GENSCAN 1.0	Date run:  6-Nov-116	Time: 18:05:33

Sequence gi568815596r:208028206_208229685 : 201480 bp : 42.61% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -    108    103    6                               1.05
 1.02 Term -   3338   3112  227  0  2   12   36   226 0.739   5.76
 1.01 Init -   3748   3586  163  1  1   76  -20   206 0.826   8.54
 1.00 Prom -  14114  14075   40                              -6.35

 2.03 PlyA -  15569  15564    6                               1.05
 2.02 Term -  19271  19203   69  2  0   49   42   100 0.434  -1.54
 2.01 Init -  22833  22672  162  0  0   67   71   129 0.366   8.88
 2.00 Prom -  24870  24831   40                              -7.05

 3.02 PlyA -  24980  24975    6                               1.05
 3.01 Sngl -  29540  29199  342  2  0   90   48   401 0.994  32.08
 3.00 Prom -  29970  29931   40                              -7.65

 4.00 Prom +  30245  30284   40                              -3.65
 4.01 Init +  31747  31808   62  0  2   87   67    48 0.568   3.39
 4.02 Intr +  33614  33769  156  2  0  108   73    27 0.009   1.40
 4.03 Intr +  42507  42582   76  0  1   84   47    50 0.000  -0.90
 4.04 Intr +  49260  49392  133  2  1   67   84   120 0.010   8.80
 4.05 Term +  78235  78434  200  2  2   85   52   145 0.430   7.18
 4.06 PlyA +  79600  79605    6                               1.05

 5.05 PlyA -  79981  79976    6                               1.05
 5.04 Term -  80291  80019  273  2  0   75   44   269 0.993  15.69
 5.03 Intr -  84144  84061   84  0  0   13   94   165 0.996   8.70
 5.02 Intr -  84303  84208   96  0  0  113   70   212 0.553  21.19
 5.01 Init -  84417  84409    9  0  0  100  105    10 0.999   3.89
 5.00 Prom -  84481  84442   40                              -3.95

 6.05 PlyA -  84603  84598    6                               1.05
 6.04 Term -  85598  85332  267  2  0   30   36   204 0.051   3.91
 6.03 Intr -  93653  93504  150  2  0   84   -6   349 0.035  24.54
 6.02 Intr -  96149  95907  243  2  0  118   94   482 0.999  48.57
 6.01 Init -  96268  96260    9  1  0  100  105    10 0.989   3.89
 6.00 Prom -  96354  96315   40                              -4.85

 7.06 PlyA -  96614  96609    6                               1.05
 7.05 Term - 100270  99998  273  1  0  -15   38   308 0.881   9.99
 7.04 Intr - 101478 101236  243  0  0   90   89   355 0.976  32.57
 7.03 Intr - 101628 101579   50  1  2   27  105    82 0.046   1.28
 7.02 Intr - 107714 107346  369  0  0   86   36   344 0.061  23.15
 7.01 Init - 109492 109387  106  1  1   54   77    67 0.703   2.64
 7.00 Prom - 110145 110106   40                              -7.55

 8.07 PlyA - 112272 112267    6                               1.05
 8.06 Term - 114708 114433  276  0  0   70   45   173 0.915   5.68
 8.05 Intr - 117811 117569  243  1  0   91  117   349 0.999  34.87
 8.04 Intr - 119456 119231  226  1  1   36   47   140 0.002   1.76
 8.03 Intr - 132871 132666  206  1  2   58   76   171 0.044   9.98
 8.02 Intr - 135241 134999  243  1  0   95   84   436 0.999  40.67
 8.01 Init - 135351 135343    9  0  0  102  105    10 0.989   4.09
 8.00 Prom - 140828 140789   40                              -4.35

 9.07 PlyA - 141655 141650    6                               1.05
 9.06 Term - 144104 143961  144  2  0   45   44   143 0.503   2.53
 9.05 Intr - 152611 152540   72  1  0   89  116    46 0.916   6.18
 9.04 Intr - 153100 153013   88  0  1   65   91    48 0.768   1.85
 9.03 Intr - 154842 154760   83  0  2   93   93    27 0.641   1.22
 9.02 Intr - 161866 161748  119  2  2   65   85   115 0.117   8.16
 9.01 Init - 167805 167715   91  0  1   70   63    56 0.064   1.33
 9.00 Prom - 167901 167862   40                              -4.65

10.00 Prom + 177821 177860   40                              -5.95
10.01 Init + 180029 180249  221  1  2   33   65   283 0.853  18.65
10.02 Term + 180508 180748  241  1  1   67   47   318 0.917  20.11
10.03 PlyA + 180829 180834    6                               1.05

11.06 PlyA - 181780 181775    6                               1.05
11.05 Term - 191001 190715  287  1  2   62   39   182 0.582   5.28
11.04 Intr - 193058 192929  130  2  1   83   54    79 0.891   3.35
11.03 Intr - 193407 193178  230  1  2   59  102    95 0.523   4.67
11.02 Intr - 194428 194339   90  2  0   94   34    85 0.027   2.75
11.01 Intr - 199873 199738  136  1  1   67   45   133 0.027   6.12

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  33238  33667  430  1  1  109   43   117 0.894   3.09
S.002 Init -  44479  44356  124  1  1   71   96    84 0.908   7.88
S.003 Init +  49182  49392  211  2  1   60   84   132 0.856   9.00
S.004 Sngl -  85622  85332  291  2  0   49   36   220 0.864   8.30
S.005 Init - 101587 101579    9  1  0  100  105    10 0.893   3.89
S.006 Term - 107714 107338  377  0  2   86   41   347 0.920  23.72
S.007 Init - 119482 119231  252  1  0   51   47   165 0.859   6.09
S.008 Term - 132871 132599  273  1  0   58   43   201 0.949   7.09
S.009 Sngl + 178254 178439  186  2  0   29   54   250 0.985  10.53


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:208028206_208229685|GENSCAN_predicted_peptide_1|129_aa
MKTILSNQTVDIPENVDITLKGRTVIVKGPRGGLWRDFSHINVELSLLRKKEAPAQKDEL
ILEGNNIQLVSNSAASIQQATTVKNKDIRKILDGTYVSEKGTVQQAEDLRVVQLQKQDAG
RLLRPICDI

>gi568815596r:208028206_208229685|GENSCAN_predicted_CDS_1|390_bp
atgaagaccattctcagcaaccagactgttgacattccagaaaatgtcgacatcactctg
aagggacgcacagttatcgtgaagggccccagaggaggcctgtggagggacttcagtcac
atcaatgtagaactcagccttcttaggaagaaagaggctccggcccagaaagatgaatta
atccttgaaggaaacaacattcagcttgtttcaaattcagctgcttcgattcagcaagcc
acaacagttaaaaacaaggatatcagaaaaattttggatggtacctatgtctctgaaaaa
ggaacagttcagcaggctgaagatctaagagttgtccagctacagaaacaagatgctgga
agactcctaagacctatttgtgatatttaa

>gi568815596r:208028206_208229685|GENSCAN_predicted_peptide_2|76_aa
MEQVQAEEMPDAYKTIRSPETYSLLREQHGGTNPMIQLPPPGPTLDTWRLLQLKAWKSKI
KALADSVSGEGLLASL

>gi568815596r:208028206_208229685|GENSCAN_predicted_CDS_2|231_bp
atggagcaagtgcaagcagaggaaatgccagatgcttataaaaccatcagatctcctgag
acttactcattattacgagaacagcatgggggaaccaatcccatgatccagttacctcca
cctggtcccacccttgacacatggagattattacaactcaaggcttggaagtccaagatc
aaggcactggcagattcggtgtctggtgaaggcctgcttgcttccctttag

>gi568815596r:208028206_208229685|GENSCAN_predicted_peptide_3|113_aa
MLQKFDPNGIKVVYLRCTGGEVSATSALDPKIGPLGLSPKKIGDDIAKAMGDWKGLRITV
KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIINIA

>gi568815596r:208028206_208229685|GENSCAN_predicted_CDS_3|342_bp
atgctgcagaagttcgaccccaacgggatcaaagtcgtatacctgaggtgcactgggggt
gaagtcagtgccacgtctgcgctggaccccaagatcggcccactgggtctgtctccaaaa
aagattggtgatgacattgccaaggcaatgggtgactggaagggcctgagaattacagtg
aaactgaccattcagaacagacaggcccagattgaggtagtgccttctgcctctgccctg
atcatcaaagccctcaaggaaccaccaagagacagaaagaaacagaaaaacattaaacac
agtgggaatatcacttttgatgagatcatcaacattgcttga

>gi568815596r:208028206_208229685|GENSCAN_predicted_peptide_4|208_aa
MVLASAWLLVNPQGAFIHGGRPPHPAIMLYRSTCLFLPELSLSLEWNLLKQGCGLSCNPL
RVQLQEQFFTYGRKLLGSPTEHIRLHPISQKHGHILLLHEETHIVNFCSKNYCKNIPGKP
KEFTDPLKEEFAAANSKTQLKNPLHAQTPVGLAANAFSGNFCTLPLTGGRVERLWEFVSL
SPLASDRRNWCRNTSTQIVGLKEGEVEV

>gi568815596r:208028206_208229685|GENSCAN_predicted_CDS_4|627_bp
atggtgctggcatctgcttggcttctggtgaatcctcagggagcttttattcatggtgga
agacctcctcaccctgcaattatgttgtatcgttcaacttgtttgtttctgcctgaactg
tctctgtctctagaatggaatctcctcaagcagggatgtggtctttcttgtaatccacta
agagttcagctccaagagcaattcttcacatacggaaggaagcttctaggaagtcccact
gaacatatccgtttacatcccattagccagaaacatggccacatcctgctgctacatgag
gagactcacattgtgaacttttgctccaagaactactgcaagaacataccaggaaaacca
aaagaattcacagaccctttgaaagaagagtttgccgctgcaaactccaagacacagctg
aaaaaccctctgcatgctcagacccctgtgggcttggctgcaaatgctttctctggaaac
ttctgcacattacccctcactggggggagagtggaaaggctctgggagtttgtgtccctc
tccccccttgccagtgacagaaggaactggtgtaggaacacaagcacccagatcgttggc
ctcaaggagggagaggttgaagtgtga

>gi568815596r:208028206_208229685|GENSCAN_predicted_peptide_5|153_aa
MGKITLYEDRGFQGRHYECSSDHPNLQPYLSRCNSFLRRGDYADHQQWMGLSDSVRSCRL
IPHASSHRLRIYEREDYRGQMVEITEDCSSLHDRFHLSEIHSFNVLEGSWVLYELPNYQG
RQYLLRPGDCRWCQDWGATDARVGSLRRAVELY

>gi568815596r:208028206_208229685|GENSCAN_predicted_CDS_5|462_bp
atggggaagatcaccctctacgaggaccggggcttccagggccgccactacgaatgcagc
agcgaccaccccaacctgcagccctacttgagccgctgcaactcgttcctgcgccgcggc
gactatgccgaccaccagcagtggatgggcctcagcgactcggtccgctcctgccgcctc
atcccccacgccagctcccacaggctcaggatctatgagcgagaggactacaggggccag
atggtggagatcactgaggactgctcctctcttcacgaccgcttccacctcagtgagatc
cactccttcaacgtgctggagggctcctgggtcctctacgagctgcccaactaccagggg
cggcagtacctgctgaggccgggggactgcaggtggtgtcaggactggggggccacggat
gcgagagtgggctccctaaggagagctgtggagctctactga

>gi568815596r:208028206_208229685|GENSCAN_predicted_peptide_6|222_aa
MGKITLYEDRGFQGRHYECSSDHPNLQPYLSRCNSARVDSGCWMLYEQPNYSGLQYFLRR
GDYADHQQWMGLSDSVRSCRLIPHDRFRFNEIHSLNVLEGSWVLYELSNYRGRQYLLMPG
DYRRYQDWGATNARGTFGNVCRQFCLSRPDSNATGTQMVEARMLLNVLQCTGQPPHPADN
FLGPKCQKSAAVEKPCSKESGTPGGTGSRQKEGRPQSLESEP

>gi568815596r:208028206_208229685|GENSCAN_predicted_CDS_6|669_bp
atggggaagatcaccctctacgaggaccggggcttccagggccgccactatgaatgcagc
agcgaccaccccaacctgcagccctacttgagccgctgcaactcggcgcgcgtggacagc
ggctgctggatgctctatgagcagcccaactactcgggcctccagtacttcctgcgccgc
ggcgactatgccgaccaccagcagtggatgggcctcagcgactcggtccgctcctgccgc
ctcatcccccacgaccgcttccgcttcaatgaaatccactccctcaacgtgctggagggc
tcctgggtcctctacgagctgtccaactaccgaggacggcagtacctgctgatgccaggg
gactataggcgctaccaggactggggggccacgaatgccagaggaacctttggcaatgtc
tgcagacagttctgcttgtcacgaccggacagtaatgctaccggtacccagatggtagag
gccaggatgctgctcaatgtcctgcaatgcacaggacagcctccccacccagcagataat
tttttgggccccaaatgtcaaaagagtgctgcggttgagaaaccttgctctaaagagagt
ggaacaccaggagggacagggtcccggcaaaaggaaggaagaccccagtccctggagtca
gagccttaa

>gi568815596r:208028206_208229685|GENSCAN_predicted_peptide_7|346_aa
MEVQVSSGGAGELAAQDPASALSKAPGRANNCKLHEATGSQCIVLRYTKLTDARTSVRPM
NAREKGTVLYTDFGLEAIILMGQGDMRQALNNLQSIFPGSGFSYSEKYVQGLRRAPPPAH
EGDDPALCECPCQGNLQDSCSPMASGLLTRRCHWQHLPSPITLNSHHPCQPAMGKITFYE
DRAFQGRSYETTTDCPNLQPYFSRCNSIRVESGCWMLYERPNYQGQQYLLRRGEYPDYQQ
WMGLSDSIRSCCLIPQTVSHRLRLYEREDHKGLMMELSEDCPSIQDRFHLSEIRSLHVLE
GCWVLYELPNYRGRQYLLRPQEYRRCQDWGAMDAKAGSLRRVVDLY

>gi568815596r:208028206_208229685|GENSCAN_predicted_CDS_7|1041_bp
atggaggtgcaagtgagtagcggtggtgcaggcgagcttgcagcccaagaccctgcctct
gccctcagcaaggcccctggcagggccaacaactgcaagctgcatgaggccactggatcc
cagtgcatagtcctccgctacacaaagctgaccgatgcccggaccagtgtgaggccaatg
aatgctagagagaagggtacagttctgtacactgactttggcctagaagccatcatcctc
atgggtcagggagacatgagacaggccctgaacaacttgcagtccatcttcccaggatct
ggcttcagttacagcgagaagtatgttcagggtctgcgacgagccccaccccctgctcat
gaaggagatgatccagcactgtgtgaatgcccatgtcaaggaaacctacaagattcctgc
tcacctatggcatctgggctactcaccagaagatgtcattggcaacatcttccaagcccc
atcacactgaactcgcatcatccgtgtcaaccagccatggggaagatcaccttctatgag
gacagggccttccagggccgcagctacgaaaccaccactgactgccccaacctgcagccg
tatttcagccgctgcaactccatccgggtggagagcggctgctggatgctctatgagcgt
cccaactaccaaggtcaacaatacttgctgcggcgaggggagtaccccgactaccagcaa
tggatgggcctcagcgactccatccgctcctgttgtctcatcccccaaacagtctcccac
aggctgcggctgtacgagagggaagaccacaaaggcctcatgatggagctgagtgaagac
tgccccagcatccaggaccgcttccacctcagcgagatccgttccctccacgtgctggag
ggctgctgggtcctctacgagctgcccaactaccgggggcggcaatacctgctgaggccc
caagagtacaggcggtgccaggactggggggccatggatgctaaggcaggctctttgcgg
agagtggtggatttgtattaa

>gi568815596r:208028206_208229685|GENSCAN_predicted_peptide_8|400_aa
MGKITFYEDRDFQGRCYNCISDCPNLRVYFSRCNSIRVDSGCWMLYERPNYQGHQYFLRR
GKYPDYQHWMGLSDSVQSCRIIPHTSSHKLRLYERDDYRGLMSELTDDCACVPELFRLPE
IYSLHVLEGCWVLYEMPNYRGRQYLLRPGDYRRAWKEKDWKIRDKKVWGRGMCREIWDWA
QRAKIVVSHVKAQCRASTIEEALNNQVEKMIWSFDSSQRLPSATLLLAITFYEDRAFQGR
SYECTTDCPNLQPYFSRCNSIRVESGCWMIYERPNYQGHQYFLRRGEYPDYQQWMGLSDS
IRSCCLIPPHSGAYRMKIYDRDELRGQMSELTDDCISVQDRFHLTEIHSLNVLEGSWILY
EMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMDLY

>gi568815596r:208028206_208229685|GENSCAN_predicted_CDS_8|1203_bp
atggggaagatcaccttctacgaggaccgagactttcagggtcgctgctacaattgcatc
agtgactgccccaacctgcgggtctacttcagccgctgcaactccatccgagtagacagc
ggctgctggatgctctatgagcgtcccaattaccagggccaccagtacttcctgcgccga
ggcaagtaccccgactatcagcactggatgggcctcagcgactcggtccaatcctgccgt
ataattcctcataccagctcgcacaagttaaggctgtacgagagagatgactaccgaggc
cttatgtctgagctcactgatgactgcgcctgtgttccagaactgttccgtctccctgag
atctattccctccacgtactggagggctgctgggtcctctatgaaatgcccaactaccgg
gggcggcagtatctgctgaggcctggggactacagaagggcctggaaggagaaagattgg
aagattagggacaagaaggtctggggtagaggaatgtgcagggagatatgggattgggca
caaagggcgaagatagttgtatcccatgtgaaggcccagtgtagggcatccaccattgaa
gaggcactaaacaaccaagtagaaaaaatgatttggtcatttgattccagtcagcgtctg
ccatcagccaccctactgctggcaatcaccttctacgaggacagggccttccagggccgc
agctacgaatgcaccactgactgccccaacctacaaccctatttcagccgctgcaactcc
atcagggtggagagcggctgctggatgatctatgagcgccccaactaccagggccaccag
tacttcctgcggcgtggggagtaccctgactaccagcaatggatgggcctcagcgactcc
atccgctcctgctgcctcatccccccgcactctggcgcttacagaatgaagatctacgac
agagatgaattgaggggacaaatgtcagagctcacagacgactgtatctctgttcaggac
cgcttccacctcactgaaattcactccctcaatgtgctggagggcagctggatcctctat
gagatgcccaactacagggggaggcagtatctgctgaggccgggggagtacaggaggttt
cttgattggggggctccaaatgccaaagttggctctcttagacgagtcatggatttgtac
tga

>gi568815596r:208028206_208229685|GENSCAN_predicted_peptide_9|198_aa
MGNAKRKQHGPSLRAILHVLMVVLVQPVRPPTRKKHVFLMSVSTSLRCADASACLQKQRK
NKSTGTGLRLAHYDLAISVALQWLDPSEDLTWLEWEELKIPLHGRPIYPNRREREAMILS
SYAGILMNSIPIEEVFKIYGADSSADSGTIKGILGNGNQVQEQKAMCASSRSYTSRAPSM
DCGQCVRWTVLNNWTQGF

>gi568815596r:208028206_208229685|GENSCAN_predicted_CDS_9|597_bp
atggggaatgcgaagagaaagcagcatggccccagcctgagggccattctccatgtcctg
atggtggtcctggttcagcctgtgaggccaccaaccaggaaaaagcatgtgttcctgatg
tctgtgagcaccagtctgagatgcgcggatgcttcagcatgcctccagaagcagagaaag
aacaaaagcactggaaccggtctccggttggcacactatgacttggccatcagtgttgct
ttgcaatggctggatccctcagaagacttaacttggctggagtgggaggaactgaaaata
ccactccatggcagacccatatatccaaatcgtagagaacgagaagctatgattttatca
tcttatgctggaatcttaatgaacagtatcccgattgaggaagtctttaaaatttatggg
gctgattcttctgccgattctggtaccatcaagggcattctaggaaatgggaaccaagta
caggaacaaaaggccatgtgtgcaagttcacgttcatatacttcacgtgccccatcaatg
gactgtggacagtgtgtccgttggacagtactcaacaattggactcaaggattctga

>gi568815596r:208028206_208229685|GENSCAN_predicted_peptide_10|153_aa
MEQYITKGKVTIINLKRTREKFLLAARAIENPSEVNVMSSRNTGQGAVLKVAAVMGATLI
AGSFTPRTFTHQIRDPGEIEKEEQATAGKAETQEEFQGEWTAPTPEFAATEPEVADWPEV
AQVPSGPIQQVPTEDWSTQPAAETGLQLPCSGQ

>gi568815596r:208028206_208229685|GENSCAN_predicted_CDS_10|462_bp
atggaacagtacattacaaaaggaaaagtgaccatcatcaatctgaagaggacccgggag
aagtttctgctggcagctcgtgccattgaaaacccctctgaggtcaatgtcatgtcctct
aggaacactggccagggggctgtgctgaaggttgctgctgtcatgggagccactcttatt
gctggtagcttcactcctagaaccttcactcaccagatccgagatcctggagagattgaa
aaagaagagcaggccacagctggaaaagctgagacccaggaggaatttcagggtgaatgg
actgctccaactcctgagttcgctgctactgagcctgaggttgcagactggcctgaagtt
gcgcaggtgccctctgggcctattcagcaggtccccactgaagactggagcactcagcct
gccgctgaaactggtctgcagctcccgtgctcaggccagtga

>gi568815596r:208028206_208229685|GENSCAN_predicted_peptide_11|290_aa
RGVEGEALAGIGAACGAHGPVRVPGGRRLRGPYTWSSRPEPLAEGTAIMIIHQDLISHDE
MFCNIYKIQEMAVPGARLHPGEINSHVAHTKPVWWSLHTNTSEIWCRDSDRGTSLQRSIP
CPPALCSVKKIHLRPQVLRPTSPRNISPILNRRQRRHILSMDPKTPAPVTDWEGSLPLVF
NHCRDSSLIIHPRFRGRDILTKLSAPLTIPGVQLHLIAALLPNPMPPLRLPLIPPYLNPQ
VWDIATPSLATGHMPITIPLKPNHPYPTQRQYPIPQHNLKGLKPVITHLL

>gi568815596r:208028206_208229685|GENSCAN_predicted_CDS_11|873_bp
agaggtgtggagggagaggcgctggcgggaatcggggctgcgtgtggcgctcatgggcca
gtgcgagttccgggtgggcgcaggctccgtgggccctacacttggagcagccggccggag
ccactggccgagggcaccgcaattatgattattcaccaggacctcatcagccacgatgag
atgttctgcaacatttacaagatccaggagatggctgtgcctggagcccgcctgcaccca
ggtgaaataaacagccatgttgctcacacaaagcctgtttggtggtctcttcacaccaac
acaagtgaaatttggtgccgtgactcggatcgggggacctcccttcagagatcaatccct
tgtcctcctgctctttgctccgtgaaaaagatccacctacgacctcaggtcctcagaccc
accagcccaaggaacatctcaccaattttaaatcggagacaaaggagacacattttatcc
atggacccaaaaactccagcgccggtcacggactgggaaggcagccttcccttggtgttt
aatcattgcagggactcctctctgattattcatccacgtttcagaggtcgagatatttta
accaaattatctgctcccctgactattcctggagtacagctgcatctcattgctgccctt
ctccccaacccaatgcctcctttgcgtcttcctctcatacccccctaccttaacccacaa
gtatgggacatcgctactccttccctggcaaccggtcacatgcccattaccatcccatta
aaacctaaccacccttaccccactcaacgccaatatcccatcccacagcacaatttaaaa
ggcttgaagcctgttatcactcacctgctatag