GENSCAN 1.0	Date run:  8-Nov-116	Time: 16:35:50

Sequence gi568815596r:9390180_9655605 : 265426 bp : 43.44% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3303   3468  166  1  1  149   86    68 0.802  11.72
 1.02 Intr +   9122   9252  131  2  2   66   38    85 0.466   1.64
 1.03 Intr +  10563  10651   89  1  2   95   92    19 0.984   2.69
 1.04 Intr +  11095  11217  123  0  0   90   92   239 0.999  25.28
 1.05 Term +  13074  13148   75  2  0  110   38    78 0.991   2.84
 1.06 PlyA +  13473  13478    6                               1.05

 2.08 PlyA -  14540  14535    6                               1.05
 2.07 Term -  16726  16655   72  1  0   60   41    34 0.362  -6.19
 2.06 Intr -  17419  17270  150  1  0   85   85    72 0.711   6.96
 2.05 Intr -  22226  22090  137  0  2  113   98    96 0.999  13.39
 2.04 Intr -  24077  23999   79  2  1   89   88    31 0.570   2.32
 2.03 Intr -  29921  29811  111  2  0  100   66    51 0.474   4.68
 2.02 Intr -  33642  33569   74  1  2   98   60    49 0.115   2.23
 2.01 Init -  34505  34499    7  2  1   76   64     0 0.102  -2.53
 2.00 Prom -  40673  40634   40                              -5.66

 3.00 Prom +  41176  41215   40                              -7.26
 3.01 Init +  42351  42509  159  2  0   85   75   111 0.769   9.32
 3.02 Intr +  43692  43781   90  2  0   87   87    43 0.896   4.29
 3.03 Intr +  46032  46182  151  2  1   48   57    30 0.711  -4.36
 3.04 Intr +  50312  50487  176  0  2   54  113   153 0.740  14.06
 3.05 Intr +  51639  51797  159  2  0  101   86    41 0.976   5.38
 3.06 Intr +  53336  53482  147  1  0   88   37    50 0.537   0.33
 3.07 Intr +  58019  58171  153  1  0   41   93   148 0.952  10.87
 3.08 Intr +  62734  62842  109  0  1   99  100     1 0.996   2.26
 3.09 Intr +  65480  65578   99  0  0   92   89    78 0.988   8.38
 3.10 Intr +  66754  66848   95  2  2   76   63    39 0.810  -0.12
 3.11 Intr +  69352  69439   88  0  1   94  116    29 0.855   5.84
 3.12 Intr +  77528  77597   70  0  1  129  100     5 0.967   4.04
 3.13 Intr +  81164  81260   97  2  1  104   79    84 0.998   9.11
 3.14 Term +  82737  82838  102  2  0   87   53   178 0.999  12.48
 3.15 PlyA +  82895  82900    6                               1.05

 4.00 Prom +  83828  83867   40                             -11.92
 4.01 Init +  84388  84468   81  0  0   73   96   153 0.911  13.59
 4.02 Intr +  86660  86691   32  1  2   83   92    13 0.720  -1.87
 4.03 Intr +  88043  88191  149  2  2   76   93    55 0.974   4.68
 4.04 Intr +  91107  91268  162  1  0   16   92   161 0.943   9.25
 4.05 Intr +  94253  94371  119  0  2  105   96   137 0.997  16.38
 4.06 Term +  95964  96062   99  2  0   69   47    90 0.915   1.13
 4.07 PlyA +  98259  98264    6                               1.05

 5.17 PlyA -  98328  98323    6                               1.05
 5.16 Term - 100339  99998  342  1  0   84   28   350 0.877  23.11
 5.15 Intr - 100972 100922   51  1  0  116   84     8 0.750   2.30
 5.14 Intr - 102807 102719   89  1  2   56  103    10 0.864  -1.01
 5.13 Intr - 103646 103568   79  2  1  106   74    74 0.947   6.92
 5.12 Intr - 104588 104458  131  0  2   89   82    73 0.996   7.21
 5.11 Intr - 107069 106935  135  0  0  104   89   127 0.960  14.94
 5.10 Intr - 112097 111994  104  1  2  100   79    64 0.920   6.52
 5.09 Intr - 115186 114987  200  1  2   72   94   225 0.974  19.65
 5.08 Intr - 119952 119800  153  0  0   27   95   105 0.794   5.37
 5.07 Intr - 127810 127722   89  2  2   69   95    20 0.572   0.49
 5.06 Intr - 128068 127924  145  1  1   55  110    20 0.692   0.76
 5.05 Intr - 131137 131024  114  1  0    1   92   122 0.866   4.54
 5.04 Intr - 133159 133070   90  1  0   51   68   105 0.936   4.99
 5.03 Intr - 136085 135932  154  1  1   42   83   115 0.486   6.47
 5.02 Intr - 153106 152974  133  2  1   70   86    13 0.080  -1.00
 5.01 Init - 165426 165330   97  0  1   94   28   135 0.277   6.61
 5.00 Prom - 174144 174105   40                              -4.96

 6.10 PlyA - 175640 175635    6                               1.05
 6.09 Term - 195166 195107   60  1  0   92   35    56 0.600  -1.50
 6.08 Intr - 197330 197235   96  2  0   32   79   135 0.989   7.21
 6.07 Intr - 198149 197986  164  0  2   91  107    47 0.996   6.59
 6.06 Intr - 201336 201213  124  0  1   82  111   104 0.814  12.26
 6.05 Intr - 230582 230463  120  2  0  106   84    46 0.857   6.69
 6.04 Intr - 240355 239980  376  0  1  100  105   724 0.281  70.32
 6.03 Intr - 243465 243449   17  0  2  119   93     4 0.024  -1.66
 6.02 Intr - 249056 248955  102  2  0   91   53    52 0.027   2.37
 6.01 Intr - 259209 259004  206  1  2  100   64    59 0.045   3.62

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:9390180_9655605|GENSCAN_predicted_peptide_1|194_aa
XPLTPTPPPPVAKTPSVMEALSQPSKPAPPGISQIRPPPLPPQPPSRLPQKKPAPGSRRS
TGELKPLALVLSSGVDGSCVTPFADENADSPEPIYPGLPVDLSATEALGPLSNAMVLQPP
APMPRKSQATKLKPKRVKALYNCVADNPDELTFSEGDVIIVDGEEDQEWWIGHIDGDPGR
KGAFPVSFVHFIAD

>gi568815596r:9390180_9655605|GENSCAN_predicted_CDS_1|585_bp
natcccctgacccccacgccgcccccacccgttgccaagacgcccagcgtaatggaagcc
ttgagccagccgagcaagcctgccccgcctgggatctcacagatcaggcccccacctctg
cccccacagccgcccagccgcctcccgcagaagaagcctgcgccggggtccaggagatcc
accggggagctgaagccactggcactggtccttagctctggagttgacggatcttgtgtc
acaccttttgcagatgaaaatgctgactctccagaacccatttatccagggctgccagtg
gatctctctgcaacggaagctctgggtcctctgtccaatgctatggtcctgcagccccct
gcacccatgcctaggaagtcgcaggcaaccaagttgaagcctaagcgggtgaaagcgctc
tataactgtgtggctgacaaccccgatgagctcaccttctccgagggggatgtgatcatc
gtggacggggaggaggaccaggagtggtggattggccacattgatggagatcctggtcgc
aaaggcgcattcccggtgtcatttgtgcactttatcgctgactga

>gi568815596r:9390180_9655605|GENSCAN_predicted_peptide_2|209_aa
MTGVGSAAGRSPQQESQTSRKCEGEAGVRSFSEKHHPGQNERKLSVQTAVCGTFEDSQIV
FNSISVDSSLGGLSRSSTVASLDTDSTKSSGQSNNNSDTCAEFRIKYVGAIEKLKLSEGK
GLEGPLDLINYIDVAQDVLHRHALYLIIRMVCYDDGLGAGKSLLALKTTDASNEEYSLWV
YQCNSLEQAQAICKVLSTAFDSVLTSEKP

>gi568815596r:9390180_9655605|GENSCAN_predicted_CDS_2|630_bp
atgacaggggtcggatcagcagctggtcgctctcctcagcaggaatcgcagacatcccga
aagtgtgagggcgaagcgggggtgcgtagtttctctgaaaagcatcacccaggtcagaat
gaaaggaaactctctgtgcagaccgctgtatgtgggacctttgaagacagtcaaatagtg
ttcaattctatatctgtggattctagccttgggggtctttcacgatccagcactgtggcc
agcctcgacacagattccaccaaaagctcaggacaaagcaacaataattcagatacctgt
gcagaatttcgaataaaatatgttggtgccattgagaaactgaaactctccgagggaaaa
ggccttgaagggccattagacctgataaattatatagacgttgcccaggatgttttgcac
aggcatgctctctacttaataatccggatggtgtgttacgatgacggtctgggggcggga
aaaagcttactggctctgaagaccacagatgcaagcaatgaggaatacagcctgtgggtt
tatcagtgcaacagcctggaacaagcacaagccatttgcaaggttttatccaccgctttt
gactctgtattaacatctgagaaaccctga

>gi568815596r:9390180_9655605|GENSCAN_predicted_peptide_3|564_aa
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLCYQLQKLTGDVEEL
EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDDSILSVTVDGKTANLNLETRTVECEEGSE
DDESLREMVELAAQRLYEALTPVH

>gi568815596r:9390180_9655605|GENSCAN_predicted_CDS_3|1695_bp
atgctgtataccgagacagatttggaagaaagcatggacaaaattgaaactatcaacttt
catgaagttaaggaagttgcgggaatcaagttttggtgttaccatgcaggtcacgtccta
ggagccgccatgttcatgattgagatcgcaggcgtgaagcttttgtacactggtgatttc
tcaagacaagaagataggcacttaatggcagctgaaattcctaatattaagcctgatatt
cttatcattgaatctacttatgggacccatatccatgagaaacgtgaagagcgagaagca
agattctgtaacactgtccacgatattgtaaacagaggaggcaggggtctcattcctgtc
tttgctcttggaagggctcaggagctgctcttgattctagatgagtactggcagaatcac
ccagaactacatgacattccaatatactatgcatcatctttggccaagaagtgtatggca
gtgtaccagacatatgtaaatgccatgaatgacaaaatccgcaaacagatcaacatcaat
aatccctttgttttcaaacacattagtaacctcaagagcatggatcattttgatgacatt
ggtcccagtgttgtaatggcctccccaggcatgatgcaaagtggcttatccagagaatta
tttgaaagctggtgtactgataagaggaatggtgtcattatagcgggatactgtgtagaa
gggacacttgccaagcacatcatgtctgaacctgaagaaatcactactatgtctggacag
aagttaccactgaaaatgtctgttgattacatttctttctcagctcacacggattaccag
caaaccagtgaatttattcgtgctttgaaaccgcctcatgtgattttagtccatggagaa
cagaatgaaatggccagattgaaagcagcactgattcgagaatatgaagataacgatgaa
gttcacatagaggttcataatcctcggaatacagaagcagtgaccttaaacttcagagga
gaaaaactagccaaggttatgggatttttagcagacaaaaaaccagaacaaggccagcgg
gtctcaggaatacttgttaaaagaaactttaattatcacatactttctccttgcgacctg
tccaattatactgacctggccatgagcacggtgaagcagacccaagccattccatatact
ggtccctttaatttgctctgttaccagctgcagaaattgacaggtgatgtggaagaatta
gaaattcaagaaaaacctgctctgaaagtgttcaaaaatattactgtaatacaagaacca
ggcatggtggtattagaatggctggcaaacccttctaatgatatgtatgcagatacagta
acaactgtgatattggaagttcagtcaaatcccaaaataagaaaaggtgcagtacagaag
gtttctaaaaaattagaaatgcacgtttacagcaagaggttggagatcatgctccaggac
atatttggagaagactgtgtaagtgtaaaggatgactctattcttagcgtcacagtggac
gggaaaactgccaaccttaacttggagacacggactgtagaatgtgaagagggaagtgaa
gacgatgaatccctccgagaaatggtggagctggctgcacagagactgtacgaggccctg
acgccagttcactga

>gi568815596r:9390180_9655605|GENSCAN_predicted_peptide_4|213_aa
MALCEAAGCGSALLWPRLLLFGDSITQLLQATWMYTCRKCDVLNRGFSGYNTRWAKIILP
RLIRKGNSLDIPVAVTIFFGANDSALKDENPKQHIPLEEYAANLKSMVQYLKSVDIPENR
VILITPTPLCETAWEEQCIIQGCKLNRLNSVVGEYANACLQVAQDCGTDVLDLWTLMQDS
QGKWSPVGKSYYHVDAESPVTFGGPESLSRSGP

>gi568815596r:9390180_9655605|GENSCAN_predicted_CDS_4|642_bp
atggcgctgtgcgaggccgcgggctgcgggagtgccctgctctggcctcgcttgttgctc
ttcggggactccatcacccagttgctccaggccacctggatgtatacgtgcagaaaatgt
gatgttctgaatcgtggattttcaggttacaataccaggtgggccaaaattatccttcca
agattaatcaggaaaggaaacagtttggacatcccagtagcagttacaattttctttggg
gccaatgacagtgcactaaaagatgagaatcccaagcagcacattcccctggaggagtac
gctgcgaacctaaagagcatggtgcagtacctgaagtccgtggacatccctgagaatcga
gtcattctcatcacgccgaccccactttgtgaaacagcctgggaagaacagtgcatcata
caaggttgcaaactaaatcgcctgaactctgttgttggtgaatatgccaatgcgtgttta
caagtggcccaagactgtgggactgacgtacttgacctgtggaccctgatgcaggacagc
cagggaaaatggtcaccagtgggaaagtcatactaccacgtggatgccgagtcaccagtc
acctttggaggccctgagagcctaagcagatctggaccctag

>gi568815596r:9390180_9655605|GENSCAN_predicted_peptide_5|701_aa
MRQSLLFLTSVVPFVLAPRPPDDPGFGPHQRLEKLDSLLSDYDILSLSNIQQHSVRKRDL
QTSTHVETLLTFSALKSAYKFILELVHRVKRRADPDPMKNTCKLLVVADHRFYRYMGRGE
ESTTTNYLIELIDRVDDIYRNTSWDNAGFKGYGIQIEQIRILKSPQEVKPGEKHYNMAKS
YPNEEKDAWDVKMLLEQFSFDIAEEASKVCLAHLFTYQDFDMGTLGLAYVGSPRANSHGG
VCPKAYYSPVGKKNIYLNSGLTSTKNYGKTILTKEADLVTTHELGHNFGAEHDPDGLAEC
APNEDQGGKYVMYPIAVSGDHENNKMFSNCSKQSIYKTIESKAQECFQERSNKVCGNSRV
DEGEECDPGIMYLNNDTCCNSDCTLKEGVQCSDRNSPCCKNCQFETAQKKCQEAINATCK
GVSYCTGNSSECPPPGNAEDDTVCLDLGKCKDGKCIPFCEREQQLESCACNETDNSCKVC
CRDLSGRCVPYVDAEQKNLFLRKGKPCTVGFCDMNGKCEKRVQDVIERFWDFIDQLSINT
FGKFLADNIVGSVLVFSLIFWIPFSILVHCVDKKLDKQYESLSLFHPSNVEMLSSMDSAS
VRIIKPFPAPQTPGRLQPAPVIPSAPAAPKLDHQRMDTIQEDPSTDSHMDEDGFEKDPFP
NSSTAAKSFEDLTDHPVTRSEKAASFKLQRQNRVDSKETEC

>gi568815596r:9390180_9655605|GENSCAN_predicted_CDS_5|2106_bp
atgaggcagtctctcctattcctgaccagcgtggttcctttcgtgctggcgccgcgacct
ccggatgacccgggcttcggcccccaccagagactcgagaagcttgattctttgctctca
gactacgatattctctctttatctaatatccagcagcattcggtaagaaaaagagatcta
cagacttcaacacatgtagaaacactactaactttttcagctttgaaaagtgcatacaaa
ttcatattagagcttgttcatcgagtgaaaagaagagctgacccagatcccatgaagaac
acgtgtaaattattggtggtagcagatcatcgcttctacagatacatgggcagaggggaa
gagagtacaactacaaattacttaatagagctaattgacagagttgatgacatctatcgg
aacacttcatgggataatgcaggttttaaaggctatggaatacagatagagcagattcgc
attctcaagtctccacaagaggtaaaacctggtgaaaagcactacaacatggcaaaaagt
tacccaaatgaagaaaaggatgcttgggatgtgaagatgttgctagagcaatttagcttt
gatatagctgaggaagcatctaaagtttgcttggcacaccttttcacataccaagatttt
gatatgggaactcttggattagcttatgttggctctcccagagcaaacagccatggaggt
gtttgtccaaaggcttattatagcccagttgggaagaaaaatatctatttgaatagtggt
ttgacgagcacaaagaattatggtaaaaccatccttacaaaggaagctgacctggttaca
actcatgaattgggacataattttggagcagaacatgatccggatggtctagcagaatgt
gccccgaatgaggaccagggagggaaatatgtcatgtatcccatagctgtgagtggcgat
cacgagaacaataagatgttttcaaactgcagtaaacaatcaatctataagaccattgaa
agtaaggcccaggagtgttttcaagaacgcagcaataaagtttgtgggaactcgagggtg
gatgaaggagaagagtgtgatcctggcatcatgtatctgaacaacgacacctgctgcaac
agcgactgcacgttgaaggaaggtgtccagtgcagtgacaggaacagtccttgctgtaaa
aactgtcagtttgagactgcccagaagaagtgccaggaggcgattaatgctacttgcaaa
ggcgtgtcctactgcacaggtaatagcagtgagtgcccgcctccaggaaatgctgaagat
gacactgtttgcttggatcttggcaagtgtaaggatgggaaatgcatccctttctgcgag
agggaacagcagctggagtcctgtgcatgtaatgaaactgacaactcctgcaaggtgtgc
tgcagggacctttctggccgctgtgtgccctatgtcgatgctgaacaaaagaacttattt
ttgaggaaaggaaagccctgtacagtaggattttgtgacatgaatggcaaatgtgagaaa
cgagtacaggatgtaattgaacgattttgggatttcattgaccagctgagcatcaatact
tttggaaagtttttagcagacaacatcgttgggtctgtcctggttttctccttgatattt
tggattcctttcagcattcttgtccattgtgtggataagaaattggataaacagtatgaa
tctctgtctctgtttcaccccagtaacgtcgaaatgctgagcagcatggattctgcatcg
gttcgcattatcaaaccctttcctgcgccccagactccaggccgcctgcagcctgcccct
gtgatcccttcggcgccagcagctccaaaactggaccaccagagaatggacaccatccag
gaagaccccagcacagactcacatatggacgaggatgggtttgagaaggaccccttccca
aatagcagcacagctgccaagtcatttgaggatctcacggaccatccggtcaccagaagt
gaaaaggctgcctcctttaaactgcagcgtcagaatcgtgttgacagcaaagaaacagag
tgctaa

>gi568815596r:9390180_9655605|GENSCAN_predicted_peptide_6|421_aa
XSSSLLLSPGEGEEGQSSPEPHTPSQVIANIYHVFAKCQDNSKHLKGISSFYICRNPRRQ
VQFPDEDVQEVCVTVVAAGFRLNTFQQFVCCRILQSEAGHISLELLHTSSRGSSRCGSAL
ALALLALRPGPGPAPAMEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLL
SVAYKNVVGGRRSAWRVISSIEQKTDTSDKKLQLIKDYREKVESELRSICTTVLEYRFED
QENHRCDNEERRIVDIRHWVIKVPVNSWKPAKDLELLDKYLIANATNPESKVFYLKMKGD
YFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNN
PELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECDAAEGAE
N

>gi568815596r:9390180_9655605|GENSCAN_predicted_CDS_6|1266_bp
naaagctcttcactgctgctcagccctggagagggggaggaggggcaaagctcccccgaa
ccccacaccccctcgcaagtgattgctaatatttatcatgtgtttgccaagtgccaggac
aatagcaaacacctcaaaggcattagctcattttatatttgcaggaaccctaggaggcaa
gtccagtttccagatgaggacgttcaggaagtttgtgtgacggttgtagcagctggattc
cgtctgaacacattccagcaatttgtctgctgcaggatccttcagagtgaggctggccac
atcagtctggagcttcttcataccagctctcgaggctcctcccgctgcgggtcggcgctc
gccctcgctctcctcgccctccgccccggccccggccccgcgcccgccatggagaagact
gagctgatccagaaggccaagctggccgagcaggccgagcgctacgacgacatggccacc
tgcatgaaggcagtgaccgagcagggcgccgagctgtccaacgaggagcgcaacctgctc
tccgtggcctacaagaacgtggtcgggggccgcaggtccgcctggagggtcatctctagc
atcgagcagaagaccgacacctccgacaagaagttgcagctgattaaggactatcgggag
aaagtggagtccgagctgagatccatctgcaccacggtgctggaatataggtttgaagac
caggaaaatcacagatgtgataatgaagaaaggagaatagttgatattagacattgggta
ataaaagtccctgttaattcctggaaaccagctaaagatctggaattgttggataaatat
ttaatagccaatgcaactaatccagagagtaaggtcttctatctgaaaatgaagggtgat
tacttccggtaccttgctgaagttgcgtgtggtgatgatcgaaaacaaacgatagataat
tcccaaggagcttaccaagaggcatttgatataagcaagaaagagatgcaacccacacac
ccaatccgcctggggcttgctcttaacttttctgtattttactatgagattcttaataac
ccagagcttgcctgcacgctggctaaaacggcttttgatgaggccattgctgaacttgat
acactgaatgaagactcatacaaagacagcaccctcatcatgcagttgcttagagacaac
ctaacactttggacatcagacagtgcaggagaagaatgtgatgcggcagaaggggctgaa
aactaa