GENSCAN 1.0	Date run:  6-Nov-116	Time: 18:12:18

Sequence gi568815596r:174648127_174864394 : 216268 bp : 42.30% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   5070   5147   78  2  0   25  113   115 0.832   8.81
 1.02 Intr +  11838  12005  168  2  0   37   62   113 0.058   2.82
 1.03 Intr +  20602  20671   70  0  1   96   49    39 0.013  -1.36
 1.04 Intr +  24857  25000  144  0  0   57   45   150 0.215   6.93
 1.05 Term +  29584  29702  119  2  2   44   37   119 0.265   0.12
 1.06 PlyA +  29872  29877    6                               1.05

 2.00 Prom +  32403  32442   40                              -6.15
 2.01 Sngl +  34966  35550  585  0  0   81   54   308 0.929  22.63
 2.02 PlyA +  36242  36247    6                               1.05

 3.00 Prom +  36657  36696   40                              -6.05
 3.01 Init +  41555  41736  182  1  2   82   20   143 0.177   5.60
 3.02 Intr +  48155  48262  108  2  0   66   70    95 0.316   3.98
 3.03 Term +  56242  56395  154  1  1  116   43   102 0.300   4.91
 3.04 PlyA +  57575  57580    6                               1.05

 4.02 PlyA -  60248  60243    6                               1.05
 4.01 Sngl -  61991  61602  390  2  0   59   37   273 0.706  13.28
 4.00 Prom -  67723  67684   40                              -6.85

 5.00 Prom +  68146  68185   40                              -4.15
 5.01 Sngl +  71782  72192  411  0  0   79   48   475 0.997  38.64
 5.02 PlyA +  72225  72230    6                              -0.45

 6.00 Prom +  72474  72513   40                              -5.35
 6.01 Init +  76400  76562  163  1  1   72    8    92 0.039  -0.40
 6.02 Intr +  77927  78010   84  0  0  123   62    55 0.070   5.27
 6.03 Intr +  81595  81814  220  2  1  115   28   198 0.692  12.94
 6.04 Intr +  82128  82270  143  0  2   29   42   145 0.582   3.08
 6.05 Term +  85106  85230  125  0  2   86   49   146 0.954   8.07
 6.06 PlyA +  87476  87481    6                               1.05

 7.03 PlyA -  88772  88767    6                               1.05
 7.02 Term -  89026  88935   92  2  2   51   48    71 0.042  -3.70
 7.01 Init -  96652  96484  169  1  1   64  100   137 0.473  12.25
 7.00 Prom -  98610  98571   40                              -3.35

 8.10 PlyA -  99495  99490    6                               1.05
 8.09 Term - 100129  99998  132  1  0   99   53   167 0.999  11.41
 8.08 Intr - 100693 100454  240  1  0   70   75   197 0.998  13.42
 8.07 Intr - 102043 101820  224  2  2  101  113   207 0.507  21.42
 8.06 Intr - 105614 105377  238  2  1   89   94   280 0.602  24.96
 8.05 Intr - 106288 106093  196  0  1   58   94   240 0.989  20.10
 8.04 Intr - 109549 109440  110  1  2   95   63    69 0.983   3.26
 8.03 Intr - 111249 111205   45  0  0  121   93    56 0.988   7.09
 8.02 Intr - 111553 111362  192  1  0   20   69   249 0.493  14.97
 8.01 Init - 122759 122706   54  2  0   69   86    89 0.374   6.13
 8.00 Prom - 122875 122836   40                              -7.25

 9.06 PlyA - 123111 123106    6                               1.05
 9.05 Term - 123745 123563  183  1  0   28   42   173 0.389   3.26
 9.04 Intr - 124853 124685  169  1  1   84   32   182 0.735  11.23
 9.03 Intr - 128140 127979  162  0  0   61   94    97 0.167   5.77
 9.02 Intr - 134878 134709  170  1  2   65   84    86 0.062   3.72
 9.01 Init - 142480 142298  183  1  0   61   56   129 0.204   5.07
 9.00 Prom - 145061 145022   40                              -5.75

10.08 PlyA - 148731 148726    6                               1.05
10.07 Term - 152228 151990  239  0  2   57   32   188 0.568   5.45
10.06 Intr - 160916 160779  138  0  0   42  100    88 0.919   4.91
10.05 Intr - 163462 163385   78  2  0   50   87   117 0.932   6.40
10.04 Intr - 164356 164183  174  2  0   92   83   153 0.795  14.19
10.03 Intr - 168089 168006   84  0  0   51   85    75 0.531   2.37
10.02 Intr - 168311 168254   58  2  1   90   55    90 0.673   3.44
10.01 Init - 172568 172482   87  2  0   91   56    55 0.667   3.30
10.00 Prom - 173509 173470   40                              -6.25

11.04 PlyA - 173746 173741    6                              -1.75
11.03 Term - 174801 174662  140  1  2   64   49   130 0.915   3.84
11.02 Intr - 176392 176308   85  1  1  161  110    10 0.965   8.97
11.01 Init - 199005 198754  252  0  0   67  116   103 0.600   8.39

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  18677  18502  176  2  2   52   96   185 0.886  14.57


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:174648127_174864394|GENSCAN_predicted_peptide_1|192_aa
MSAPNTYGVNHSMLEYGALDERGSPKCALASHQYLDVDGNLYSTLCAFLGETERSRVELL
PKSLARWFGTRRDVITVFKYLQWISGPNPEACMQQTEGHEQHWVSGLMDIPNQGQCEGGQ
EDISLQASAYGGLKKMQVFTNSSAKTTVCRKRKASNDDQSEDSYSVQQTNEEKGQCGEEE
WQCNSIRKESAV

>gi568815596r:174648127_174864394|GENSCAN_predicted_CDS_1|579_bp
atgtctgcccccaacacctatggtgttaaccactccatgttagaatatggtgctctggat
gaacgtggctcccctaagtgcgcccttgcctctcaccagtacctggatgtggatggtaat
ttatacagtactctttgtgcttttctgggagaaacagagagatccagggtagaactgctc
cccaagagcttggcaaggtggtttggaaccaggagagatgtgataactgtcttcaaatat
ttacagtggatcagtggccctaacccagaagcatgcatgcaacaaacagagggacatgaa
caacactgggtcagtggattgatggacatcccaaaccagggacagtgtgaaggtgggcaa
gaggacatcagccttcaggcatcagcatatgggggcctcaaaaagatgcaagtttttaca
aattccagtgccaaaaccacagtatgccgcaagagaaaagcaagcaatgatgatcaatct
gaagattcttatagcgttcaacaaacaaatgaagagaaggggcagtgtggagaggaggaa
tggcaatgcaacagcatacgaaaggaaagtgcagtttag

>gi568815596r:174648127_174864394|GENSCAN_predicted_peptide_2|194_aa
MVGAGVRSFLSPAPLRGEGTEARGQEFAEGRELEGESSPGPFPPTLESSPPSCGCWRGDR
VGVFPLFEPEGTPFPTLSRLLSKKECPTFRYLKFKLIFKNGFKIGVNPTEGQGPHASDSC
PLCGDNVLLFPRKDAASPHKSVGIESFCCQWGWIYHQPPTSLNTVGSTANMWRKPKLYSI
ALANSCSSGGSDQL

>gi568815596r:174648127_174864394|GENSCAN_predicted_CDS_2|585_bp
atggtcggggctggagtccgcagtttcctcagtcccgctcccctgcgcggcgaggggacc
gaggcaagaggacaggagtttgcagaggggcgggaactggaaggggagtctagcccaggg
cctttccccccaactcttgaatcttctccaccttcttgcggctgctggcggggggatcgg
gtgggggtgttccctctgttcgagccggaaggaacgccttttcccacgctttcccgtctg
ctctcaaaaaaagagtgtccaactttcagatatctgaaattcaaattaatttttaaaaat
ggatttaaaatcggggtgaaccccacagagggccaaggtccacacgcatctgactcctgc
ccactatgtggggacaacgtgctgctcttccctcggaaagatgctgcctctcctcacaag
tcggttggaattgagtcgttttgctgccagtggggatggatttatcatcagccacccact
tccttaaatacggtaggatccacagcaaacatgtggagaaaaccgaagctctactccatt
gccctagctaactcctgctcatcagggggttctgaccagctctga

>gi568815596r:174648127_174864394|GENSCAN_predicted_peptide_3|147_aa
MVTQWNEGKRGKYPDFIPLLPARPSCELTQEPEDRKPTTLSMQISLPGLEQVENGDSGLE
GPGLGHCGPLTALHLGAIVQQEPDCRIHTLAPSPGARKISVEFKYLMPHLLIDPKSYFAG
KKDEEGDIYVESSTSKFVFMAEFGDQL

>gi568815596r:174648127_174864394|GENSCAN_predicted_CDS_3|444_bp
atggtgacccagtggaatgagggaaaaaggggtaaataccctgactttattcctctcctg
ccagctcgcccatcatgtgagctcactcaggagccagaggacaggaaacccacaacgctg
tccatgcagatcagcctccctggcctggaacaggtggagaatggtgacagtggcctggag
ggcccaggcttgggccactgtgggcccctcacagccttacaccttggggccatagttcag
caggagccagactgccgaattcacaccctggctccctcacctggagcaagaaaaatcagc
gttgaatttaaatatcttatgccacatctattaatagaccctaaatcatattttgcagga
aagaaggatgaagagggagatatttatgttgagagttcaacctctaaatttgtcttcatg
gctgaatttggggatcagttataa

>gi568815596r:174648127_174864394|GENSCAN_predicted_peptide_4|129_aa
MTACWQPSLALGASSALGPILAELEEPFSLPLHPGSPSLGWLRPEPAPSACREVWRERHE
WEPGLHPALAGQLEFWAGVGLTGPAVGAASQPRAVRGLAPGPAPAEGALGPPAALAHQRC
ARFRFLAGP

>gi568815596r:174648127_174864394|GENSCAN_predicted_CDS_4|390_bp
atgacagcgtgctggcagccctcgcttgctctcggtgcctcctcggccttggggcccatt
ctggccgagcttgaggagcccttcagcctgccgctgcaccctgggagcccttctctgggc
tggctgaggccagagccggctccctcggcttgcagggaggtgtggagggagaggcacgag
tgggaaccggggctgcaccccgcgcttgcgggccagctggagttctgggcgggcgtgggc
ttgacgggacccgcagttggagcagccagccagccccgggcagtgaggggcttagcacct
gggccagcccctgcggagggtgccctgggtcccccagcagccctggcccaccagcgctgc
gctcgatttcgatttctcgcagggccttag

>gi568815596r:174648127_174864394|GENSCAN_predicted_peptide_5|136_aa
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE
LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI
MPKDIQLARRIRGERA

>gi568815596r:174648127_174864394|GENSCAN_predicted_CDS_5|411_bp
atggctcgtacaaagcagactgcccgcaaatcgaccggtggtaaagcacccaggaagcaa
ctggctacaaaagccgctcgcaagagtgcgccctctactggaggggtgaagaaacctcat
cgttacaggcctggtactgtggcgctccgtgaaattagacgttatcagaagtccactgaa
cttctgattcgcaaacttcccttccagcgtctggtgcgagaaattgctcaggactttaaa
acagatctgcgcttccagagcgcagctatcggtgctttgcaggaggcaagtgaggcctat
ctggttggcctttttgaagacaccaacctgtgtgctatccatgccaaacgtgtaacaatt
atgccaaaagacatccagctagcacgccgcatacgtggagaacgtgcttaa

>gi568815596r:174648127_174864394|GENSCAN_predicted_peptide_6|244_aa
MMSFDSMSHIQVTLMQEVGSHSLGQLHPCGFAGYSPFWLLSWAGVECLWLFQVHAGKTLG
NTFLSLIVLGSEAKRETLDGVTGGVFGGCSPFHSKHAWEATLPKAFGQSSVNTASQVVRP
AGTEPSDPGGESGMDEFVAVAAGGVGRSARFARVGVPPSPELSLTRISYAFKRVWSGEAV
HLPHSSRAGKPGGEGLWRAGAPGTSRENVYYSPDRTQHKHEPSRLFPQVLCLLVEAFLSL
SQTV

>gi568815596r:174648127_174864394|GENSCAN_predicted_CDS_6|735_bp
atgatgtcctttgactccatgtctcacatccaggtcacactgatgcaagaggtgggttcc
catagtcttgggcagctccacccctgtggctttgcagggtacagccccttctggctgctt
tcatgggctggcgttgagtgtctgtggcttttccaggtgcacgctgggaaaacccttgga
aatacattcttgagccttattgtgttgggctcagaggctaagagggagaccctggatgga
gtgacaggtggtgtctttggtggctgttcacccttccacagtaaacatgcttgggaagca
actttgccaaaagccttcggacagtccagcgtcaacaccgcaagccaagtggtaaggccc
gcggggacagaaccgtcggaccctggtggcgaatctgggatggatgaattcgttgctgtt
gcggcgggcggtgttggcaggagcgctagatttgctcgggttggagtccctcccagcccg
gagctgagtctgacgaggatttcttacgcgttcaagcgagtgtggagcggcgaggcagtg
cacttgccccatagctcccgcgctgggaaacccggaggggaggggctgtggagggcggga
gccccgggcacctctcgtgaaaatgtctattactccccagaccgcactcagcacaagcac
gaaccttcccgtttattcccacaagtgctgtgcctgctggtggaagcatttctctccctt
tctcagacagtttag

>gi568815596r:174648127_174864394|GENSCAN_predicted_peptide_7|86_aa
MSPWPHVFGYEVSSLVRVNAVWNIMMMDKASISPQMVVLAEALHAGKANPYTYVYSIVSV
SISPILNIDIHQNPPTSGETAKPIPV

>gi568815596r:174648127_174864394|GENSCAN_predicted_CDS_7|261_bp
atgagcccatggccacatgtctttggctacgaagtgagttccctggtcagagtcaatgct
gtatggaatatcatgatgatggataaggcatctataagtccacagatggtagttttggca
gaagcattgcatgcaggaaaggcaaatccatatacttatgtctattccatagtgtcagtg
tcaatctctcctatcctgaacattgacattcaccaaaatcccccaacatctggggaaaca
gcaaagcccattccagtttga

>gi568815596r:174648127_174864394|GENSCAN_predicted_peptide_8|476_aa
MDRARWLAPVISALWEAKGGEKNLTVLVSSAVSAGLVLGSEHETRLVAKLFKDYSSVVRP
VEDHRQVVEVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIP
SEKIWRPDLVLYNNADGDFAIVKFTKVLLQYTGHITWTPPAIFKSYCEIIVTHFPFDEQN
CSMKLGTWTYDGSVVAINPESDQPDLSNFMESGEWVIKESRGWKHSVTYSCCPDTPYLDI
TYHFVMQRLPLYFIVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLLSLTVFLLVIV
ELIPSTSSAVPLIGKYMLFTMVFVIASIIITVIVINTHHRSPSTHVMPNWVRKVFIDTIP
NIMFFSTMKRPSREKQDKKIFTEDIDISDISGKPGPPPMGFHSPLIKHPEVKSAIEGIKY
IAETMKSDQESNNAAAEWKYVAMVMDHILLGVFMLVCIIGTLAVFAGRLIELNQQG

>gi568815596r:174648127_174864394|GENSCAN_predicted_CDS_8|1431_bp
atggaccgggcgcggtggctcgcgcctgtaatctcggcactttgggaggccaagggtggg
gagaagaatctgacagtgttggtgtcatctgctgtctcagctggcctcgtcctgggctcc
gaacatgagacccgtctggtggcaaagctatttaaagactacagcagcgtggtgcggcca
gtggaagaccaccgccaggtcgtggaggtcaccgtgggcctgcagctgatacagctcatc
aatgtggatgaagtaaatcagatcgtgacaaccaatgtgcgtctgaaacagcaatgggtg
gattacaacctaaaatggaatccagatgactatggcggtgtgaaaaaaattcacattcct
tcagaaaagatctggcgcccagaccttgttctctataacaatgcagatggtgactttgct
attgtcaagttcaccaaagtgctcctgcagtacactggccacatcacgtggacacctcca
gccatctttaaaagctactgtgagatcatcgtcacccactttccctttgatgaacagaac
tgcagcatgaagctgggcacctggacctacgacggctctgtcgtggccatcaacccggaa
agcgaccagccagacctgagcaacttcatggagagcggggagtgggtgatcaaggagtcc
cggggctggaagcactccgtgacctattcctgctgccccgacaccccctacctggacatc
acctaccacttcgtcatgcagcgcctgcccctctacttcatcgtcaacgtcatcatcccc
tgcctgctcttctccttcttaactggcctggtattctacctgcccacagactcaggggag
aagatgactctgagcatctctgtcttactgtctttgactgtgttccttctggtcatcgtg
gagctgatcccctccacgtccagtgctgtgcccttgattggaaaatacatgctgttcacc
atggtgttcgtcattgcctccatcatcatcactgtcatcgtcatcaacacacaccaccgc
tcacccagcacccatgtcatgcccaactgggtgcggaaggtttttatcgacactatccca
aatatcatgtttttctccacaatgaaaagaccatccagagaaaagcaagacaaaaagatt
tttacagaagacattgatatctctgacatttctggaaagccagggcctccacccatgggc
ttccactctcccctgatcaaacaccccgaggtgaaaagtgccatcgagggcatcaagtac
atcgcagagaccatgaagtcagaccaggagtctaacaatgcggcggcagagtggaagtac
gttgcaatggtgatggaccacatactcctcggagtcttcatgcttgtttgcatcatcgga
accctagccgtgtttgcaggtcgactcattgaattaaatcagcaaggatga

>gi568815596r:174648127_174864394|GENSCAN_predicted_peptide_9|288_aa
MRKLASLGLGPPKYQNRGLALISTSPAKLSLGSAGEGDYKDDGLPATPTGKTSDGIPVFS
MNALASVITPPSPPSTQGSGGDQTCCPDPGSCERSLGFGQQYPKLSNFFPMLGRGEALKI
KLYIVHWLNSSIVLAVDHIKTGTGNVDQSQGQKLSHRTRTGPEQDCVTTLGREYEKLAME
EFCHQSISCIDQVVGPQSCRGQGLASVRVDSAWSCSHSPRLLLPGVHWGLLGWLAGVSKT
QALGAQQERHLIRREPLALGHRFNNHLLPPAGHWTKALHAGNRSLAKS

>gi568815596r:174648127_174864394|GENSCAN_predicted_CDS_9|867_bp
atgagaaagctggccagtctggggctggggcccccgaaatatcaaaatcgagggcttgct
ttgatatctacaagccctgcaaagctttccttggggtcagcaggggagggtgactacaag
gatgatggccttccggccactcccacaggaaagacctcagatgggatccccgtgttcagc
atgaatgcattggcctctgtcatcacaccaccttctccgccatcaacacagggatcggga
ggagaccagacatgttgtccagacccaggctcttgtgaaaggtctttgggttttggacag
cagtatccaaagctttccaacttcttccctatgctagggagaggcgaggctctaaagatc
aaactttatattgttcattggttgaactcgtctatagtcctggcagtggaccacataaag
acaggaactggaaatgtggaccaaagtcaagggcagaaactctctcacaggactaggact
ggacctgagcaagactgtgtcaccacactgggcagagaatatgagaagctggccatggaa
gaattctgccatcaaagcatttcctgcattgatcaagtggttggaccccagagctgccgt
ggccaaggcctggcttcggttcgtgttgactctgcgtggtcctgcagccacagtccacgc
ttacttctgccaggggtccactggggcctgctgggctggcttgctggagtttccaaaaca
caggccctgggggcacagcaggagagacacctcatccggagagagcctctagcgctcggc
caccgctttaataaccatttgttgccacctgctggccactggaccaaggcactccatgct
ggaaacaggagtttggctaagagttag

>gi568815596r:174648127_174864394|GENSCAN_predicted_peptide_10|285_aa
MRTTEGAAGTILRMLIITLHGLFKTTQCKVNRDPSATPSQWMLQQQSLVEAATSQPKSMG
RAVSSSLTCSNEAAETDCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKAHTTKR
PMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG
ALKLYFRDLPIPLITYDAYPKFIESAMFKHNEEHMAYTKSFIPVLAFFRVTLHEKENLMN
AENLGIVFGPTLMRSPELDAMAALNDIRYQRLVVELLIKNEDILF

>gi568815596r:174648127_174864394|GENSCAN_predicted_CDS_10|858_bp
atgaggacaactgagggagcagcagggaccatcctgagaatgctaatcattacattacac
gggctattcaaaaccacgcagtgcaaggtaaacagagacccttctgctacaccttctcag
tggatgctgcagcagcagagtctagtagaagcagcaacctctcagcccaagtctatgggg
agagctgtatcttcatccctgacctgcagtaatgaggcagctgagactgattgtggtttg
aatgttcataagcagtgttccaagatggtcccaaatgactgtaagccagacttgaagcat
gtcaaaaaggtgtacagctgtgaccttacgacgctcgtgaaagcacataccactaagcgg
ccaatggtggtagacatgtgcatcagggagattgagtctagaggtcttaattctgaagga
ctataccgagtatcaggatttagtgacctaattgaagatgtcaagatggctttcgacaga
gatggtgagaaggcagatatttctgtgaacatgtatgaagatatcaacattatcactggt
gcacttaaactgtacttcagggatttgccaattccactcattacatatgatgcctaccct
aagtttatagaatctgccatgttcaagcacaatgaagaacatatggcttacacaaagtca
tttattcctgtacttgcatttttcagagtgaccctccacgaaaaggagaatcttatgaat
gcagagaaccttggaatcgtctttggacccacccttatgagatctccagaactagacgcc
atggctgcattgaatgatatacggtatcagagactggtggtggagctgcttatcaaaaac
gaagacattttattttaa

>gi568815596r:174648127_174864394|GENSCAN_predicted_peptide_11|158_aa
MPSKESWSGRKTNRAAVHKSKQEGRQQDLLIAALGMKLGSPKSSVTIWQPLKLFAYSQLT
SLVRRATLKENEQIPKYEKIHNFKVHTFRGPHWCEYCANFMWGLIAQGVKCAGSGIRILH
VWTWSCAKVFVRERLSSESKLRVNEESLAVAGGYPELG

>gi568815596r:174648127_174864394|GENSCAN_predicted_CDS_11|477_bp
atgccatccaaagagtcttggtcagggaggaaaactaatagggctgcagttcacaaatca
aaacaagagggccgtcagcaagatttattgatagcagccttgggaatgaaactgggttct
ccaaagtcgtctgtgacaatctggcaacctctgaaactctttgcttattcgcagttgaca
tcacttgttagaagagcaactctgaaagaaaacgagcaaattccaaaatatgaaaagatt
cacaatttcaaggtgcatacattcagagggccacactggtgtgaatactgtgccaacttt
atgtggggtctcattgctcagggagtgaaatgtgcaggaagtgggataagaatcctacac
gtgtggacttggagctgtgcaaaggtgttcgtcagggagcgcctcagctcagagtcgaag
ctcagagtgaatgaggaaagccttgctgtggctggtggttatccagagttgggatga