Result of FASTA (omim) for pF1KB9897
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB9897, 510 aa
  1>>>pF1KB9897 510 - 510 aa - 510 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.0088+/-0.000759; mu= -23.2357+/- 0.045
 mean_var=1148.5217+/-261.513, 0's: 0 Z-trim(114.2): 194  B-trim: 0 in 0/55
 Lambda= 0.037845
 statistics sampled from 23785 (23913) to 23785 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.633), E-opt: 0.2 (0.28), width:  16
 Scan time: 10.580

The best scores are:                                      opt bits E(85289)
NP_001129124 (OMIM: 176871) interferon-induced, do ( 510) 3303 197.5 7.8e-50
XP_016859992 (OMIM: 176871) PREDICTED: interferon- ( 508) 2177 136.0 2.5e-31
NP_002750 (OMIM: 176871) interferon-induced, doubl ( 551) 1664 108.1 7.1e-23
XP_011531289 (OMIM: 176871) PREDICTED: interferon- ( 551) 1664 108.1 7.1e-23
NP_001129123 (OMIM: 176871) interferon-induced, do ( 551) 1664 108.1 7.1e-23


>>NP_001129124 (OMIM: 176871) interferon-induced, double  (510 aa)
 initn: 3303 init1: 3303 opt: 3303  Z-score: 1015.6  bits: 197.5 E(85289): 7.8e-50
Smith-Waterman score: 3303; 100.0% identity (100.0% similar) in 510 aa overlap (1-510:1-510)

               10        20        30        40        50        60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB9 RSLAPRFDLPDMKETKYTVDKRKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSLAPRFDLPDMKETKYTVDKRKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB9 ESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB9 VDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQIS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB9 SQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSK
              430       440       450       460       470       480

              490       500       510
pF1KB9 KPEDRPNTSEILRTLTVWKKSPEKNERHTC
       ::::::::::::::::::::::::::::::
NP_001 KPEDRPNTSEILRTLTVWKKSPEKNERHTC
              490       500       510

>>XP_016859992 (OMIM: 176871) PREDICTED: interferon-indu  (508 aa)
 initn: 2288 init1: 1664 opt: 2177  Z-score: 683.4  bits: 136.0 E(85289): 2.5e-31
Smith-Waterman score: 2838; 84.8% identity (84.8% similar) in 551 aa overlap (1-510:1-508)

               10        20        30        40        50        60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
              190       200       210       220       230       240

              250       260                                        
pF1KB9 RSLAPRFDLPDMKETKYTVDKR--------------------------------------
       ::::::::::::::::::::::                                      
XP_016 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
              250       260       270       280       290       300

               270       280       290       300       310         
pF1KB9 ---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
              310       320       330       340       350       360

     320       330       340       350       360       370         
pF1KB9 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
XP_016 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLK----
              370       380       390       400       410          

     380       390       400       410       420       430         
pF1KB9 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
                                              :::::::::::::::::::::
XP_016 ---------------------------------------ISSQDYGKEVDLYALGLILAE
                                               420       430       

     440       450       460       470       480       490         
pF1KB9 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
       440       450       460       470       480       490       

     500       510
pF1KB9 KSPEKNERHTC
       :::::::::::
XP_016 KSPEKNERHTC
       500        

>>NP_002750 (OMIM: 176871) interferon-induced, double-st  (551 aa)
 initn: 1703 init1: 1664 opt: 1664  Z-score: 531.7  bits: 108.1 E(85289): 7.1e-23
Smith-Waterman score: 3141; 92.4% identity (92.4% similar) in 542 aa overlap (1-501:1-542)

               10        20        30        40        50        60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
              190       200       210       220       230       240

              250       260                                        
pF1KB9 RSLAPRFDLPDMKETKYTVDKR--------------------------------------
       ::::::::::::::::::::::                                      
NP_002 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
              250       260       270       280       290       300

               270       280       290       300       310         
pF1KB9 ---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
              310       320       330       340       350       360

     320       330       340       350       360       370         
pF1KB9 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
              370       380       390       400       410       420

     380       390       400       410       420       430         
pF1KB9 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
              430       440       450       460       470       480

     440       450       460       470       480       490         
pF1KB9 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
              490       500       510       520       530       540

     500       510
pF1KB9 KSPEKNERHTC
       ::         
NP_002 KSPEKNERHTC
              550 

>>XP_011531289 (OMIM: 176871) PREDICTED: interferon-indu  (551 aa)
 initn: 1703 init1: 1664 opt: 1664  Z-score: 531.7  bits: 108.1 E(85289): 7.1e-23
Smith-Waterman score: 3141; 92.4% identity (92.4% similar) in 542 aa overlap (1-501:1-542)

               10        20        30        40        50        60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
              190       200       210       220       230       240

              250       260                                        
pF1KB9 RSLAPRFDLPDMKETKYTVDKR--------------------------------------
       ::::::::::::::::::::::                                      
XP_011 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
              250       260       270       280       290       300

               270       280       290       300       310         
pF1KB9 ---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
              310       320       330       340       350       360

     320       330       340       350       360       370         
pF1KB9 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
              370       380       390       400       410       420

     380       390       400       410       420       430         
pF1KB9 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
              430       440       450       460       470       480

     440       450       460       470       480       490         
pF1KB9 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
              490       500       510       520       530       540

     500       510
pF1KB9 KSPEKNERHTC
       ::         
XP_011 KSPEKNERHTC
              550 

>>NP_001129123 (OMIM: 176871) interferon-induced, double  (551 aa)
 initn: 1703 init1: 1664 opt: 1664  Z-score: 531.7  bits: 108.1 E(85289): 7.1e-23
Smith-Waterman score: 3141; 92.4% identity (92.4% similar) in 542 aa overlap (1-501:1-542)

               10        20        30        40        50        60
pF1KB9 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB9 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEAKNAAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB9 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEETSVKSDYLSSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB9 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFATTCESQSNSLVTSTLASESSSEGDFSADTSEINSNSDSLNSSSLLMNGLRNNQRKAK
              190       200       210       220       230       240

              250       260                                        
pF1KB9 RSLAPRFDLPDMKETKYTVDKR--------------------------------------
       ::::::::::::::::::::::                                      
NP_001 RSLAPRFDLPDMKETKYTVDKRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKY
              250       260       270       280       290       300

               270       280       290       300       310         
pF1KB9 ---KAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTK
              310       320       330       340       350       360

     320       330       340       350       360       370         
pF1KB9 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNI
              370       380       390       400       410       420

     380       390       400       410       420       430         
pF1KB9 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAE
              430       440       450       460       470       480

     440       450       460       470       480       490         
pF1KB9 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLHVCDTAFETSKFFTDLRDGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK
              490       500       510       520       530       540

     500       510
pF1KB9 KSPEKNERHTC
       ::         
NP_001 KSPEKNERHTC
              550 




510 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 18:32:25 2016 done: Sun Nov  6 18:32:27 2016
 Total Scan time: 10.580 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]
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