GENSCAN 1.0	Date run:  6-Nov-116	Time: 18:16:03

Sequence gi568815596f:130629152_130830192 : 201041 bp : 45.44% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1252   1263   12  0  0   85   83    28 0.544   1.24
 1.02 Intr +   3339   3505  167  2  2   56  115   169 0.870  15.16
 1.03 Intr +   9468   9538   71  0  2   61  110    69 0.978   5.23
 1.04 Intr +  11512  11603   92  2  2   73   94   -21 0.381  -3.29
 1.05 Intr +  16978  17159  182  0  2   85  115   169 0.751  17.97
 1.06 Intr +  25267  25312   46  1  1   59   81    41 0.614  -1.09
 1.07 Intr +  25729  25890  162  0  0   78   53   102 0.912   5.87
 1.08 Term +  27398  28726 1329  1  0   51   43  2053 0.920 188.66
 1.09 PlyA +  29377  29382    6                               1.05

 2.00 Prom +  30058  30097   40                              -3.46
 2.01 Init +  37319  37395   77  1  2   81   49    59 0.150   1.86
 2.02 Intr +  43665  43794  130  0  1   81   92   115 0.987  11.90
 2.03 Intr +  44054  44164  111  1  0   33   92    84 0.229   3.88
 2.04 Term +  52183  52404  222  0  0    2   31   224 0.034   5.02
 2.05 PlyA +  54714  54719    6                               1.05

 3.00 Prom +  55198  55237   40                              -3.06
 3.01 Init +  61085  61172   88  1  1   81  107    56 0.845   7.62
 3.02 Intr +  73103  73277  175  0  1  128   94   137 0.845  17.30
 3.03 Term +  95433  95733  301  0  1   39   38   334 0.821  18.19
 3.04 PlyA +  96010  96015    6                               1.05

 4.00 Prom +  99621  99660   40                              -7.06
 4.01 Sngl + 100001 101044 1044  1  0   94   40  1001 0.993  91.05
 4.02 PlyA + 101568 101573    6                               1.05

 5.00 Prom + 113121 113160   40                              -2.66
 5.01 Init + 119653 119729   77  0  2   43   91    58 0.018   2.16
 5.02 Intr + 132903 135503 2601  0  0  119   -3  2079 0.008 189.26
 5.03 Intr + 137899 138046  148  1  1   88   61    51 0.006   2.64
 5.04 Intr + 147642 147755  114  2  0   52   70   114 0.089   6.64
 5.05 Intr + 168689 168870  182  1  2   13   53   107 0.063  -1.63
 5.06 Intr + 171305 171412  108  2  0   84   98    19 0.336   1.90
 5.07 Term + 178849 178960  112  1  1   56   48   116 0.214   2.43
 5.08 PlyA + 180081 180086    6                               1.05

 6.05 PlyA - 180258 180253    6                               1.05
 6.04 Term - 181477 181407   71  2  2   82   42    73 0.445   0.20
 6.03 Intr - 186383 186311   73  2  1   64   80    41 0.097  -0.12
 6.02 Intr - 193996 193814  183  1  0  113   96    65 0.730   9.78
 6.01 Init - 194860 194810   51  1  0   77   93    64 0.756   4.96

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init +  95047  95120   74  0  2   96   48    58 0.893   3.14
S.002 Intr - 127340 127148  193  0  1   78   61   125 0.867   7.35
S.003 Intr - 129552 129456   97  0  1  112   89    30 0.935   5.08
S.004 Sngl + 132922 135507 2586  0  0  104   48  2024 0.960 192.83


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:130629152_130830192|GENSCAN_predicted_peptide_1|686_aa
MMKKVEEEMKKHESNNVGLLENLSNGVTAGNGDDGLIPQRKSRTPENQQFPDNESEEYHR
ICELVSDYKEKQMPKYSSENSNPGRKLRSMQGASCNISLAGSYHMLIPKPGTGKLENFMA
IEEMKKHGSTHVGFPENLTNGATAGNGDDGLIPPRKSRTPESQQFPDTENEEYHRSAVAL
DCPECDLNPVGQLQYFMKIKISSSDEQNDTQKQFCEEQNTGILHDEILIHEEKQIEVVEK
MNSELSLSCKKERDFLHENSMLREEIAMLRLELDTMKHQSQLRKKKYLEDIESVKKKNDN
LLKALQLNELTMDDDTAVLVIDNGSGMCKAGFAGDDAPRAVFPSIVGCPRQQGMMGGMHQ
KESYVGKEAQSKRGILTLKYPMEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAP
LNPKANREKMTQIMFETFNTPAMYVAIQAMLSLYTSGRTTGIVMDSGDGVTHTVPIYDGN
ALPHATLRLDLAGRELTDYLMKILTERGYRFTTMAEREIVRDIKEKLCYVALDFEQEMAM
VASSSSLEKSYELPDGQVITISNEWFRCPEALFQPCFLGMESCGIHETTFNSIMKSDVDI
RKDLYTNTVLSGGTTMYPGMAHRMQKEIAALAPSMMKIRIIAPPKRKYSVWVGGSILASL
STFQQMWISKQEYDESGPSIVHRKCF

>gi568815596f:130629152_130830192|GENSCAN_predicted_CDS_1|2061_bp
atgatgaagaaggttgaagaagaaatgaagaagcatgaaagtaataatgtgggattacta
gaaaacctgagtaatggtgtcactgctggcaatggtgatgatggattaattcctcaaagg
aagagcagaacacctgaaaatcagcaatttcctgacaacgaaagtgaagagtatcacaga
atttgcgaattagtttctgactacaaagaaaaacagatgccaaaatactcttctgaaaac
agcaacccagggaggaaacttagaagcatgcaaggggcttcctgtaacatttcattggct
gggtcataccacatgctcattcccaaaccaggcactgggaagctagaaaattttatggct
atcgaagaaatgaagaagcacggaagtactcacgtcggattcccagaaaacctgactaat
ggtgccactgctggcaatggtgatgatggattaattcctccaaggaagagcagaacacct
gaaagccagcaatttcctgacactgagaatgaagagtatcacagatcagcggtggcatta
gattgtcctgagtgtgacctgaaccctgttggacagctccagtatttcatgaaaattaaa
atttcttctagtgacgaacaaaatgatactcagaagcaattttgtgaagaacagaacact
ggaatattacacgatgagattctgattcatgaagaaaagcagatagaagtggttgaaaaa
atgaattctgagctttctcttagttgtaagaaagaaagagacttcttgcatgaaaatagt
atgttgcgggaagaaattgccatgctaagactggagctagacacaatgaaacatcagagc
cagctaagaaaaaagaaatatttggaggatattgaaagtgtgaaaaaaaagaatgataat
cttttaaaggctctacaattgaatgagctcaccatggatgatgataccgctgtgctcgtc
attgacaacggctctggcatgtgcaaggccggctttgcgggcgacgatgccccccgggct
gtcttcccttccatcgtggggtgccccaggcagcagggcatgatggggggcatgcatcag
aaagagtcctatgtgggcaaggaggcccagagcaagagaggcatcctgaccctgaagtac
cccatggaacacggcatcatcaccaactgggatgacatggagaagatctggcaccacacc
ttctacaacgagctgcgtgtggcccccgaggagcaccccatcctgctgaccgaggccccc
ctgaaccccaaggccaaccgcgagaagatgacccagatcatgtttgagaccttcaacacc
ccagccatgtacgtggccatccaggccatgctgtccctgtacacctctggccgtactact
ggcatcgtgatggactctggtgacggggtcacccacactgtgcccatctatgatgggaat
gccctcccccatgccaccctgcgcctagacctggctgggcgggaactgactgactacctc
atgaagatcctcaccgagcgtggctataggttcaccaccatggccgagcgggaaatcgtg
cgtgacatcaaagagaagctgtgctatgttgccctggacttcgagcaggagatggccatg
gtggcctccagctcctccctagagaagagctacgagctgcccgatggccaggtcatcacc
atcagcaacgagtggttccgctgccccgaggcgctcttccagccttgcttcctgggcatg
gaatcctgtggcatccatgaaactaccttcaactccatcatgaagtctgatgtggacatc
cgcaaagacctgtacaccaacacagtgctgtctggcggcaccaccatgtaccctggcatg
gcccacagaatgcagaaggagatcgctgccctggcgcctagcatgatgaagatcaggatc
attgctcctcccaagcgcaagtactccgtgtgggtcggtggctccatcctggcctcgctg
tccaccttccagcagatgtggatcagcaagcaggagtatgatgagtcaggcccctccatt
gtccaccgcaaatgcttctag

>gi568815596f:130629152_130830192|GENSCAN_predicted_peptide_2|179_aa
MHKPQCNNSATNGAIERKRAAGSGAGPWGLAEKNGFLGQLHGPAAVCILRTLLPASLQPQ
LQPWLNDAQIHRPTNILHPQCGKATGIQNSPVHERQLWVLNAAKPQICLCWDFLYYPFLR
GNASAGPVTWCTTSDTIILQQHRTLTSQGVDDFLKAKATFKASDFIDALVLSKVASPGS

>gi568815596f:130629152_130830192|GENSCAN_predicted_CDS_2|540_bp
atgcacaagcctcagtgcaacaacagtgctacaaatggagccatagagaggaaacgagca
gcaggctcaggagcagggccctggggcctagcagagaagaatggcttcctgggccagctc
catggccctgctgctgtgtgcatcctcaggacactgctgcctgcatccctgcagccccag
ctccagccatggctgaatgatgcacagattcatagacccaccaacatcttgcaccctcag
tgtggaaaagctacaggcattcaaaacagccctgtccatgagaggcagctgtgggtgctg
aacgctgcgaagccacagatctgcctgtgctgggacttcctgtactacccattcctgagg
ggcaatgcttctgcagggcctgtgacttggtgcacaacttcagacaccatcatcttgcag
cagcaccgcaccctcactagccagggtgttgatgacttcctcaaggccaaggccacattc
aaggcttcggacttcattgatgcgcttgtgctgagcaaggtggcttctccgggatcttaa

>gi568815596f:130629152_130830192|GENSCAN_predicted_peptide_3|187_aa
MVVQQESRNLTIAILRPCIVRSNVAPAFPGFQVLATFEIPIPFARALRRPYADFTTSNFT
TQYWNAISQQAPAIICDFYLWLIGRKPSDDGVDDSDGDDDNDGGDGADDSDDGVDDNDGN
EVLMIVMMMMMLTVMMVLMIVMMIIVMDGADEDSDDNDGGNNKSGGDDMAATVWTCFLKF
MYWKLNP

>gi568815596f:130629152_130830192|GENSCAN_predicted_CDS_3|564_bp
atggtggtgcagcaggagagcaggaacctaaccattgccatcctaaggccctgcattgtg
cggagcaacgtggcaccagcttttcctggattccaggtcttggcaacctttgaaattcca
attccatttgcaagagctttgaggaggccatatgctgatttcaccacaagcaacttcaca
acccagtactggaatgccatcagccagcaggcccctgccattatctgtgacttctatctg
tggctcattggaaggaaacccagtgatgatggagttgatgatagtgatggtgatgatgat
aatgatggtggtgatggtgctgatgatagtgatgatggtgttgatgataatgatggtaat
gaagtgctaatgatagtgatgatgatgatgatgttgacagtgatgatggtgctgatgata
gtgatgatgataatagtgatggatggtgctgatgaagatagtgatgataatgatggtggt
aataacaaaagtggtggtgatgatatggctgctacggtttggacgtgtttcttaaagttc
atgtattggaaacttaatccctaa

>gi568815596f:130629152_130830192|GENSCAN_predicted_peptide_4|347_aa
MGDELAPCPVGTTAWPALIQLISKTPCMPQAASNTSLGLGDLRVPSSMLYWLFLPSSLLA
AATLAVSPLLLVTILRNQRLRQEPHYLLPANILLSDLAYILLHMLISSSSLGGWELGRMA
CGILTDAVFAACTSTILSFTAIVLHTYLAVIHPLRYLSFMSHGAAWKAVALIWLVACCFP
TFLIWLSKWQDAQLEEQGASYILPPSMGTQPGCGLLVIVTYTSILCVLFLCTALIANCFW
RIYAEAKTSGIWGQGYSRARGTLLIHSVLITLYVSTGVVFSLDMVLTRYHHIDSGTHTWL
LAANSEVLMMLPRAMLTYLYLLRYRQLLGMVRGHLPSRRHQAIFTIS

>gi568815596f:130629152_130830192|GENSCAN_predicted_CDS_4|1044_bp
atgggggatgagctggcaccttgccctgtgggcactacagcttggccggccctgatccag
ctcatcagcaagacaccctgcatgccccaagcagccagcaacacttccttgggcctgggg
gacctcagggtgcccagctccatgctgtactggcttttccttccctcaagcctgctggct
gcagccacactggctgtcagccccctgctgctggtgaccatcctgcggaaccaacggctg
cgacaggagccccactacctgctcccggctaacatcctgctctcagacctggcctacatt
ctcctccacatgctcatctcctccagcagcctgggtggctgggagctgggccgcatggcc
tgtggcattctcactgatgctgtcttcgccgcctgcaccagcaccatcctgtccttcacc
gccattgtgctgcacacctacctggcagtcatccatccactgcgctacctctccttcatg
tcccatggggctgcctggaaggcagtggccctcatctggctggtggcctgctgcttcccc
acattccttatttggctcagcaagtggcaggatgcccagctggaggagcaaggagcttca
tacatcctaccaccaagcatgggcacccagccgggatgtggcctcctggtcattgttacc
tacacctccattctgtgcgttctgttcctctgcacagctctcattgccaactgtttctgg
aggatctatgcagaggccaagacttcaggcatctgggggcagggctattcccgggccagg
ggcaccctgctgatccactcagtgctgatcacattgtacgtgagcacaggggtggtgttc
tccctggacatggtgctgaccaggtaccaccacattgactctgggactcacacatggctc
ctggcagctaacagtgaggtactcatgatgcttccccgtgccatgctcacatacctgtac
ctgctccgctaccggcagctgttgggcatggtccggggccacctcccatccaggaggcac
caggccatctttaccatttcctag

>gi568815596f:130629152_130830192|GENSCAN_predicted_peptide_5|1113_aa
MLPGKLEATERKDQPFTKDQQITDDSSWGTGSMELKRGKTFIKSSLQVSHEKPPDPAAVA
AAREGTGPWSVLPGGQQRPHSEKGPQASPSAQEYDRCPNKGAQLDPKGGPAALCGATFKP
VRKCKTHDSMSGAGRATAATGQLVGSASFPGSPGSRRMIDYRHFVPQMPFVPAVAKSIPR
KRISLKRPKKCFRNLFHIRRNKTEDLASLAAEGKSLPSPGDPSDPGGRRSKAFLPPGEGP
GLDGLCQDLLDSELLADASFGLCRALCEDVASLQSFDSLTGCGEVFADESSVPSLELNEG
PESPTQAAQGLESKVPRGPLQGSVEQLASPAQNEASDFTRFWDSVNRSVRQQQRALLGPW
LSGPQGTDRDQSRLDTAGLAELPLCPCRDPRSGSKASSIDTGTPKSEQPESVSTSDEGYY
DSFSPGLEEDKKEAESPGTPAATFPRDSYSGDALYELFHDPSEGPLGPSPDDDLCVSESL
SGPALGTPLSICSFRVGAEENLAPAPGPDLLSQGFLQSSWKGKECLLKLCDTELAITMGI
VSWLRRGPTPRAPPTPGQPAAPPGSQGAPRAPTEKLGGREGLASDAGGATVCSAPSRQEL
WAHPGTTGLLAGESKALGGATQGTGTLSRDASREEETRGHSEGLFSSMESAATSTTDTSG
KNKAPVPSTWPCSQKEPGPPGVLGCFRGPWRPGHGGDTLDAEPMLAGCVARVAALKISSN
EQPPAAWPPRQDMGSGLFGQRWARGPDMLEQKQSSSSPSMTTIHGLPYSASTQDQRCRDR
VQDLSWLRVEPTGLGVQAWASVEDQPLQLSTEAVEQVAHGSQLDSEPRSAPAARWSSQGH
HPESLGLTLNSQQEGGVSASAPECRCSLLAREGLLCGQPEVGASGPAMAEPHLKTSNGAV
DLTPQNVTTHVQHPDIQNHEGRRWLVSVGGTGVRPGPVSGQQTPTEHSITWGEETPVEYL
KNPENYILGTKTVFTGINKKSEIRFPRGWEDQARAQDWLRTTGPAVGSPGTRHGSLLPAK
ATQGAFIPQAEAAERLGSGRQPYSGNHSHSIGKLNAMTATDLRVGGAKRGTQPPKTSAYA
ATVLRMDRELHLKLNSNYCKKSKALVETECDGA

>gi568815596f:130629152_130830192|GENSCAN_predicted_CDS_5|3342_bp
atgttaccagggaagttggaagcaacagaaagaaaagatcaaccatttacaaaagatcag
caaataaccgatgacagcagctggggcactggcagcatggagctgaagagaggaaagacc
ttcatcaagtccagcctgcaggtttcccacgagaaacccccagacccagcagccgtggct
gcagccagggaggggacaggcccctggtcagtccttccaggagggcaacagaggccccac
agtgagaagggcccccaagccagccccagtgcccaagaatacgacagatgccccaacaaa
ggggcgcagctggaccccaaagggggacccgcagccctctgtggagccaccttcaaaccg
gtgcgaaagtgcaagactcacgacagcatgtctggggcaggcagggccacggctgccaca
gggcagctggtgggcagtgcaagcttcccgggctccccgggcagccggcgcatgatcgac
taccgccactttgtgccccagatgccctttgtgccagctgtggccaagagcatcccgagg
aagaggatttccctgaagaggcccaagaagtgctttcggaacctattccacattcggaga
aacaagactgaggacttggcctcgctggcggccgaggggaaaagcctgccctccccaggg
gacccgtcagaccctggggggcggcgaagcaaagccttcctccccccgggtgaggggccg
gggctggacggcctgtgccaggacctgttggacagcgagctcctggccgatgcatccttt
ggtctctgcagggccctgtgtgaggacgtggcctcactccagagcttcgactcgctcacg
ggttgtggggaggtgttcgcagatgagagctcggtgccatctctggagctgaacgagggc
ccggagagcccaacccaggctgctcagggcctggagagcaaggttcccaggggccctctc
cagggcagtgtggagcagctggcctcgcccgcccagaatgaagcctctgacttcaccagg
ttctgggacagtgtgaatcgctcagtgcgtcagcagcagcgtgccctcctaggcccgtgg
ctttcaggcccccaggggacagacagggaccaatcccggctggacacagctgggctcgct
gagctgcccctctgcccctgcagggaccctcgcagcggctccaaagccagctccatcgac
acaggcacccccaagagcgagcagcccgaatccgtgtccacaagtgacgagggctactat
gattccttctcgccaggacttgaggaggacaagaaggaagctgagagcccaggcactcct
gccgccaccttcccacgggacagctacagtggggacgccctctacgagctcttccacgac
cccagcgagggtcctcttggccccagcccagatgatgacctgtgcgtgtctgagagtctg
tcagggccggccctggggacgccactgtccatatgcagcttccgagtgggggccgaggag
aacttggccccagcaccaggccctgacctgctcagccagggcttcctacagagctcctgg
aagggcaaggagtgcctgctgaagctgtgtgacactgagctcgccatcaccatgggcatc
gtcagctggctgcgccgaggccccacgccccgtgccccacccacccctgggcagcctgca
gctccacctggttcccagggagcccctagggcacccacagagaagctggggggcagggag
ggcctggcctcagatgcagggggggcgacagtttgctcagcacccagcaggcaggagctg
tgggcacacccgggcaccacaggcctgctcgccggagagagcaaggccctcggaggggcc
acacaagggactggcacactgtccagggatgcctctcgagaggaagagacacgaggtcac
tctgaaggcttgttctcctctatggagtctgcagccacttcgacaacagatacttccggt
aaaaataaggccccagttccttctacctggccctgctcccagaaggagcctgggccacca
ggggtcctggggtgtttccgaggcccctggaggccaggtcacggaggtgacactctggat
gcagagcccatgctggcaggctgtgtggcccgtgtggcagccctgaagatcagctcaaac
gaacagcccccggccgcatggcctccaaggcaagacatgggcagtgggctctttgggcag
cgctgggccaggggccctgacatgctggagcagaaacagtccagcagctcccccagcatg
accaccatccatggcctaccctactcagccagcacacaggaccagaggtgtcgagatcgt
gtccaggacctgagctggctcagggtggagcccaccgggctaggtgtccaggcctgggcc
tctgtggaggaccagcccttgcagctcagcacagaggctgtggagcaggtggcacacggc
agccagctggactctgagccccgctcagcccctgctgcccggtggagttcccagggccac
catccagaaagcctgggcctcactttgaacagccagcaggaagggggggtctctgcaagt
gccccagaatgccgctgcagcctcctggcccgtgagggcctcctctgtggccagccagaa
gtgggggcctctgggccagccatggctgagccccatctgaaaacttcgaatggggctgtg
gacctcactccccaaaatgtcacaacacatgtgcagcaccccgacattcagaaccatgaa
gggagaaggtggctggtgtctgtaggagggacaggtgtccgtcctgggccagtgtcaggc
cagcagacgccaacagaacacagcatcacctggggagaggagacaccggtggagtatttg
aagaatccagagaattacatccttggaacaaaaacagtcttcactggcattaacaagaag
agcgagatccgctttcctagaggctgggaggaccaggcccgggcacaggactggcttcgc
accactggccccgcagtcgggtccccggggacgcgccacgggtcactgctgcctgctaaa
gcgacacaaggcgccttcattcctcaggccgaggcggccgaacgccttggctctggccga
caaccttacagtgggaaccacagtcactcaattggaaaattaaatgcaatgacagcaact
gatctcagggtgggaggagccaagaggggaactcaaccacctaagacaagcgcatatgcg
gccactgtcttacgcatggaccgagagctgcatttaaaactcaactcaaactattgcaag
aaaagtaaggctttggtggaaactgaatgtgatggtgcctga

>gi568815596f:130629152_130830192|GENSCAN_predicted_peptide_6|125_aa
MLGRRGLQGQGQPVVVTVQQCLTGQTPKNTVQPGGHIFISLDRQVGQAHPELRPEGAGGR
RKLPWGGAEAAPQSNTAQQAQPISTHQALGIGSPARWTPPNSEHCLGGSRVATAGDKGGE
LLAAQ

>gi568815596f:130629152_130830192|GENSCAN_predicted_CDS_6|378_bp
atgctgggcaggcggggactgcagggccagggccagcctgtggttgtgactgtccagcag
tgcctcacggggcagacacccaagaacaccgtccagccgggaggacacatcttcatctcc
ttggataggcaggtgggccaggcccaccctgagctgaggcctgaaggtgccggaggaaga
agaaagctgccctggggtggagcggaggctgctcctcagagcaacacagcccagcaggct
cagcccatctccacacaccaggccctgggcataggctccccagcccgctggacaccaccc
aactcagagcactgcctcgggggctcccgtgtggcaacagcgggggacaaaggtggggag
ctcctggcggcgcagtga