11


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:237466574_237667172|GENSCAN_predicted_peptide_1|520_aa
MDLVWISPVLRVLMVCSEEICDYAHLRHYGKSDATTRQSLKLIEIETGRAPEQSRVDGHV
QNRDSPPAAKLFPEQLEKLALIPGPATEFSHALSVTQTCQPSKSLPKWIAAVFPTWAHEG
GSGFEFLHLLFTAFLLLAVPGPMNQSPLLWLLPAPGAVEIQAQSPLDLGSLSTCREEAKP
KATPQWDLPDQLSLELGYAQAVKLKGASLKPIFGDRKTELQKRFLENRIRAARGCGTLLV
LMPGRIEGVRVRSLQQKALGLKSYLLFGVATYWSVALVLDQGLSVPRRGSGGVDAVQGHR
GNKHRKKALVLGTKIGSAEELAKIPEIHDETEDNSYNNEPPSLSFIIANLASPMPSCGDA
YRWALKGKIKKESSKRELLSDTAHLNETHCARCLQPYQLLVNSKRQCLECGLFTCKSCGR
VHPEEQGWICDPCHLARVVKIGSLEWYYEHVKARFKRFGSAKVIRSLHGRLQGGGLPSGE
TPYSCLSLKASSLIEEAEVGIDTFEHSSSRRACCRHFKAS

>gi568815596f:237466574_237667172|GENSCAN_predicted_CDS_1|1563_bp
atggaccttgtttggatttcaccagttttacgtgtgctcatggtctgttcagaagaaatc
tgtgattatgcgcatctcagacactatgggaagtcagatgcgaccacccgccagtcactc
aagctgatcgagatagaaacagggagggctccagagcagagccgggtagatggacacgtt
caaaacagggacagtccccctgctgcaaagctgttccctgaacaactagagaagcttgca
ttaatacctggacctgctacagaattttctcacgctctaagcgtcactcaaacctgccag
ccttccaaatcacttcccaaatggattgcagcagtattcccaacatgggcccatgagggg
ggctctggttttgaatttctacatctgctcttcacagctttcctgcttctggctgtgcca
ggccccatgaaccagtcacccctgctgtggctgttgcctgccccaggcgctgtggaaatc
caggctcagagccccttagacctgggttccctatccacgtgcagagaggaggctaagccc
aaggccacccctcagtgggacttgcctgaccagttatccttggaactggggtatgcccag
gcagtgaaattaaagggtgcttctctgaagcccatctttggtgataggaaaactgaattg
caaaagcggttcctggagaacagaatcagggctgcccgcggctgcgggaccctcctggtc
ctgatgcctggcagaatcgaaggggtgagggtacgctctctgcagcagaaagccctgggc
ttaaagtcctatttattatttggcgttgccacttactggtcggtggctttggtgctggac
cagggactgagcgtcccccggagagggtccggtggtgtggacgctgtgcaaggccacaga
ggaaacaagcatagaaaaaaggctctggttcttggcaccaaaattggttctgcagaggag
ctggcgaaaataccagaaatccatgatgaaacggaagataactcttacaataatgaacct
ccttccctgtctttcatcattgctaatctcgcttctccaatgcccagctgtggggatgct
taccggtgggcgttgaagggcaagattaagaaggaaagctccaagagggagctgctttcc
gacactgcccatctgaacgagacccactgcgcccgctgcctgcagccctaccagctgctt
gtgaatagcaaaaggcagtgcctggaatgtggcctcttcacctgcaaaagctgtggccgc
gtccacccggaggagcagggctggatctgtgacccctgccatctggccagagtcgtgaag
atcggctcactggagtggtactatgagcatgtgaaagcccgcttcaagaggttcggaagt
gccaaggtcatccggtccctccacgggcggctgcagggtggaggccttccttctggagag
acaccttattcgtgcctgtctcttaaagcctcaagtttgattgaagaagcagaagttggc
atagacacctttgagcattcaagctctcgccgggcctgctgcaggcatttcaaggcatct
tag

>gi568815596f:237466574_237667172|GENSCAN_predicted_peptide_2|98_aa
MWELALHTTPLPCLLLCEGSARRQPRTRHLASIRRMYSINHRRIFQSLLRDGDLTVHLLS
SAPECRTPSSVMSTPAYNSTIDWALGSSGFSGSVLSQQ

>gi568815596f:237466574_237667172|GENSCAN_predicted_CDS_2|297_bp
atgtgggagctggccctgcacaccacacctctgccttgcctgctcctctgtgagggctcg
gctcgcagacagcccaggacccggcacctggcgagcattcggcggatgtactcaatcaat
caccgacgcatcttccaaagcctcctgcgagatggagacctcactgtgcacctcctttca
tccgcccccgagtgccgtacaccctcctccgtgatgtccacaccagcttacaattctacc
atcgactgggccttgggaagctctgggttctcaggctctgtcctgagccagcagtga

>gi568815596f:237466574_237667172|GENSCAN_predicted_peptide_3|552_aa
MQVSIAAGPELISEERSGDSDQTDEDGEPGSEAQAQAQPFGSKKKRLLSVHDFDFEGDSD
DSTQPQGHSLHLSSVPEARDSPQEPEWQVLRPQGLAKVTVIDESCSEKAAPHKAEGLEEA
DTGASGCHSHPEEQPTSISPSRHGALAELCPPGGSHRMALGTAAALGSNVIRNEQLPLQY
LADVDTSDEESIRAHVMASHHSKRRGRASSESQIFELNKHISAVECLLTYLENTVVPPLA
KPSSVSGGDGSQRKGPRTALKFPRWHLCAALASHFKVDFMGPGESPRNVGWMSERADKVA
SGTRPFKDFTEIIELSSYNLQGLGAGVRTEADVEEEALRRKLEELTSNVSDQETSSEEEE
AKDEKAEPNRDKSVGPLPQADPEVGTAAHQTNRQEKSPQDPGDPVQYNRTTDEELSELED
RVAVTASEVQQAESEVSDIESRIAALRAAGLTVKPSGKPRRKSNLPIFLPRVAGKLGKRP
EDPNADPSSEAKAMAVPYLLRRKFSNSLKSQGKDDDSFDRKSVYRGSLTQRNPNARKGMA
SHTFAVKFSLIL

>gi568815596f:237466574_237667172|GENSCAN_predicted_CDS_3|1659_bp
atgcaggtatctattgcagctgggcctgaactgatatctgaagagagaagtggagacagc
gaccagacagatgaggatggagaacctggctcagaggcccaggcccaggcccagcccttt
ggcagcaaaaaaaagcgcctcctctccgtccacgacttcgacttcgagggagactcagat
gactccactcagcctcaaggtcactccctgcacctgtcctcagtccctgaggccagggac
agcccacaggaacctgagtggcaggtgctcaggccccaggggttggctaaggtaacagta
attgatgagtcctgctcagagaaggcagcccctcacaaggctgagggcctggaggaggct
gatactggggcctctgggtgccactcccatccggaagagcagccgaccagcatctcacct
tccagacacggcgccctggctgagctctgcccgcctggaggctcccacaggatggccctg
gggactgctgctgcactcgggtcgaatgtcatcaggaatgagcagctgcccctgcagtac
ttggccgatgtggacacctctgatgaggaaagcatccgggctcacgtgatggcctcccac
cattccaagcggagaggccgggcgtcttctgagagtcagatctttgagctgaataagcat
atttcagctgtggaatgcctgctgacctacctggagaacacagttgtgcctcccttggcc
aagccctccagtgtcagtggaggtgatggctcccagaggaagggaccaaggacggcacta
aagttccccaggtggcatctctgcgcggccctcgcctcacacttcaaagtcgacttcatg
gggccaggggagagccctcggaatgtgggatggatgagtgaacgagcagacaaggtggcc
agtggaactagaccctttaaggactttacagagattattgaactgagttcttataacttg
cagggtctaggtgctggagtgcgcacggaggccgatgtagaggaggaggccctgaggagg
aagctggaggagctgaccagcaacgtcagtgaccaggagacctcgtccgaggaggaggaa
gccaaggacgaaaaggcagagcccaacagggacaaatcagttgggcctctcccccaggcg
gacccggaggtgggcacggctgcccatcaaaccaacagacaggaaaaaagcccccaggac
cctggggaccccgtccagtacaacaggaccacagatgaggagctgtcagagctggaggac
agagtggcagtgacggcctcagaagtccagcaggcagagagcgaggtttcagacattgaa
tccaggattgcagccctgagggccgcagggctcacggtgaagccctcgggaaagccccgg
aggaagtcaaacctcccgatatttctccctcgagtggctgggaaacttggcaagagacca
gaggacccaaatgcagacccttcaagtgaggccaaggcaatggctgtgccctatcttctg
agaagaaagttcagtaattccctgaaaagtcaaggtaaagatgatgattcttttgatcgg
aaatcagtgtaccgaggctcgctgacacagagaaaccccaacgcgaggaaaggaatggcc
agccacaccttcgcggtaaagttttctctcattctctga

>gi568815596f:237466574_237667172|GENSCAN_predicted_peptide_4|70_aa
MGRSWLWPSLPFAALGLGLQLANCCNRKTLHSLMGEVTLGIGSHRVAAVEQPRQEQYSVT
RKAVSAVDGF

>gi568815596f:237466574_237667172|GENSCAN_predicted_CDS_4|213_bp
atgggccgcagctggctttggcccagcctgccgtttgctgccctgggtctaggtctccag
ctggcaaactgttgcaacaggaagacactacacagcctgatgggagaggtaaccttggga
attggaagccatcgagttgcagctgtggaacagccacggcaagagcaatattcagtcacc
agaaaagctgtttctgctgtagatggcttctga

>gi568815596f:237466574_237667172|GENSCAN_predicted_peptide_5|87_aa
MKVLRAWLLCLLMLGLALRGAASRTHRHSMEIRTPDINPAWYASRGIRPVGRFGRRRATL
GDVPKPGLRPRLTCFPLEGGAMSSQDG

>gi568815596f:237466574_237667172|GENSCAN_predicted_CDS_5|264_bp
atgaaggtgctgagggcctggctcctgtgcctgctgatgctgggcctggccctgcgggga
gctgcaagtcgtacccatcggcactccatggagatccgcacccctgacatcaatcctgcc
tggtacgccagtcgcgggatcaggcctgtgggccgcttcggtcggaggagggcaaccctg
ggggacgtccccaagcctggcctgcgaccccggctgacctgcttccccctggaaggcggt
gctatgtcgtcccaggatggctga

>gi568815596f:237466574_237667172|GENSCAN_predicted_peptide_6|333_aa
MLSLFLAATWASRASSGRGPLDSSPASGQGGGTTVVAELISQQPRGMRPKREVRGMAQAH
RTPQPRAAPSQPRVFKLVLLGSGSVGKSSLALRYVKNDFKSILPTVGCAFFTKVVDVGAT
SLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEV
LVMLVGNKTDLSQEREVTFQRRAVLENEGSPEEGPRSAKKHNLDTKRGGVRAPRLQLSRI
LLLEVNQVSLGNSLINSAGFCGCFLQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQE
LLQRSDEEGQALRGDAAVALNKGPARQAKCCAH

>gi568815596f:237466574_237667172|GENSCAN_predicted_CDS_6|1002_bp
atgctctccctcttcttggctgccacgtgggcttctcgtgcctcctccgggagaggtcct
ctggattcttcccctgcctctgggcagggcggaggaaccactgtggtggcggagcttatt
tcccagcagccccgcgggatgagacccaaacgagaagttaggggcatggcacaggcacac
aggaccccccagcccagggctgcccccagccagccccgtgtgttcaagctggttctcctg
ggaagtggctccgtgggtaagtccagcttggctcttcggtacgtgaagaacgacttcaag
agtatcctgcctacggtgggctgtgcgttcttcacaaaggtggtggatgtgggtgccacc
tctctgaagcttgagatctgggacacagctggccaggagaagtaccacagcgtctgccac
ctctacttcaggggtgccaacgctgcgcttctggtgtacgacatcaccaggaaggattcc
ttcctcaaggctcagcagtggctgaaggacctggaggaggagctgcacccaggagaagtc
ctggtgatgctggtgggcaacaagacggacctcagccaggagcgggaggtgaccttccag
aggagagctgtgttggaaaatgagggttccccagaagaagggcccaggagtgccaagaaa
cacaacttggacacgaaacgtggaggagtgcgggctccacggctgcagctttctcggatc
ttactgttggaagtgaaccaggtgtccttaggaaactctcttataaacagcgctggattt
tgtggctgtttccttcaggaagggaaggagtttgccgacagccagaagttgctgttcatg
gaaacttcggccaaactgaaccaccaggtgtcggaggtgttcaatacagtggcccaagag
ctactgcagagaagcgacgaggagggccaggctctacggggggatgcagctgtggctctg
aacaaggggcccgcgaggcaggccaaatgctgcgcccactag

>gi568815596f:237466574_237667172|GENSCAN_predicted_peptide_7|380_aa
MRSSWIQVSPKSNDWLPHEKREIWTQKRTQREEAMGRQRQKLGDGPQAKQRPGPPGAPEA
RERPGMNSPSEPPEGATSADTLIQSSGLQDLSQYISVISHTACGKVERTKGLLKTHLTKL
SHQLKKDWTILLPLSLLRSQTCPQNAARWNPRHLLLVEASLGLTWHSTLQIARSPLNRCP
PPWRASLRDYRPAKQSPQSPPSGAPGPSGPACPALGIRSVPVLRATRSMDMGTQGSGRKR
LPNRERLTAEDDALNQIAREDFERHPWLLPSRRQELLAIPSCDHQTCFQTLSNGPWGTRY
PTEDLCVRLLKIQVWLQEKGQGRPSTLVSPVEVGLETQSSFTPQDHPPDEKGDWMLDNRK
DPSGIHIAFCHQFTLDSSNP

>gi568815596f:237466574_237667172|GENSCAN_predicted_CDS_7|1143_bp
atgaggtcatcctggattcaggtgagccctaaatccaatgactggcttcctcatgagaaa
agagagatttggacacagaaacgcacacagagggaagaggccatgggaaggcaaaggcag
aaattgggtgatggtccacaggccaagcagcgcccaggaccaccaggagcaccagaggcc
agagagaggccaggaatgaattcaccctcggagcctccagaaggagccacgtctgctgac
accttgattcagtcttctggcctgcaagacttgagccaatacatttctgttataagccac
acagcttgtggaaaagtagaacggactaaaggtcttttaaaaacacacctcaccaagctc
agccaccaacttaaaaaggactggacaatacttttaccactttcccttctcagaagtcag
acctgtcctcagaatgctgcaagatggaacccccggcatctgctcctagtagaggccagt
ctgggcctgacctggcattccaccctgcagatagcgaggtccccactcaaccggtgccca
ccgccctggcgcgcgtcgctccgcgattaccggcccgccaaacagtccccgcaaagtcca
ccctccggggctcccggtccctcaggtcccgcgtgcccggccctgggcatccgcagcgtc
cccgtgctgcgggcgacgcggtcgatggacatgggcacccagggatcggggcgcaagcgg
ctccccaaccgggagcggctcacggcggaggacgacgcgctcaaccagatcgcgcgggag
gattttgaacggcatccctggcttctgcccagtaggcgccaggagctcctcgctattccc
agctgtgaccaccaaacatgcttccagacattgtcaaatggcccatggggaacaagatac
ccaactgaggatctctgtgtcagattactcaaaatccaggtgtggctgcaggagaaggga
cagggaagaccctcaactttagtctcacctgtggaggtggggctggagacccagtcgtcc
ttcaccccccaggaccaccccccagatgagaagggggactggatgttggacaacagaaag
gatccatctgggatccacattgcattttgtcatcagttcaccttggactcctccaatcca
tga

>gi568815596f:237466574_237667172|GENSCAN_predicted_peptide_8|202_aa
MPAAEHTATPPRPRHLLMDLSPVRESGGATAFMMDKFMMERSAVTTCTYFSLNMGRPLRA
SQCHTTGSTQHHLGAKGTPESGGDAGAAQPNAATGSARACELKLRGYPCKNTGAELAARG
RARAQGCRVHSWLRSTKVIQMELNVETREWSVRIQVKQARQNQAKRLVDSYTASISGLEA
TAVGSCTDYLEYRRNNEWPATG

>gi568815596f:237466574_237667172|GENSCAN_predicted_CDS_8|609_bp
atgccagcagctgaacacactgccacaccgccgaggccccgtcatttgctgatggacctc
agtccagtcagagagagtgggggcgccactgctttcatgatggacaagtttatgatggaa
agatccgccgtcaccacctgcacctacttttcactaaacatgggacgaccactgagggcc
tcccagtgccacacaacaggaagcacacagcaccacctaggagcaaaaggtacgccagaa
tctggtggagacgctggagctgcacagcccaatgcagccacgggcagcgcccgagcctgt
gaactaaagctgagaggctacccgtgcaaaaacacgggtgctgagttggctgctagggga
agggctagggctcagggctgccgggtccacagctggctgagaagcaccaaagtcattcaa
atggaattgaatgtggaaacacgcgagtggagtgtcagaatccaagtaaagcaagcaagg
caaaaccaagcaaaaagactcgtggactcatacactgcctctatttcaggtttggaggcc
actgctgtcggaagctgtactgattatttagaatatcgaagaaacaatgagtggccggcc
acggggtga