Result of FASTA (ccds) for pF1KE3023
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3023, 138 aa
  1>>>pF1KE3023     138 - 138 aa - 138 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1515+/-0.000772; mu= 12.5517+/- 0.047
 mean_var=69.3103+/-14.017, 0's: 0 Z-trim(108.6): 18  B-trim: 52 in 1/49
 Lambda= 0.154055
 statistics sampled from 10427 (10439) to 10427 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.312), width:  16
 Scan time:  0.690

The best scores are:                                      opt bits E(33420)
CCDS880.1 TSHB gene_id:7252|Hs109|chr1             ( 138)  977 225.4 8.7e-60
CCDS7868.1 FSHB gene_id:2488|Hs109|chr11           ( 129)  378 92.3 9.8e-20
CCDS12748.1 LHB gene_id:3972|Hs109|chr19           ( 141)  355 87.2 3.6e-18
CCDS12751.2 CGB1 gene_id:114335|Hs109|chr19        ( 155)  337 83.2 6.3e-17
CCDS12750.2 CGB2 gene_id:114336|Hs109|chr19        ( 163)  337 83.2 6.6e-17
CCDS12753.1 CGB8 gene_id:94115|Hs109|chr19         ( 165)  337 83.3 6.6e-17
CCDS12749.1 CGB3 gene_id:1082|Hs109|chr19          ( 165)  337 83.3 6.6e-17
CCDS12752.1 CGB5 gene_id:93659|Hs109|chr19         ( 165)  337 83.3 6.6e-17
CCDS33071.1 CGB7 gene_id:94027|Hs109|chr19         ( 165)  336 83.0 7.7e-17


>>CCDS880.1 TSHB gene_id:7252|Hs109|chr1                  (138 aa)
 initn: 977 init1: 977 opt: 977  Z-score: 1187.0  bits: 225.4 E(33420): 8.7e-60
Smith-Waterman score: 977; 99.3% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KE3 MTALFLMSMLFGLACGQAMSFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKL
       :::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MTALFLMSMLFGLTCGQAMSFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDINGKL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 FLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 FLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHEAI
               70        80        90       100       110       120

              130        
pF1KE3 KTNYCTKPQKSYLVGFSV
       ::::::::::::::::::
CCDS88 KTNYCTKPQKSYLVGFSV
              130        

>>CCDS7868.1 FSHB gene_id:2488|Hs109|chr11                (129 aa)
 initn: 402 init1: 224 opt: 378  Z-score: 468.0  bits: 92.3 E(33420): 9.8e-20
Smith-Waterman score: 378; 40.2% identity (72.1% similar) in 122 aa overlap (7-126:4-123)

               10          20        30        40        50        
pF1KE3 MTALFLMSMLFGLACGQAM--SFCIPTEYTMHIERRECAYCLTINTTICAGYCMTRDING
             ....: . : .:.  . :  :. :. ::..:: .:..:::: :::::.:::.  
CCDS78    MKTLQFFFLFCCWKAICCNSCELTNITIAIEKEECRFCISINTTWCAGYCYTRDLVY
                  10        20        30        40        50       

       60        70        80        90       100       110        
pF1KE3 KLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYSDCIHE
       :   :     : .::.....:.::..:::  :.   ..:::: .:.::::..: .::  .
CCDS78 KD--PARPKIQKTCTFKELVYETVRVPGCAHHADSLYTYPVATQCHCGKCDSDSTDCTVR
          60        70        80        90       100       110     

      120       130        
pF1KE3 AIKTNYCTKPQKSYLVGFSV
       ..  .::.            
CCDS78 GLGPSYCSFGEMKE      
         120               

>>CCDS12748.1 LHB gene_id:3972|Hs109|chr19                (141 aa)
 initn: 369 init1: 225 opt: 355  Z-score: 439.8  bits: 87.2 E(33420): 3.6e-18
Smith-Waterman score: 355; 41.7% identity (61.4% similar) in 132 aa overlap (4-134:10-139)

                     10        20         30        40        50   
pF1KE3       MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYCMT
                :.:.::  . :  . .  .: : .  . .:.. :  :.:.::::::::: :
CCDS12 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPT
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE3 RDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYS
            .  ::   : : ::::::  ......::::  : :  :.::::::.:: :  . :
CCDS12 MMRVLQAVLP--PLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTS
               70          80        90       100       110        

           120       130        
pF1KE3 DCIHEAIKTNYCTKPQKSYLVGFSV
       ::     .   : .:: : :.    
CCDS12 DCGGPKDHPLTCDHPQLSGLLFL  
      120       130       140   

>>CCDS12751.2 CGB1 gene_id:114335|Hs109|chr19             (155 aa)
 initn: 321 init1: 197 opt: 337  Z-score: 417.6  bits: 83.2 E(33420): 6.3e-17
Smith-Waterman score: 337; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:8-132)

                   10        20         30        40        50     
pF1KE3     MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--MT
              :.:.::    :  . .   : : . :. .:.. :  :.:.:::::::::  ::
CCDS12 MSKRLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE3 RDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYS
       : ..:   ::  :: : ::.:::  ......::::  : :  :: :::::.:. :  . .
CCDS12 RVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTT
                   70        80        90       100       110      

           120       130                      
pF1KE3 DCIHEAIKTNYCTKPQKSYLVGFSV              
       ::     .   :  :.                       
CCDS12 DCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGP
        120       130       140       150     

>>CCDS12750.2 CGB2 gene_id:114336|Hs109|chr19             (163 aa)
 initn: 321 init1: 197 opt: 337  Z-score: 417.3  bits: 83.2 E(33420): 6.6e-17
Smith-Waterman score: 337; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:8-132)

                   10        20         30        40        50     
pF1KE3     MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--MT
              :.:.::    :  . .   : : . :. .:.. :  :.:.:::::::::  ::
CCDS12 MSKGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPTMT
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE3 RDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTDYS
       : ..:   ::  :: : ::.:::  ......::::  : :  :: :::::.:. :  . .
CCDS12 RVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRSTT
                   70        80        90       100       110      

           120       130                              
pF1KE3 DCIHEAIKTNYCTKPQKSYLVGFSV                      
       ::     .   :  :.                               
CCDS12 DCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
        120       130       140       150       160   

>>CCDS12753.1 CGB8 gene_id:94115|Hs109|chr19              (165 aa)
 initn: 321 init1: 197 opt: 337  Z-score: 417.2  bits: 83.3 E(33420): 6.6e-17
Smith-Waterman score: 337; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:10-134)

                     10        20         30        40        50   
pF1KE3       MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--
                :.:.::    :  . .   : : . :. .:.. :  :.:.:::::::::  
CCDS12 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KE3 MTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTD
       ::: ..:   ::  :: : ::.:::  ......::::  : :  :: :::::.:. :  .
CCDS12 MTRVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRS
                 70          80        90       100       110      

             120       130                              
pF1KE3 YSDCIHEAIKTNYCTKPQKSYLVGFSV                      
        .::     .   :  :.                               
CCDS12 TTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
        120       130       140       150       160     

>>CCDS12749.1 CGB3 gene_id:1082|Hs109|chr19               (165 aa)
 initn: 321 init1: 197 opt: 337  Z-score: 417.2  bits: 83.3 E(33420): 6.6e-17
Smith-Waterman score: 337; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:10-134)

                     10        20         30        40        50   
pF1KE3       MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--
                :.:.::    :  . .   : : . :. .:.. :  :.:.:::::::::  
CCDS12 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KE3 MTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTD
       ::: ..:   ::  :: : ::.:::  ......::::  : :  :: :::::.:. :  .
CCDS12 MTRVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRS
                 70          80        90       100       110      

             120       130                              
pF1KE3 YSDCIHEAIKTNYCTKPQKSYLVGFSV                      
        .::     .   :  :.                               
CCDS12 TTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
        120       130       140       150       160     

>>CCDS12752.1 CGB5 gene_id:93659|Hs109|chr19              (165 aa)
 initn: 321 init1: 197 opt: 337  Z-score: 417.2  bits: 83.3 E(33420): 6.6e-17
Smith-Waterman score: 337; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:10-134)

                     10        20         30        40        50   
pF1KE3       MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--
                :.:.::    :  . .   : : . :. .:.. :  :.:.:::::::::  
CCDS12 MEMFQGLLLLLLLSMGGTWASKEPLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KE3 MTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTD
       ::: ..:   ::  :: : ::.:::  ......::::  : :  :: :::::.:. :  .
CCDS12 MTRVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRS
                 70          80        90       100       110      

             120       130                              
pF1KE3 YSDCIHEAIKTNYCTKPQKSYLVGFSV                      
        .::     .   :  :.                               
CCDS12 TTDCGGPKDHPLTCDDPRFQDSSSSKAPPPSLPSPSRLPGPSDTPILPQ
        120       130       140       150       160     

>>CCDS33071.1 CGB7 gene_id:94027|Hs109|chr19              (165 aa)
 initn: 321 init1: 197 opt: 336  Z-score: 416.0  bits: 83.0 E(33420): 7.7e-17
Smith-Waterman score: 336; 41.9% identity (62.0% similar) in 129 aa overlap (4-129:10-134)

                     10        20         30        40        50   
pF1KE3       MTALFLMSMLFGLACGQAMS-FCIPTEYTMHIERRECAYCLTINTTICAGYC--
                :.:.::    :  . .   : : . :. .:.. :  :.:.:::::::::  
CCDS33 MEMFQGLLLLLLLSMGGTWASREMLRPRCRPINATLAVEKEGCPVCITVNTTICAGYCPT
               10        20        30        40        50        60

              60        70        80        90       100       110 
pF1KE3 MTRDINGKLFLPKYALSQDVCTYRDFIYRTVEIPGCPLHVAPYFSYPVALSCKCGKCNTD
       ::: ..:   ::  :: : ::.:::  ......::::  : :  :: :::::.:. :  .
CCDS33 MTRVLQG--VLP--ALPQVVCNYRDVRFESIRLPGCPRGVNPVVSYAVALSCQCALCRRS
                 70          80        90       100       110      

             120       130                              
pF1KE3 YSDCIHEAIKTNYCTKPQKSYLVGFSV                      
        .::     .   :  :.                               
CCDS33 TTDCGGPKDHPLTCDDPRFQASSSSKAPPPSLPSPSRLPGPSDTPILPQ
        120       130       140       150       160     




138 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Jun 20 10:38:23 2019 done: Thu Jun 20 10:38:23 2019
 Total Scan time:  0.690 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
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