GENSCAN 1.0	Date run:  6-Nov-116	Time: 18:31:23

Sequence gi568815596r:39636738_39879239 : 242502 bp : 39.33% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -     51     46    6                               1.05
 1.02 Term -   8580   8439  142  2  1   47   47   157 0.806   3.92
 1.01 Init -  13370  13240  131  2  2   74   63   132 0.951   8.97
 1.00 Prom -  15430  15391   40                              -3.65

 2.00 Prom +  18507  18546   40                              -6.35
 2.01 Init +  29238  29637  400  2  1   98  105   427 0.999  40.27
 2.02 Term +  51587  51744  158  0  2   54   54   127 0.022   3.01
 2.03 PlyA +  52717  52722    6                               1.05

 3.00 Prom +  55883  55922   40                              -3.85
 3.01 Init +  58851  58929   79  2  1   68  111    13 0.447   2.89
 3.02 Intr +  67344  67457  114  1  0   98   88    90 0.648   9.50
 3.03 Intr +  70312  70449  138  2  0   -4   96   134 0.217   4.51
 3.04 Intr +  80273  80508  236  0  2   84   72    98 0.464   4.28
 3.05 Intr +  83773  83943  171  0  0  103   34   112 0.195   6.52
 3.06 Intr +  90473  90562   90  1  0   95   30    98 0.513   3.97
 3.07 Term +  96607  96693   87  0  0   70   48   158 0.556   6.68
 3.08 PlyA +  99509  99514    6                               1.05

 4.08 PlyA -  99705  99700    6                               1.05
 4.07 Term - 100322  99998  325  1  1   60   43   188 0.801   4.75
 4.06 Intr - 107741 107633  109  0  1   62  115    73 0.691   5.82
 4.05 Intr - 118672 118558  115  1  1   94   82   124 0.994  11.50
 4.04 Intr - 119223 119152   72  0  0   91  100    89 0.997   9.08
 4.03 Intr - 124681 124594   88  0  1   94  116    62 0.773   8.65
 4.02 Intr - 132356 132208  149  2  2   61    2   100 0.072  -3.19
 4.01 Init - 133365 132973  393  0  0   28   85   327 0.807  23.18
 4.00 Prom - 133893 133854   40                              -4.65

 5.00 Prom + 139358 139397   40                              -6.25
 5.01 Init + 142200 142314  115  2  1   51   35   168 0.313   6.99
 5.02 Term + 150904 151031  128  2  2   42   42   110 0.321  -0.74
 5.03 PlyA + 151146 151151    6                               1.05

 6.04 PlyA - 151278 151273    6                               1.05
 6.03 Term - 153619 153479  141  1  0   62   38   110 0.446   0.35
 6.02 Intr - 155655 155600   56  1  2   85   92    25 0.410   0.38
 6.01 Init - 165886 165700  187  1  1   51   92    99 0.423   5.87
 6.00 Prom - 168750 168711   40                              -3.35

 7.02 PlyA - 168867 168862    6                               1.05
 7.01 Sngl - 173163 172078 1086  0  0   34   42   332 0.926  20.00
 7.00 Prom - 174662 174623   40                              -6.55

 8.04 PlyA - 174829 174824    6                               1.05
 8.03 Term - 175867 175466  402  1  0  -36   49   228 0.758   0.67
 8.02 Intr - 176375 176082  294  2  0   37   71   153 0.237   4.78
 8.01 Init - 180301 180179  123  1  0   80   49   109 0.507   6.42
 8.00 Prom - 188739 188700   40                              -3.35

 9.02 PlyA - 189499 189494    6                               1.05
 9.01 Sngl - 192943 192566  378  1  0   36   49   230 0.493   9.81
 9.00 Prom - 196048 196009   40                              -6.55

10.00 Prom + 196399 196438   40                              -7.25
10.01 Init + 202291 202364   74  0  2   99   45     5 0.100  -2.10
10.02 Intr + 202686 202792  107  0  2   84   91    95 0.226   8.34
10.03 Term + 208783 208907  125  2  2   32   47   174 0.321   5.27
10.04 PlyA + 210541 210546    6                               1.05

11.00 Prom + 213949 213988   40                              -5.85
11.01 Init + 214453 214518   66  0  0   55   92    37 0.452   1.92
11.02 Intr + 218145 218411  267  2  0   38   98   128 0.836   5.61
11.03 Term + 222196 222462  267  0  0   79   55   120 0.813   2.31
11.04 PlyA + 223771 223776    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr - 132356 132164  193  2  1   61   96    98 0.841   6.04


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:39636738_39879239|GENSCAN_predicted_peptide_1|90_aa
MEEEGQEPRNARENFHQVKKARKWKWIPPKRLQKEYGLANTLAQSFRRYPEEGIVIIGGD
SSMLVTAPEDLPRGQDVEVEDSDIDDPDTM

>gi568815596r:39636738_39879239|GENSCAN_predicted_CDS_1|273_bp
atggaggaagagggccaagaaccaaggaatgcacgtgaaaacttccaccaggtgaaaaag
gcaaggaaatggaaatggattccccctaagagactccagaaggaatatggcctcgctaac
actttagcccagtccttcaggaggtatccagaagaaggcattgttatcattggaggtgac
agctccatgcttgttactgcccctgaagaccttccaaggggacaagatgtggaggtggaa
gacagcgatattgatgatcctgacactatgtag

>gi568815596r:39636738_39879239|GENSCAN_predicted_peptide_2|185_aa
MEPRALVTALSLGLSLCSLGLLVTAIFTDHWYETDPRRHKESCERSRAGADPPDQKNRLM
PLSHLPLRDSPPLGRRLLPGGPGRADPESWRSLLGLGGLDAECGRPLFATYSGLWRKCYF
LGIDRDIDTLILKDLGRDLEMPVELLEELDTWEIVIKAAKDRGPCPDCHFLLLPLMALGF
GFFLP

>gi568815596r:39636738_39879239|GENSCAN_predicted_CDS_2|558_bp
atggagccgcgggcgctcgtcacggcgctcagcctcggcctcagcctgtgctccctgggg
ctgctcgtcacggccatcttcaccgaccactggtacgagaccgacccccggcgccacaag
gagagctgcgagcgcagccgcgcgggcgccgaccccccggaccagaagaaccgcctgatg
ccgctgtcgcacctgccgctgcgggactcgcccccgctggggcgccggctgctcccgggc
ggcccggggcgcgccgaccccgagtcctggcgctcgctcctggggctcggcgggctggac
gccgagtgcggccggcccctcttcgccacctactcgggcctctggaggaagtgctacttc
ctgggcatcgaccgggacatcgacaccctcatcctgaaagacttgggtcgtgatttagag
atgcctgtggagctgctggaggaactagacacatgggaaatagtgataaaggctgctaaa
gacagagggccctgccctgactgtcacttcctgctgctgccactaatggctttgggattt
ggcttcttcctaccatga

>gi568815596r:39636738_39879239|GENSCAN_predicted_peptide_3|304_aa
MVTEMDMMLPGDNLGREGSSPWEPVTGIAQRCTAIKYHFSQPIRLRNIPFNLTKTIQQDE
WHLLHLRRITAGFLGMAVAVLLCGCIVATVSFFWEESLTQHVAGLLFLMTGIFCTISLCT
YAASISYDLNRLPKLIYSLPADVEHGYSWSIFCAWCSLGFIVAAGGLCIAYPFISRTKIA
QLKSGRDSTLLHNTPGHLPQTCCIASNPFLTSYAPHMNCLATHNQIIDSFKEESVPCPGA
QPTQCLIAVTAAIQAGPVYQGAFPEPDMEQVLTNCLHINALCHQTGAAEREGCQWNELNE
QGAE

>gi568815596r:39636738_39879239|GENSCAN_predicted_CDS_3|915_bp
atggtcacagagatggacatgatgttgccaggggacaatttggggagggagggaagtagc
ccctgggaaccagtcacaggtattgcgcagcgatgcacggccatcaagtaccacttttct
cagcccatccgcttgcgaaacattccttttaatttaaccaagaccatacagcaagatgag
tggcacctgcttcatttaagaagaatcactgctggcttcctcggcatggccgtagccgtc
cttctctgcggctgcattgtggccacagtcagtttcttctgggaggagagcttgacccag
cacgtggctggactcctgttcctcatgacagggatattttgcaccatttccctctgtact
tatgccgccagtatctcgtatgatttgaaccggctcccaaagctaatttatagcctgcct
gctgatgtggaacatggttacagctggtccatcttttgcgcctggtgcagtttaggcttt
attgtggcagctggaggtctctgcatcgcttatccgtttattagccggaccaagattgca
cagctaaagtctggcagagactccacgcttctacacaacactcccggacaccttcctcaa
acatgctgcattgcttcaaatcctttcctgaccagttacgctccgcacatgaattgcctg
gcaacccataaccagatcatagactctttcaaggaggaatctgtgccttgtcccggtgct
cagcccacccagtgcctgatagctgtcacagcagccattcaggcagggccagtttaccaa
ggagcattcccagaacctgacatggagcaagtactcactaactgcctgcatattaatgct
ttgtgtcaccagacaggagcagctgaacgtgaaggatgccaatggaatgagttgaacgaa
caaggtgcggaataa

>gi568815596r:39636738_39879239|GENSCAN_predicted_peptide_4|416_aa
MQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGENEIIAKKLKIEQMQ
KIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQNDIEKAIDTHNQNDLTFRVSCRC
SGTIGKAFTAQVLYMGLSPGPRLQMHMRSQQCREERTPQTVAITRPHQLALTKFSDVKGH
WVSLASRAYIKTAGLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVG
ADVSDSQLLGTWDNLKAAGLEDKIELLKISVIELPLPSESVDIIISDIPFGKKFKLGKDI
KSILQEMERVLHVGGTIVLLLSEDHHRRLTDCKESNIPFNSKDSHTDEPGIKKCLNPEEK
TGAFKTASTSFEASNHKFLDRMSPFGSLVPVECYKVSLGKTDAFICKYKKSHSSGL

>gi568815596r:39636738_39879239|GENSCAN_predicted_CDS_4|1251_bp
atgcaaagacttataaatgaagatccaggaagttggttgaatgccatttcaatttggaaa
aatcttcttgaacttgatgcaaaaaaggaaaaactttctcagagagatgataaccaacta
aaaagaaaagtgggagaaaatgaaatcattgcaaagaaattaaaaatagaacaaatgcaa
aagatagaagagaatagggactgccagctggaaaaacaaataaaagaagaaactctggag
caaagagattttaccactaaaagcgaaaagtttcaagaagaagaatttcagaatgacata
gagaaagcaattgatactcataatcagaatgacttgactttcagagtatcttgtcgctgc
agtggaactattggaaaggccttcactgcacaggtcctgtacatgggattgtcaccagga
cctagactgcaaatgcacatgaggtctcagcaatgtagagaagagcgaacaccacaaact
gttgccatcaccagacctcatcagttggcccttacaaagttcagtgatgttaaaggccat
tgggtttccctagccagcagagcttacatcaagacagctggactgcgatctacaatagcg
tgggcaatggcatctctggctgacattaaggctggtgcatttgttttagatccaatgtgt
ggacttggaacaatacttttggaagctgctaaagaatggccagatgtgtattatgtaggt
gctgatgtcagcgactcacagttactaggtacttgggacaatctgaaagctgcaggcctt
gaggataaaattgaattacttaaaatctctgttatagaattgccattgccttcagaaagt
gttgatattattatttctgacattccatttgggaaaaagtttaagttaggaaaagacatc
aaaagcattctacaagaaatggaaagagtgcttcatgttggcggaaccattgtattgttg
cttagtgaagatcaccacaggcgccttacagattgtaaagagagcaacatccctttcaat
tccaaggacagtcacacagatgaacctggaattaaaaagtgcttgaatcctgaagaaaaa
actggtgcattcaagacagcgtcaacttcattcgaagccagtaaccacaaattcttagac
agaatgtcaccatttggctccttggtaccagtggaatgctacaaagttagccttggaaag
acagatgcgttcatatgtaaatataagaagtcgcactcttctggactgtag

>gi568815596r:39636738_39879239|GENSCAN_predicted_peptide_5|80_aa
MVASLGRSGSACQSTSGVGDRRVEQRGAPATLSRVHDWGILEEEIIIEDDCSVCVIAPEY
LPVGRDKEVKDSDFDDPDTV

>gi568815596r:39636738_39879239|GENSCAN_predicted_CDS_5|243_bp
atggtggcttctctcggccggagcggaagcgcctgccagtcaacctcgggggtcggcgac
cgtcgcgtggaacagagaggggcgccagcgacgctttcccgcgtccacgactggggtatt
ctagaagaagagattatcatagaagatgactgctctgtgtgtgttattgcccctgaatac
ctcccagtgggtagagataaggaggtgaaagacagtgactttgatgatcctgacactgtg
tag

>gi568815596r:39636738_39879239|GENSCAN_predicted_peptide_6|127_aa
MHALLGQLGQLDPMRKWKKVVRLDVPSKFHAEMQSPVLEVGPDGRCLGHGGGSLMAWCCP
RDKEKQKVFQKIQQSFTDQNQHVIFVTYSLFIPPSAFEIPNKNLLVLRLKGHHGTCRHVM
SPPEAQL

>gi568815596r:39636738_39879239|GENSCAN_predicted_CDS_6|384_bp
atgcatgctctcttggggcaacttggtcaactggatcccatgagaaaatggaagaaggta
gtacgtttggatgtcccttcgaaatttcatgctgagatgcaatctccagtgttggaggtg
ggacctgatgggaggtgtttgggtcatgggggtggatccctaatggcttggtgctgtccc
cgagataaagaaaagcaaaaagttttccagaaaatccagcaaagtttcactgaccagaac
cagcatgtgatctttgtgacttactccctgttcatacccccctccgcttttgaaatccct
aataaaaacttgctggttttgcggctcaaggggcatcacggaacctgccgacatgtgatg
tcacctccagaggcccagctgtaa

>gi568815596r:39636738_39879239|GENSCAN_predicted_peptide_7|361_aa
MLKTLNKLGIDGKHLTIIRAIYDKPTTNIVLIGQKLEALPLKTGTRQGCPLSSFLIKTVL
EVLTRAIRQEKEIKGIQTGREEVKLSLFADDLIVYLEKPFVSTPKLLKLIRNFSKVSGYK
INVQKSQAFLYTNNRQTESQIMSELPSTIATKRIKYLGIQLTRDMKDHFKENYKPLLKEI
KEDTNKRKNIPCLWIERINIVKMAILPKVIYRFNAIPIKLPLTFITELEKTTLNFIWNQK
IARIAKTILSKKNKAGSIMLPDFKLYYKATVTKAAWFWYQNRQIDQWNRTEASEVTPHIY
NHLIFDKPDKNKKWGKDSLFNKWCWENWIAICRKLKLDPFLIPYTKINSRWIKDLNVRPK
P

>gi568815596r:39636738_39879239|GENSCAN_predicted_CDS_7|1086_bp
atgctaaaaacactcaataaattaggtattgatggaaagcatctcacaataataagagct
atttatgacaaacccacaaccaatattgtactgattgggcaaaagctggaagcactccct
ttgaaaactggcacaagacaaggatgccctctctcatcattcctaatcaaaacagtatta
gaagttctgaccagggcaatcaggcaagagaaagaaataaagggtattcaaaccggaaga
gaggaagtcaaattgtccctgtttgcagatgacttgattgtatatttagaaaaacccttt
gtctcaaccccaaaactccttaagctgataagaaacttcagcaaagtctcaggatacaaa
atcaatgtgcaaaaatcacaagcattcctatacaccaataatagacaaacagagagccaa
atcatgagtgaactcccatccacaattgctacaaagagaataaaatacctaggaatacaa
ctaacaagggatatgaaggaccacttcaaggagaactacaaaccactgctcaaggaaata
aaagaggacacaaacaaacggaaaaatattccatgcttatggatagaaagaatcaatatc
gtgaaaatggccatactgcccaaagtaatttatagattcaatgctattcccatcaagcta
ccattgaccttcatcacagaattagaaaaaactactttaaatttcatatggaaccaaaaa
atagcccgtatagccaagacaatcctaagcaaaaagaacaaagccggaagcatcatgcta
cctgacttcaaactatactacaaggctacagtaaccaaagcagcatggttctggtaccaa
aacagacaaatagaccaatggaacagaacagaggcctcagaagtaacaccacacatctac
aaccatctgatctttgacaaacctgacaaaaacaagaaatggggaaaggattccctattt
aataaatggtgttgggaaaactggatagccatatgcagaaaactgaaactggaccccttc
cttataccttatacaaaaattaactcaagatggattaaagacttaaacgtaagaccaaaa
ccataa

>gi568815596r:39636738_39879239|GENSCAN_predicted_peptide_8|272_aa
MHTYTSTDPAANAPTKHFGQHPPLEYCCQWTWNISVPLEQQGLTDTSYRRAPAGICWVPL
REKFPEEGASSSFWCSAASAGATQANSVWSGPPVNSSTPAEERPIRRKTNKHKAIASTST
KRTPMQKTPSKGDQHQRPKEAKNLDKRIQELTTRITSIEKNINGLTELKNTAQKLQDPYT
SINSQTNLAKERTSETEVQLNEIKYGHRIREKRMKMNEQSLQEVWDFGKRPNLHLIGVSE
SEGENGTKLENTLQDNIQDNFPNLARQANTQI

>gi568815596r:39636738_39879239|GENSCAN_predicted_CDS_8|819_bp
atgcacacatacacaagcacagaccctgctgccaacgccccgacaaagcactttggccag
catcccccactggagtattgttgccagtggacctggaacatctcagtccctctggaacag
caggggttgacagacacctcatacaggagagctccagctggcatctgttgggtgcccctc
agggaaaagtttccagaggaaggagcaagcagctccttctggtgttctgcagcctctgct
ggtgctacccaggcaaacagcgtctggagtggacctccagtaaactccagcacacctgca
gaagagcggcctattagaagaaaaactaacaaacacaaagcaatagcatcaacatcaaca
aaaaggacacccatgcaaaaaacaccatccaaaggtgaccaacatcaaagaccaaaggaa
gctaagaaccttgataaaaggatacaggaactgacaactagaataaccagtatagagaag
aacataaatggcctgacggagctgaaaaacacagcacaaaaacttcaggacccatacaca
agtatcaatagccaaaccaatctagccaaagaaaggacatctgagactgaagttcaactt
aatgaaataaagtatggacacaggattagagaaaaaagaatgaaaatgaatgaacaaagc
ctccaagaagtatgggactttgggaaaagaccaaatctacatttgattggtgtatctgaa
agtgaaggggagaatggaaccaagttggaaaacacacttcaggataatatccaggacaac
ttccccaacctagcaagacaggccaacacacaaatttag

>gi568815596r:39636738_39879239|GENSCAN_predicted_peptide_9|125_aa
MKRNKQSLQEIWDNVKRPNLRFNGVPESHEENGTKLENTLQDIIQENFPNLAREPNTKIQ
DTQRTLQRYSSRRPTPRHIIIRFTKVERKEKMLRAAREKGQVTHNRKPIRLTADLSAENL
QARRE

>gi568815596r:39636738_39879239|GENSCAN_predicted_CDS_9|378_bp
atgaaaaggaacaaacaaagcctccaagaaatatgggacaatgtgaaaagaccaaaccta
cgtttcaatggtgtacctgaaagtcatgaagagaatggaaccaagttggaaaacactctt
caggatattatccaggaaaacttccccaacctagcaagagagcccaacactaaaattcag
gatacacagagaacactacaaagatactcctcaagaagaccaaccccaagacacataatc
atcagattcaccaaggttgaaaggaaggaaaaaatgttaagagcagccagagaaaagggt
caggttacccacaataggaaacccatcagactaacagctgatctctctgcagaaaaccta
caagccagaagagagtag

>gi568815596r:39636738_39879239|GENSCAN_predicted_peptide_10|101_aa
MGHVARLHFPPAETTLDFTVRGMQRSGRGGDSGTGDCKAPLSDFRELGSQRNTGPWLQCS
GKNRDAEKVGFREVWAQEEESLMVRTLEEPEEPATPQHQPL

>gi568815596r:39636738_39879239|GENSCAN_predicted_CDS_10|306_bp
atggggcatgtggcacgtttgcacttccctcctgcagaaacaacactggatttcactgtt
aggggcatgcaaaggagtggcaggggtggagacagtggcactggtgactgcaaagcgcct
ctcagtgacttccgggagttgggttctcagaggaacactgggccatggctgcagtgttca
ggaaaaaaccgagatgcagaaaaagtgggcttcagggaggtttgggctcaggaagaagag
tctttaatggtgaggactttagaagaaccggaagaaccagctacacctcagcaccagccc
ctatga

>gi568815596r:39636738_39879239|GENSCAN_predicted_peptide_11|199_aa
MTGTNKDGLKYLCKPFDVASKAWLHCQKKLQRVPAQKLIIHVSCNVLEMGNRFAKILQQA
GSSDKCLNNAQLINNRIQKGEGNTTNQAELFSVKGEKKKKDQGKIGEGKYKILGENSQTM
FFLCSHTTTQSPTQKTSVTKGVEFFLHIPGGRHQLGVFQFNSGTIYAEDSVRSHRSEAQS
PRLPLFSQTQVTSSNIWNF

>gi568815596r:39636738_39879239|GENSCAN_predicted_CDS_11|600_bp
atgactggcactaataaagatggtttaaaatatctttgcaagccttttgatgttgcttca
aaagcatggttacattgtcagaagaagctgcagcgtgtacctgctcagaaactcatcatc
cacgtctcctgcaatgtgttggagatgggaaataggtttgcaaaaattctacaacaagct
ggttcaagtgataagtgcctcaacaatgcgcaattgattaataatcgtatccagaaaggg
gaaggaaacacaacaaaccaggcagaactattttctgttaagggggaaaaaaaaaaaaaa
gatcaggggaagattggggaaggcaaatataagattcttggagaaaactctcaaaccatg
tttttcctctgttctcacacaaccacccaatcaccaactcagaagacttctgtgaccaaa
ggtgtggagtttttccttcacataccaggtggcagacaccagctgggtgtcttccaattc
aattctggcactatctatgctgaagacagtgtcagatcccataggtcagaggctcagtcc
ccaagactgcccctcttctcccagacacaagtcacaagttcaaacatctggaacttctga