GENSCAN 1.0	Date run:  5-Nov-116	Time: 23:28:29

Sequence gi568815597r:39974064_40197238 : 223175 bp : 42.33% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    917    985   69  1  0   62   62   100 0.644   5.90
 1.02 Term +   7926   8084  159  2  0   80   44    82 0.088  -0.04
 1.03 PlyA +   8442   8447    6                               1.05

 2.04 PlyA -   8478   8473    6                               1.05
 2.03 Term -  40994  40891  104  0  2   92   49    91 0.785   3.06
 2.02 Intr -  52499  52340  160  2  1  101   78   115 0.532  10.44
 2.01 Init -  61228  61223    6  1  0   70  102    10 0.184   0.96
 2.00 Prom -  63322  63283   40                              -7.65

 3.00 Prom +  64809  64848   40                              -9.25
 3.01 Init +  66104  66404  301  1  1   67   77   157 0.239   9.96
 3.02 Intr +  66641  66738   98  0  2    9   78    81 0.163  -1.99
 3.03 Intr +  68367  68533  167  2  2   -7   87   177 0.246   5.94
 3.04 Intr +  85271  85395  125  2  2   58  121   106 0.516  10.21
 3.05 Intr +  86004  86107  104  1  2   73   75   124 0.835   8.57
 3.06 Intr +  87672  87749   78  2  0   91  100    79 0.994   8.23
 3.07 Intr +  90164  90307  144  1  0   99   89   118 0.997  12.56
 3.08 Intr +  90411  90496   86  2  2  101   75    88 0.943   6.50
 3.09 Intr +  92152  92257  106  1  1   82   61    61 0.852   2.10
 3.10 Intr +  93477  93654  178  2  1   88  101    73 0.709   7.17
 3.11 Intr +  95507  95811  305  0  2   -9   89   270 0.385  12.78
 3.12 Intr +  96096  96219  124  2  1   60   95    71 0.999   4.24
 3.13 Intr +  96367  96449   83  2  2  114   93    99 0.999  11.44
 3.14 Intr +  96773  96916  144  1  0  124   78   139 0.999  16.06
 3.15 Term +  97387  97470   84  0  0  130   47    98 0.999   6.57
 3.16 PlyA +  98526  98531    6                               1.05

 4.10 PlyA -  98667  98662    6                               1.05
 4.09 Term - 100120  99998  123  1  0  115   47   133 0.981   9.30
 4.08 Intr - 102850 102779   72  1  0  101   93     3 0.619   0.78
 4.07 Intr - 104595 104497   99  0  0   95   78   167 0.718  15.79
 4.06 Intr - 106424 106334   91  1  1  113  102    87 0.998  11.68
 4.05 Intr - 115449 115347  103  1  1   31   92   149 0.770   7.91
 4.04 Intr - 117336 117266   71  2  2   83   88     5 0.574  -2.09
 4.03 Intr - 118109 117982  128  2  2  117   46    40 0.632   1.26
 4.02 Intr - 118444 118335  110  2  2   70   94    39 0.625   1.78
 4.01 Init - 123175 123052  124  1  1  106   92   170 0.979  17.58
 4.00 Prom - 138344 138305   40                              -3.35

 5.04 PlyA - 142723 142718    6                               1.05
 5.03 Term - 147089 146975  115  1  1   60   48    76 0.265  -2.14
 5.02 Intr - 149416 149354   63  0  0  120   76    42 0.528   3.11
 5.01 Init - 151579 151521   59  1  2   72  116    28 0.901   4.83
 5.00 Prom - 158511 158472   40                              -6.15

 6.04 PlyA - 158545 158540    6                               1.05
 6.03 Term - 159349 159096  254  2  2   40   38   331 0.664  18.12
 6.02 Intr - 160875 160699  177  1  0    2    4   260 0.672   7.97
 6.01 Init - 173444 173393   52  2  1   53   82    32 0.091   0.48
 6.00 Prom - 173489 173450   40                              -5.45

 7.00 Prom + 178932 178971   40                              -6.15
 7.01 Init + 187337 187573  237  1  0  101   94   290 0.050  26.96
 7.02 Intr + 214992 215146  155  2  2   87   93   125 0.889  10.85
 7.03 Intr + 216709 216790   82  1  1   64  109    31 0.467   1.52
 7.04 Intr + 221569 221701  133  0  1   87  115    23 0.120   4.20

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term - 187593 187158  436  2  1   96   43   357 0.803  25.77
S.002 Init - 193194 193177   18  0  0   78  116    43 0.860   4.94


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:39974064_40197238|GENSCAN_predicted_peptide_1|75_aa
MSGIDEYKTSGGSGDRKGLIWQLGSDSRASPPAIYGFQQMGLAISVNTKGQLIVWEGLFY
SLLFLKGVAEAEDET

>gi568815597r:39974064_40197238|GENSCAN_predicted_CDS_1|228_bp
atgagtggtattgatgagtacaagacgagtggaggcagtggagatagaaaaggactgatt
tggcagctgggctcagactccagagctagtcctccagcaatctatggctttcagcagatg
ggtttggccatttctgttaacacaaagggacaactcatagtgtgggaggggctgttctac
tccttgctgttccttaaaggagtagcagaggcagaggacgagacctag

>gi568815597r:39974064_40197238|GENSCAN_predicted_peptide_2|89_aa
MKEERPVRAVEELLSNDVGQVDLGSARDGLCDQGVDCVHNVLHPPSQRESAVRCRDNYGR
VPEIWPMESWTVLHALSPSVATLNVVCSR

>gi568815597r:39974064_40197238|GENSCAN_predicted_CDS_2|270_bp
atgaaggaagagaggcctgtgagagctgtagaggaacttctctccaatgatgtggggcag
gtggatcttggcagtgcaagggatgggctatgtgaccaaggggtggactgtgtgcacaat
gtcttacatccaccttcacaaagagaatctgctgtgaggtgtagagataactatggccgt
gtgcctgagatctggccaatggaatcgtggacagttctccatgctctttctccttctgtg
gcaactctgaatgtcgtgtgttcaagatga

>gi568815597r:39974064_40197238|GENSCAN_predicted_peptide_3|708_aa
MSRLIAFPRHKRGNRGMHAQRQAERGLDHHRELTAARIPALRESWPPVVPRPFTDCSLKE
PASAIETKLTEELVTLLFFPERSLARDFCPSWARASGAIPVRARKWVARRLLGGSCRKRR
AADRSPEVRRNSEGIRKRDFQAETTTGARTWRTGQLKDHDEFSVTGILVMAGEVEEVRCG
QVSHMWRTFRWSIMADMQNLVERLERAVGRLEAVSHTSDMHRGYADSPSKAGAAPYVQAF
DSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAENKLSDLLAP
ISEQIKEVITFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNR
VLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEFHTTGLAWSKTGPVAKELSGLPSGPSAG
SCPPPPPPCPPPPPVSTISCSYESASRSSLFAQINQGESITHENISKALVLALNFLLRMF
NMTIAAQRSGMKDRNKVAVVLTALKHVSDDMKTHKNPALKAQSGPVRSGPKPFSAPKPQT
SPSPKRATKKEPAVLELEGKKWRVENQENVSNLVIEDTELKQVAYIYKCVNTTLQIKGKI
NSITVDNCKKLGLVFDDVVGIVEIINSKDVKVQVMGKVPTISINKTDGCHAYLSKNSLDC
EIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG

>gi568815597r:39974064_40197238|GENSCAN_predicted_CDS_3|2127_bp
atgtccagactaattgccttcccacgtcacaaacggggaaaccgaggtatgcacgcccag
agacaggcggagcgtggcctcgatcaccaccgagagctgacggccgcccggattcccgcc
ctcagagaatcctggcccccagtcgttccaagaccctttacggactgcagcttaaaggaa
ccggcctctgccattgagaccaaactgacagaggaactggtcactcttctgttctttcca
gagaggagcttagccagggacttctgcccttcctgggcccgggcctcgggggcgattccg
gtgagggcccggaagtgggtcgcgcggagattgctgggcggttcttgccggaagcggaga
gcggctgatcgcagtccggaggtgaggcggaactctgagggaatccggaaaagggatttc
caggcagagactactacaggtgcaaggacctggagaaccggacagctgaaagaccatgac
gagttcagtgtgactggaattctagtaatggctggggaagtggaggaagtgagatgtggt
caggtcagtcatatgtggaggacattcaggtggtccattatggctgacatgcaaaatctg
gtagaaagattggagagggcagtgggccgcctggaggcagtatctcatacctctgacatg
caccgtgggtatgcagacagtccttcaaaagcaggagcagctccatatgtgcaggcattt
gactcgctgcttgctggtcctgtggcagagtacttgaagatcagtaaagagattggggga
gacgtgcagaaacatgcggagatggtccacacaggtttgaagttggagcgagctctgttg
gttacagcttctcagtgtcaacagccagcagaaaataagctttccgatttgttggcaccc
atctcagagcagatcaaagaagtgataacctttcgggagaagaaccgaggcagcaagttg
tttaatcacctgtcagctgtcagcgaaagtatccaggccctgggctgggtggctatggct
cccaagcctggcccttatgtgaaagaaatgaatgatgccgccatgttttatacaaaccga
gtcctcaaagagtacaaagatgtggataagaagcatgtagactgggtcaaagcttattta
agtatatggacagagctgcaggcttacattaaggagttccataccaccggactggcctgg
agcaaaacggggcctgtggcaaaagaactgagcggactgccatctggaccctctgccgga
tcatgtcctcctccccctccaccatgcccccctcctcccccagtctctaccatttcatgc
tcatatgagtctgcttcccgctcatcactgttcgcgcagattaatcagggggagagcatt
acacatgagaacatctcaaaggctctggttttggctttgaattttctgttaaggatgttt
aacatgacgatagcagctcaaaggtctggtatgaaggacaggaacaaggtagctgttgtt
cttacagccctgaaacatgtatctgatgacatgaagactcacaagaaccctgccctgaag
gctcagagtggtccagtacgcagtggccccaaaccattctctgcacctaaaccccaaacc
agcccatcccccaaacgagccacaaagaaggagccagctgtacttgaactggagggcaag
aagtggagagtggaaaatcaggaaaatgtttccaacctggtgattgaggacacagagctg
aaacaggtggcttacatatacaagtgtgtcaacacgacattgcaaatcaagggcaaaatt
aactccattacagtagataactgtaagaaacttggcctggtattcgatgacgtggtgggc
attgtggagataatcaacagtaaggatgtcaaagttcaggtaatgggtaaagtgccaacc
atatccatcaacaaaacagatggctgccatgcttacctgagcaagaattccctggattgt
gaaatagtcagtgccaaatcttccgagatgaatgtcctcattcctacagaaggcggtgac
tttaatgaattcccagttcctgagcagttcaagaccctatggaacgggcagaagttggtc
accacagtgacagaaattgctggataa

>gi568815597r:39974064_40197238|GENSCAN_predicted_peptide_4|306_aa
MASPGCLWLLAVALLPWTCASRALQHLDPPAPLPLVIWHGMGDSCCNPLSMGAIKKMVEK
KIPGIYVLSLEIGKTLMEDVENSFFLNVNSQVTTVCQALAKDPKLQQGYNAMGFSQGGQF
LRAVAQRCPSPPMINLISVGGQHQGVFGLPRCPGESSHICDFIRKTLNAGAYSKVVQERL
VQAEYWHDPIKEDVYRNHSIFLADINQERGINESYKKNLMALKKFVMVKFLNDSIVDPVD
SEWFGFYRSGQAKETIPLQETSLYTQDRLGLKEMDNAGQLVFLATEGDHLQLSEEWFYAH
IIPFLG

>gi568815597r:39974064_40197238|GENSCAN_predicted_CDS_4|921_bp
atggcgtcgcccggctgcctgtggctcttggctgtggctctcctgccatggacctgcgct
tctcgggcgctgcagcatctggacccgccggcgccgctgccgttggtgatctggcatggg
atgggagacagctgttgcaatcccttaagcatgggtgctattaaaaaaatggtggagaag
aaaatacctggaatttacgtcttatctttagagattgggaagaccctgatggaggacgtg
gagaacagcttcttcttgaatgtcaattcccaagtaacaacagtgtgtcaggcacttgct
aaggatcctaaattgcagcaaggctacaatgctatgggattctcccagggaggccaattt
ctgagggcagtggctcagagatgcccttcacctcccatgatcaatctgatctcggttggg
ggacaacatcaaggtgtttttggactccctcgatgcccaggagagagctctcacatctgt
gacttcatccgaaaaacactgaatgctggggcgtactccaaagttgttcaggaacgcctc
gtgcaagccgaatactggcatgaccccataaaggaggatgtgtatcgcaaccacagcatc
ttcttggcagatataaatcaggagcggggtatcaatgagtcctacaagaaaaacctgatg
gccctgaagaagtttgtgatggtgaaattcctcaatgattccattgtggaccctgtagat
tcggagtggtttggattttacagaagtggccaagccaaggaaaccattcccttacaggag
acctccctgtacacacaggaccgcctggggctaaaggaaatggacaatgcaggacagcta
gtgtttctggctacagaaggggaccatcttcagttgtctgaagaatggttttatgcccac
atcataccattccttggatga

>gi568815597r:39974064_40197238|GENSCAN_predicted_peptide_5|78_aa
MYLLGMFVPKHSKHQDLTRRARLSQTELSEILYEGIDFKLLNVLKKRDLLDLHLDVPKTK
AKSMNDSLLATSDPNVRH

>gi568815597r:39974064_40197238|GENSCAN_predicted_CDS_5|237_bp
atgtatttgcttggaatgtttgttccaaaacattccaagcatcaagatctcacaagaagg
gcacgtctgtcacaaacagaactttcagaaatcctttatgaaggtatagacttcaaactc
ctcaatgttttgaagaaaagggatctccttgatcttcatcttgatgttcctaagacaaaa
gccaaatcaatgaatgactcattgctggccacatctgacccaaatgttagacactga

>gi568815597r:39974064_40197238|GENSCAN_predicted_peptide_6|160_aa
MRAAQERSAPMIQLPPTAWVTEQDPVEEEKKEEKETEKEKGKEEEEEEEDEETYYEIQVI
LSMRKKKRRRRRRRRPSHEASVGSLGDKGSHNLKAPKAEGPEQGGSVLVVLVEANEDMVG
AQLLLGELLENCKAILAPLGQRTTRNLRCRGCRRSARLAS

>gi568815597r:39974064_40197238|GENSCAN_predicted_CDS_6|483_bp
atgagagcagcacaggaaagatctgcccccatgattcagttacctcccacagcctgggtg
acagaacaagaccctgttgaagaagaaaagaaggaggagaaggagacagagaaggagaag
gggaaagaggaggaggaggaagaggaggatgaggagacctactatgagattcaagtgatt
cttagtatgaggaagaagaagaggaggaggaggaggaggaggagacctagccatgaagca
agtgtcgggtctcttggggacaaggggtctcacaatctcaaagccccaaaagctgaaggt
ccggagcaaggcggctctgtcctcgtggttcttgtggaagcaaatgaagacatggtcggc
gctcagctgctcctcggcgaactgctggagaactgcaaagctatcctcgctcccctgggg
cagcgcaccaccaggaatctccgatgcagaggctgccgccgctcagcacggctcgccagt
taa

>gi568815597r:39974064_40197238|GENSCAN_predicted_peptide_7|203_aa
MADGKGDAAAVAGAGAEAPAVAGAGDGVETESMVRGHRPVSPAPGASGLRPCLWQLETEL
REQEVSEVSSLNYCRSFCQTLLQYASNKNASEHIVYLLEVYRLAIQSFASARPYLTTECE
DVLLVLGRLVLSCFELLLSVSESELPCEVWLPFLQSLQESHDALLEFGNNNLQILVHVTK
EGVWKNPVLLKILSQQPVETEEX

>gi568815597r:39974064_40197238|GENSCAN_predicted_CDS_7|609_bp
atggcggacggaaagggagacgccgccgctgtcgccggggctggggctgaggctccggcg
gtagcgggagccggagatggagtcgagactgagtccatggttcggggtcatcgccccgta
tctccagcgccgggagcctcgggactgcggccgtgtctgtggcagctggagacagagctg
agggagcaagaggtgtcggaggtctcatctttgaactactgccggagcttctgccagacc
ttattgcaatatgcaagcaacaagaatgcatcagaacatattgtgtatcttctggaggta
tatcgacttgccatccaaagctttgccagtgcacgtccatacttaactactgaatgtgaa
gatgtcctcttagtgcttggcagattagtactgagttgtttcgaattactgctttcagtg
tctgaaagtgaactgccatgtgaagtctggctaccattccttcagtctctacaggagtca
catgatgcattattggaatttgggaataataacctacaaatattggttcatgttaccaag
gaaggggtgtggaaaaacccagttcttcttaaaattctgtctcaacagccagtagaaacg
gaggaagnn