GENSCAN 1.0	Date run:  8-Nov-116	Time: 04:14:56

Sequence gi568815596r:47420910_47670245 : 249336 bp : 45.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   8833   9032  200  1  2   26   87   154 0.737   8.09
 1.02 Intr +  24639  24748  110  1  2   88   85    67 0.674   6.40
 1.03 Intr +  30997  31017   21  0  0  137   72    13 0.480   2.34
 1.04 Intr +  42122  42245  124  1  1   98   91    64 0.922   7.86
 1.05 Intr +  45749  45899  151  0  1   34   41   147 0.995   3.82
 1.06 Intr +  50056  50153   98  1  2   75   97    76 0.976   6.85
 1.07 Intr +  54116  54361  246  0  0   75   58   175 0.981  10.63
 1.08 Intr +  55458  55662  205  1  1   77  111    70 0.981   6.46
 1.09 Intr +  57363  57610  248  0  2   52   95    82 0.958   2.40
 1.10 Intr +  59787  59962  176  1  2  104   68    75 0.952   6.76
 1.11 Term +  61870  62040  171  0  0   56   48   107 0.908   1.33
 1.12 PlyA +  62291  62296    6                               1.05

 2.00 Prom +  62777  62816   40                              -3.86
 2.01 Init +  63583  63667   85  0  1   76  115    43 0.432   6.78
 2.02 Term +  72035  72213  179  0  2   55   49   149 0.511   5.55
 2.03 PlyA +  72789  72794    6                               1.05

 3.00 Prom +  79684  79723   40                              -4.26
 3.01 Init +  89315  89414  100  1  1  104   50    56 0.548   4.06
 3.02 Intr +  91394  91511  118  0  1  130   77    35 0.985   6.12
 3.03 Intr +  96887  96940   54  2  0   78   77    43 0.529   0.29
 3.04 Intr +  98801  98976  176  2  2   97   36   137 0.954   8.98
 3.05 Term +  99282  99352   71  1  2  123   54    29 0.962   1.10
 3.06 PlyA +  99869  99874    6                              -0.45

 4.11 PlyA -  99896  99891    6                               1.05
 4.10 Term - 100899  99998  902  1  2  119   41  2185 0.526 209.41
 4.09 Intr - 122680 122609   72  2  0   86   44    64 0.002   1.18
 4.08 Intr - 142545 142521   25  0  1   85  100    43 0.412   2.80
 4.07 Intr - 148843 148764   80  2  2  103   33    65 0.265   1.77
 4.06 Intr - 149747 149032  716  1  2  -12   71   960 0.420  75.38
 4.05 Intr - 158820 158702  119  0  2   74   82    48 0.373   2.06
 4.04 Intr - 165996 165712  285  0  0   74   65   153 0.904   9.14
 4.03 Intr - 167991 167940   52  2  1   32  110    32 0.480  -1.29
 4.02 Intr - 168835 168700  136  2  1  106   80    46 0.642   5.23
 4.01 Init - 178298 178250   49  2  1  100   81    39 0.085   5.55
 4.00 Prom - 181861 181822   40                              -5.86

 5.00 Prom + 193794 193833   40                              -1.36
 5.01 Init + 206308 206396   89  0  2   87   94    71 0.355   7.71
 5.02 Term + 230610 230658   49  0  1  113   48    42 0.049  -0.52
 5.03 PlyA + 231396 231401    6                               1.05

 6.04 PlyA - 231513 231508    6                               1.05
 6.03 Term - 238600 238404  197  2  2   97   44   103 0.933   4.37
 6.02 Intr - 239271 239122  150  1  0   45   65   126 0.973   6.13
 6.01 Intr - 239622 239522  101  2  2   66   75    93 0.972   5.55

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:47420910_47670245|GENSCAN_predicted_peptide_1|583_aa
XLNLVEAFVEDAELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVI
QALEKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQVNSVNILVENHEFLVK
PSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEK
VLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEP
MQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQGRIILKASRHACVEVQDEIAFI
PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILAR
VGAGDSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIA
TKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLTMLYQVKKGVCDQSFGIHVA
ELANFPKHVIECAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQGEKIIQEFLSKV
KQMPFTEMSEENITIKLKQLKAEVIAKNNSFVNEIISRIKVTT

>gi568815596r:47420910_47670245|GENSCAN_predicted_CDS_1|1752_bp
nnattgaatttagtggaagcttttgtagaagatgcagaattgaggcagactttacaagaa
gatttacttcgtcgattcccagatcttaaccgacttgccaagaagtttcaaagacaagca
gcaaacttacaagattgttaccgactctatcagggtataaatcaactacctaatgttata
caggctctggaaaaacatgaaggaaaacaccagaaattattgttggcagtttttgtgact
cctcttactgatcttcgttctgacttctccaagtttcaggaaatgatagaaacaacttta
gatatggatcaggtaaacagtgttaacatcctggtggaaaaccatgaattccttgtaaaa
ccttcatttgatcctaatctcagtgaattaagagaaataatgaatgacttggaaaagaag
atgcagtcaacattaataagtgcagccagagatcttggcttggaccctggcaaacagatt
aaactggattccagtgcacagtttggatattactttcgtgtaacctgtaaggaagaaaaa
gtccttcgtaacaataaaaactttagtactgtagatatccagaagaatggtgttaaattt
accaacagcaaattgacttctttaaatgaagagtataccaaaaataaaacagaatatgaa
gaagcccaggatgccattgttaaagaaattgtcaatatttcttcaggctatgtagaacca
atgcagacactcaatgatgtgttagctcagctagatgctgttgtcagctttgctcacgtg
tcaaatggagcacctgttccatatgtacgaccagccattttggagaaaggacaaggaaga
attatattaaaagcatccaggcatgcttgtgttgaagttcaagatgaaattgcatttatt
cctaatgacgtatactttgaaaaagataaacagatgttccacatcattactggccccaat
atgggaggtaaatcaacatatattcgacaaactggggtgatagtactcatggcccaaatt
gggtgttttgtgccatgtgagtcagcagaagtgtccattgtggactgcatcttagcccga
gtaggggctggtgacagtcaattgaaaggagtctccacgttcatggctgaaatgttggaa
actgcttctatcctcaggtctgcaaccaaagattcattaataatcatagatgaattggga
agaggaacttctacctacgatggatttgggttagcatgggctatatcagaatacattgca
acaaagattggtgctttttgcatgtttgcaacccattttcatgaacttactgccttggcc
aatcagataccaactgttaataatctacatgtcacagcactcaccactgaagagacctta
actatgctttatcaggtgaagaaaggtgtctgtgatcaaagttttgggattcatgttgca
gagcttgctaatttccctaagcatgtaatagagtgtgctaaacagaaagccctggaactt
gaggagtttcagtatattggagaatcgcaaggatatgatatcatggaaccagcagcaaag
aagtgctatctggaaagagagcaaggtgaaaaaattattcaggagttcctgtccaaggtg
aaacaaatgccctttactgaaatgtcagaagaaaacatcacaataaagttaaaacagcta
aaagctgaagtaatagcaaagaataatagctttgtaaatgaaatcatttcacgaataaaa
gttactacgtga

>gi568815596r:47420910_47670245|GENSCAN_predicted_peptide_2|87_aa
MQIREMQVKTTMSYNFTLITIVKIKKSDGHLMAQDDCQGFNQCIHILGSKNDESAKMLIP
PLKKQKYTASTCIFHGRTESHIYAVGA

>gi568815596r:47420910_47670245|GENSCAN_predicted_CDS_2|264_bp
atgcagatcagggaaatgcaagtcaaaaccacaatgagctacaacttcacactgattacg
atagttaaaatcaaaaagtcagatggtcacctcatggcccaagatgactgccagggcttc
aaccaatgcatccacattttaggcagcaagaacgatgagagtgcaaagatgcttatccca
cctttaaagaaacaaaagtacacagcttccacttgcatcttccatgggagaactgagtca
cacatctatgctgttggagcctag

>gi568815596r:47420910_47670245|GENSCAN_predicted_peptide_3|172_aa
MERMAEREGGASLTDGITVTALAPDHLLQSSGYEPQSDRAKRPVPHFADMEKETSWGKEI
CLQSARETEPGQCSEKAASQDSGFSVATVIWLCMEKTNPLDKQYLERDSIFPDPKHIMAS
GAKYPDICKMASFGFLVLQALVPKDAAGRGALDRPPLEVAALCSVLNGLTLS

>gi568815596r:47420910_47670245|GENSCAN_predicted_CDS_3|519_bp
atggaaaggatggcagagcgggaaggaggagccagccttaccgatggcatcactgtcact
gcgctagccccagaccacctgctccagagttctggttatgaacctcagagtgacagagcc
aaaagaccagtgcctcattttgctgacatggaaaaggaaacttcgtgggggaaagagatc
tgcttgcagtcggccagagagacagaaccagggcagtgctctgagaaggctgctagccaa
gactctggattctctgtggccacagtcatatggctgtgcatggagaagacaaatcctctt
gataaacaatatttagaaagggattctatctttcctgaccccaaacacatcatggcctct
ggagccaaataccctgacatttgcaagatggcttcttttgggttcctggtgctgcaggcc
ctggttcccaaggacgcagctggcagaggtgccctggaccgcccaccattagaagtagct
gccctgtgctctgtgctaaatggactaactctgagctga

>gi568815596r:47420910_47670245|GENSCAN_predicted_peptide_4|811_aa
MEAGKSKIKALADLVADEQERVSSLAQSHTDNHRLHEPGLQEGIRAVPREDPQWNYQADS
PRGPLDHHRRRASGNSQWRQAKLIALTRALTLAKGLRINIYTDSKYAFRILHHHAVIWAE
RGFLPTQGSSIINATLIKTLLKAALLPKEAGVIHCKGHQKASDPITQGNAYADKPIGFGL
EKLLTFHLSQLQEYRGTKWREKSHRKVNHDENTRGLAAEPRARERRVRSRGSRRGVGARR
GAPLPGHPLGHGTRVWPERRGGGGGAPLSGLWEGDEGLCEGGEGLRGGPGPLATILTLLL
PPGGCRGPGPERRPGPGAELRTMSSRSPRPPPRRSRRRLPRPSCCCCCCRRSHLNEDTGR
FVLLAALIGLYLVAGATVFSALESPGEAEARARWGATLRNFSAAHGVAEPELRAFLRHYE
AALAAGVRADALRPRWDFPGAFYFVGTVVSTIVREESPPLALTPGRLCSNTGRLCDLTFK
SYINIAKEQEHPAIQQSFPRVSTVSSENRKEGFGMTTPATVGGKAFLIAYGLFGCAGTIL
FFNLFLERIISLLAFIMRACRERQLRRSGLLPATFRRGSALSEADSLAGWKPSVYHVLLI
LGLFAVLLSCCASAMYTSVEGWDYVDSLYFCFVTFSTIGFGDLVSSQHAAYRNQGLYRLG
NFLFILLGVCCIYSLFNVISILIKQVLNWMLRKLSCRCCARCCPAPGAPLARRNAITPGS
RLRRRLAALGADPAARDSDAEGRRLSGELISMRDLTASNKVSLALLQKQLSETANGYPRS
VCVNTRQNGFSGGVGALGIMNNRLAETSASR

>gi568815596r:47420910_47670245|GENSCAN_predicted_CDS_4|2436_bp
atggaggctgggaagtccaagatcaaggcactggcagatttggtagctgatgaacaggaa
agagtttcttctctagcccaatctcacactgacaaccaccggcttcatgagccaggcctc
caggaaggcattagagcagttccccgagaagatccccaatggaactatcaggcagattcc
cccagaggccccctggaccatcatagacgccgagcttcaggtaactcacagtggaggcaa
gccaaactcattgccttaactcgggccctcactcttgcaaagggactacgcatcaatatt
tatactgactctaaatatgccttccgtatcctgcaccaccatgctgttatatgggctgaa
agaggtttcctccctacgcaagggtcctccatcattaatgccactttaataaaaactctt
ctcaaggccgctttacttccaaaggaagctggagtcattcactgcaagggccatcaaaag
gcatcagatcccatcactcagggcaacgcttatgctgataagcctattggttttggattg
gaaaagttattgacatttcatctctcccaattgcaagaatatagaggaaccaagtggagg
gaaaaatcccacaggaaagtcaaccatgatgagaacacaaggggcctagctgcggagccc
cgcgcccgagagcggcgggtaaggagccgcgggagccggcgaggcgtcggggcgcgcaga
ggagcgcccctgcccgggcacccgctgggccacgggactcgcgtgtggcctgagcgccgg
ggaggaggcggaggcgcccctctgtccgggctctgggaaggcgacgaggggctctgcgaa
ggcggcgaggggctccgcggcggccccggacccctggccaccatcctcacgctcctgctc
ccgccggggggatgtcgtggcccgggccccgagcgccgccccggccccggggctgagctc
cggaccatgtcctcccgcagcccccggcccccgccccgccgtagccgccgccgcctgccg
cgcccctcctgctgctgctgctgctgccgccgttcgcacctcaacgaggacaccggccgc
ttcgtgctgctggcggcgctcatcggcctctacctggtggcgggtgccacagtcttctcg
gcgctcgagagccccggcgaggcggaggcgcgggcgcgctggggcgccacgctgcgcaac
ttcagcgctgcgcacggcgtggccgagccagagctgcgcgccttcctccggcactacgag
gccgcgctggccgccggcgtccgcgccgacgcgctgcgcccgcgctgggacttccccggc
gccttctacttcgtgggcaccgtggtgtcaaccatagtgagggaagaaagcccacctctg
gcgctcaccccgggccgcctgtgctccaacactggccggctctgtgatctgacctttaag
agttacatcaatattgccaaagaacaggagcacccagcaatacagcagagcttcccacgg
gtttctacagtgtcttcagagaaccgcaaggagggtttcggcatgaccacccccgcgacg
gtgggcgggaaggccttcctcatcgcctacgggctgttcggctgcgctgggaccatcctg
ttcttcaacctcttcctggagcgcatcatctcgctgctggccttcatcatgcgcgcctgc
cgggagcgccagctgcgccgcagcggcctgctgcccgccaccttccgccgcggctccgcg
ctctcggaggccgacagcctggcgggctggaagccctcggtgtaccacgtgctgctcatc
ctgggcctgttcgccgtgctgctgtcctgctgcgcctcggccatgtacaccagcgtggag
ggctgggactacgtggactcgctctacttctgcttcgtcaccttcagcaccatcggcttc
ggggacctggtgagcagccagcacgccgcctaccggaaccaggggctctaccgcctgggc
aacttcctcttcatcctgctcggcgtgtgctgcatttactcgctcttcaacgtcatctcc
atcctcatcaagcaggtgctcaactggatgctgcgcaagctgagctgccgctgctgcgcg
cgctgctgcccggctcctggcgcgcccctggcccggcgcaatgccatcaccccaggctcc
cggctgcgccgccgcctggccgcgctcggtgccgaccccgcggcccgcgacagcgacgcc
gagggccgccgcctctcgggcgagctcatctccatgcgcgacctcacggcctccaacaag
gtgtcgctggcgctgctgcagaagcagctgtcggagacggccaacggctacccgcgcagc
gtgtgcgtcaacacgcgccagaacggcttctcgggcggcgtgggcgcgctgggcatcatg
aacaaccggctggccgagaccagcgcctccaggtag

>gi568815596r:47420910_47670245|GENSCAN_predicted_peptide_5|45_aa
MMKRDFQGAVGGMEEKTSYGPGQRQGGLNRALSKPFFLWGRVPVT

>gi568815596r:47420910_47670245|GENSCAN_predicted_CDS_5|138_bp
atgatgaagagggactttcaaggtgcagttggagggatggaagagaagacaagttatggt
ccaggacaaagacaaggaggcctgaacagggctctgtcgaagcccttcttcctctggggc
agggtgccggtcacttga

>gi568815596r:47420910_47670245|GENSCAN_predicted_peptide_6|149_aa
XPVTKKVKKNRLYCDCFSLWEDCLANWEVKPDEKGHNGKVRATGKKVPGVDKNKETVIPA
KRKDRPFQRETEQKAMMYDLQATCAVHRVASPMGYGQGLKAKATNMCGSPQGTLLILSDY
GCAFTVWGEDVPLEALMVKFQDYHNLALL

>gi568815596r:47420910_47670245|GENSCAN_predicted_CDS_6|450_bp
nngccagttaccaaaaaggtaaagaagaaccgcctgtactgtgactgcttctccttatgg
gaagactgtttagctaactgggaagtcaaacctgatgaaaaaggccacaacggcaaagtt
agagccacaggaaaaaaagttccaggagttgacaaaaataaggagacagttatcccagcc
aagcgaaaagatagaccttttcaaagggaaacagaacagaaggcaatgatgtatgacctg
caagccacgtgtgccgtacaccgagttgccagccccatgggatatggccagggcctcaag
gcaaaggctaccaacatgtgtgggtctcctcagggcacactccttattttgtctgactat
gggtgtgcatttacagtctggggtgaagatgtgcctctagaagcactaatggtgaagttt
caggactatcacaacctggccttgctctag