GENSCAN 1.0	Date run:  6-Nov-116	Time: 19:25:10

Sequence gi568815597r:30613585_30823551 : 209967 bp : 51.46% C+G : Isochore 3 (51 - 57 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3337   3396   60  0  0   96   78    -9 0.318   0.12
 1.02 Intr +   3880   3954   75  0  0   33   77    74 0.254   1.01
 1.03 Intr +   5787   5886  100  2  1   74   78    29 0.407   0.68
 1.04 Term +   9821   9873   53  0  2   94   48    76 0.599   2.08
 1.05 PlyA +  10505  10510    6                               1.05

 2.00 Prom +  13469  13508   40                              -2.71
 2.01 Init +  20218  20313   96  0  0   82  103    80 0.701   7.20
 2.02 Intr +  22218  22318  101  2  2  128   80     3 0.436   2.91
 2.03 Intr +  24501  24599   99  0  0   86   89     9 0.245   0.52
 2.04 Intr +  34629  34756  128  0  2   44   79    83 0.749   3.83
 2.05 Term +  35649  35767  119  1  2   50   52    75 0.100  -0.89
 2.06 PlyA +  36445  36450    6                               1.05

 3.07 PlyA -  37317  37312    6                               1.05
 3.06 Term -  42215  41604  612  2  0  -23   55  1275 0.895 108.00
 3.05 Intr -  43129  43084   46  0  1   77  105     5 0.126  -0.00
 3.04 Intr -  48236  48160   77  2  2  118   24    67 0.024   2.11
 3.03 Intr -  48910  48855   56  2  2  126   81   -16 0.147   0.69
 3.02 Intr -  50178  50120   59  2  2  105   48    43 0.067   1.02
 3.01 Init -  50975  50860  116  2  2   73   72    48 0.270   1.43
 3.00 Prom -  55237  55198   40                              -2.21

 4.00 Prom +  60083  60122   40                              -3.11
 4.01 Init +  62615  62624   10  1  1   51  101     3 0.350  -1.60
 4.02 Intr +  65290  65362   73  2  1   87  100    30 0.848   3.06
 4.03 Intr +  65587  65692  106  1  1   83   45   107 0.813   6.62
 4.04 Intr +  66879  66978  100  2  1   77   67    34 0.669   0.38
 4.05 Term +  69180  69340  161  1  2   72   49   125 0.853   5.42
 4.06 PlyA +  73073  73078    6                              -0.45

 5.11 PlyA -  73357  73352    6                               1.05
 5.10 Term -  79088  78874  215  0  2  128   36    91 0.070   5.62
 5.09 Intr -  83133  83084   50  2  2  157   94   -15 0.105   4.81
 5.08 Intr -  98206  98009  198  0  0  105   80    24 0.053   2.29
 5.07 Intr - 101422 101332   91  2  1   -5   91    62 0.051  -3.25
 5.06 Intr - 101725 101573  153  2  0  115   92   285 0.794  32.16
 5.05 Intr - 102741 102325  417  1  0  112   86   651 0.995  61.87
 5.04 Intr - 103331 103206  126  0  0   76   61   238 0.888  21.06
 5.03 Intr - 105439 105151  289  1  1   60   62   635 0.896  55.46
 5.02 Intr - 108167 107821  347  0  2   94  102   641 0.975  61.77
 5.01 Init - 109967 109874   94  2  1   61   78   170 0.716  11.80
 5.00 Prom - 110866 110827   40                              -8.68

 6.00 Prom + 111466 111505   40                             -10.67
 6.01 Init + 112211 112467  257  1  2   67   93   208 0.936  15.90
 6.02 Term + 115886 115997  112  2  1   95   41    40 0.221  -1.67
 6.03 PlyA + 117938 117943    6                               1.05

 7.20 PlyA - 118905 118900    6                               1.05
 7.19 Term - 120333 120244   90  0  0  146   46    85 0.609   8.12
 7.18 Intr - 121681 121589   93  1  0   62  113   104 0.746  10.96
 7.17 Intr - 124115 124020   96  2  0   63  113   118 0.958  12.51
 7.16 Intr - 125478 125356  123  0  0  119  101   215 0.999  27.19
 7.15 Intr - 126353 126225  129  2  0   77   68   189 0.922  17.20
 7.14 Intr - 128132 128056   77  0  2  124  100   115 0.992  16.03
 7.13 Intr - 128965 128872   94  1  1  116   86   110 0.726  13.64
 7.12 Intr - 130591 130538   54  1  0   55   87    58 0.081   2.06
 7.11 Intr - 134917 134891   27  1  0  111   94   -14 0.247   0.30
 7.10 Intr - 144188 144075  114  2  0   97   89   180 0.444  20.15
 7.09 Intr - 146902 146821   82  0  1   43   75    38 0.014  -1.86
 7.08 Intr - 156122 156032   91  0  1   64   80    85 0.041   4.85
 7.07 Intr - 156280 156233   48  2  0  107   76    18 0.032   1.64
 7.06 Intr - 160870 160757  114  2  0   72   45    55 0.006   0.52
 7.05 Intr - 169630 169517  114  2  0   93    4    93 0.249   2.32
 7.04 Intr - 173286 172889  398  2  2   66   61   105 0.140   0.39
 7.03 Intr - 176046 175959   88  1  1  102  121    49 0.659   9.13
 7.02 Intr - 187723 187667   57  2  0   62   94    74 0.012   4.75
 7.01 Init - 196661 196553  109  2  1   85   91    83 0.699   8.64
 7.00 Prom - 196814 196775   40                              -4.61

 8.00 Prom + 198912 198951   40                              -3.61
 8.01 Init + 200256 200268   13  2  1   81   86    -2 0.781  -0.92
 8.02 Intr + 200659 200771  113  2  2   94  121    42 0.791   8.70
 8.03 Term + 204043 204105   63  0  0   44   48   121 0.851   1.88
 8.04 PlyA + 204873 204878    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  16155  16037  119  0  2   77   64   150 0.972   9.16
S.002 Init +  79113  79354  242  2  2   49   81   184 0.891  11.13
S.003 Init - 155801 155695  107  2  2   64   64   124 0.800   5.46


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:30613585_30823551|GENSCAN_predicted_peptide_1|95_aa
MRTSWVVSPGSGSHTCRFPEYRRHLSEEINKDKSSDCIENITDDMTSPFLDYTLGKQRET
EITGKVLLLYTVPGKVCRAVFSLEYVMRLFSQQIL

>gi568815597r:30613585_30823551|GENSCAN_predicted_CDS_1|288_bp
atgaggacatcttgggtggtcagcccaggcagcggaagccacacgtgcagattcccagag
taccgacgtcatctctcagaggagattaacaaagacaaatcttcagactgcatagaaaat
atcactgatgatatgacttcaccatttcttgattacaccctgggcaaacagcgagagaca
gaaatcacaggaaaggtgcttctgctatacacagtcccaggcaaggtgtgcagagcagtg
ttctccctggagtacgtcatgcgtctgttttctcagcaaatcctgtga

>gi568815597r:30613585_30823551|GENSCAN_predicted_peptide_2|180_aa
MVTAFLRAPVSSLWPPLAPYPDKGLLTTFSLMGPLASQHPQQIPKEAGSPVCLSTCWILS
TELSARAGRDESALASYAALQMRIQGGEVGKFAQSFTPNVGGPGGRAFGFTLERIQGPAS
GVRQQLLLKQQCAAAACSSSKGKFQVSDHAKPPPLPSLEPIMRIVAWVHRMAPGADKAPA

>gi568815597r:30613585_30823551|GENSCAN_predicted_CDS_2|543_bp
atggtgacagcctttctgcgggctcctgtgagctcactgtggcctcccttggctccttac
ccagacaagggccttctcaccaccttcagcctcatgggacctcttgcctcccagcatcct
caacagatccccaaagaggccgggtccccagtatgcttaagcacctgctggatactaagt
acagagctcagcgccagggctgggagggatgaaagcgccctagcaagctatgctgcttta
cagatgagaatccaaggcggagaagtggggaaatttgcccaaagtttcacccccaatgtt
ggagggcctggtgggagggcttttggcttcaccctggagagaattcaagggccagccagt
ggtgttagacagcaacttttattgaagcagcagtgtgcagcagcagcatgcagcagcagc
aaagggaagttccaagtgtctgaccacgccaagccgcctcccttaccctctctggagccc
atcatgaggatagttgcctgggtccatcgcatggcacctggagctgacaaagcccctgcc
tga

>gi568815597r:30613585_30823551|GENSCAN_predicted_peptide_3|321_aa
MAWAAKRERAHSAGPSEWGDGTRGQSAIFPGVLSQGALRLCETAQLDGTYPGLGDGRGGM
PGVLLGPVGRSVHYSSLCPPHSAVIELPAGFENKAGRRELPSLDICLTASTTGNQMPEDK
ELVQNCNTTTTTATTTITTTVTTTITTITTTITTTTTTVTTTITTTTTTITTTVTTTTVT
TTTTTTVTTTTTTVTTTVTTTTTTTVTTTTTTTTTTTITTVTTTTTTTVTTVTTTTVTTV
TTTTTTTITTTTTTTITTTTTTVTTVTTTTTTTTITTTTTTTTTTTTTITTTTTTTITTT
ITTTTTTSITTTTTTITTTTY

>gi568815597r:30613585_30823551|GENSCAN_predicted_CDS_3|966_bp
atggcttgggccgcgaagcgtgagcgtgctcactcagctgggccctctgagtggggcgat
gggacccgagggcagagcgccatcttccctggcgtcctgagccagggggctctcaggctg
tgtgagacagcgcagctggatgggacctaccccgggcttggggacggcagaggaggcatg
cctggagttctcctgggcccagttggcaggagtgtccactacagctcactgtgccctccc
cacagtgcggtcatcgagctccctgcaggcttcgagaacaaggcagggaggagggaacta
ccttcactggacatttgcctcacggccagcaccacaggaaaccaaatgcccgaggataaa
gaactggtgcagaattgtaacaccaccaccaccaccgccaccaccaccatcactaccact
gtcaccaccaccatcaccaccatcaccaccaccatcaccaccaccaccaccaccgtcacc
accaccatcaccaccaccaccaccaccatcaccaccaccgtcaccaccaccaccgtcacc
accaccaccaccaccaccgtcaccaccaccaccaccactgtcaccaccaccgtcaccacc
accaccaccaccaccgtcaccaccaccaccaccaccaccaccaccaccaccatcaccacc
gtcaccaccaccaccaccaccaccgtcaccaccgtcaccaccaccacagtcaccactgtc
accaccaccaccaccaccaccatcaccaccaccaccaccaccaccatcaccaccaccacc
accacagtcaccactgtcaccaccaccaccaccaccaccaccatcaccaccaccaccacc
accaccaccaccaccaccaccaccatcaccaccaccaccaccaccaccatcaccaccacc
atcaccaccaccactaccacaagcatcactaccaccaccaccaccatcaccaccaccact
tactga

>gi568815597r:30613585_30823551|GENSCAN_predicted_peptide_4|149_aa
MQQWLTSRNGLRNYQNYQSTWISQSNHHKQQPGTHNPDLPQTPPVDGSNSPSRAATAITL
AAAFLESPSFWVPLCSPVAAMEAACGVLGPAAALQRAEWQLQLQPHEIKWIKAEAKGMKT
LTPCHFATSSARDKLAHKATEANKEMDRH

>gi568815597r:30613585_30823551|GENSCAN_predicted_CDS_4|450_bp
atgcagcaatggctaactagtagaaatgggctgagaaactaccaaaactaccagtcaacc
tggatcagtcaatccaaccaccacaaacagcaacctggaactcacaacccagatcttccc
cagactcctcctgttgatggcagcaacagtccatctagagcagccactgctattacactg
gctgcagcattcctggagtctccaagcttctgggtgccactgtgttctccagtggccgcc
atggaagctgcttgcggtgtacttggtccagctgcagccttgcagagagctgagtggcag
ctacagctccagccccatgaaatcaagtggataaaagctgaagcaaagggcatgaagacc
ttgactccctgtcattttgccaccagctctgccagagacaagctggcacacaaagccact
gaagccaataaggaaatggatcggcactga

>gi568815597r:30613585_30823551|GENSCAN_predicted_peptide_5|659_aa
MRVLSGTSLMLCSLLLLLQALCSPGLAPQSRGHLCRTRPTDLVFVVDSSRSVRPVEFEKV
KVFLSQVIESLDVGPNATRVGMVNYASTVKQEFSLRAHVSKAALLQAVRRIQPLSTGTMT
GLAIQFAITKAFGDAEGGRSRSPDISKPPLLDSPVGFREPGVTPPRVSQVVIVVTDGRPQ
DSVQDVSARARASGVELFAIGVGSVDKATLRQIASEPQDEHVDYVESYSVIEKLSRKFQE
AFCVVSDLCATGDHDCEQVCISSPGSYTCACHEGFTLNSDGKTCNVCSGGGGSSATDLVF
LIDGSKSVRPENFELVKKFISQIVDTLDVSDKLAQVGLVQYSSSVRQEFPLGRFHTKKDI
KAAVRNMSYMEKGTMTGAALKYLIDNSFTVSSGARPGAQKVGIVFTDGRSQDYINDAAKK
AKDLGFKMFAVGVGNAVEDELREIASEPVAEHYFYTADFKTINQIGKKLQKKICVALTTS
KHVECSLRGWQCSQCSPDITSSDPIWWGGGEAAMLIWTEKAQQCVPKEEERVISGRHGLG
AGGQKQQMSLMSGVRDGVEALPGNRTSFFPARTPLPQALKALVSFSDPGRINPCYLPGPS
VGSTSLGSSLIPQDGLGDPVAPTPSVSPSSDPTVLPSSVPHWTGGLEGSDGFSVPVVTE

>gi568815597r:30613585_30823551|GENSCAN_predicted_CDS_5|1980_bp
atgagggtcctctctggcactagcctcatgctctgcagcctgctgctgctgctccaggcc
ctgtgcagccctggcctcgccccccagtccagaggccatctctgccggacgcggcccaca
gacctggtgtttgttgtcgacagctctcgcagcgttcggcctgttgaatttgagaaagtg
aaggtattcctgtcccaggtcatcgagtcgctggacgtggggcccaatgccacccgggtg
ggcatggtcaactatgccagcaccgtgaagcaggagttctcgctgcgggctcatgtctcc
aaggccgcactgctgcaggctgtgcgccgtatccagccgctgtccacaggcaccatgacc
ggcctggccatccagttcgctatcaccaaagccttcggcgatgcagagggtggtcgttcc
aggtcccctgacatcagcaagcctcctctcctggacagtcccgtgggcttccgggagccc
ggtgtcacaccgccccgcgtgtcgcaggtggtcatcgtggtgacagacgggaggccccag
gacagcgtgcaggacgtgtctgcgcgggcccgggccagcggcgtcgagctgttcgccatc
ggagtgggcagcgtggacaaggccacgctgcggcagatcgccagcgagccgcaggacgaa
cacgtcgattacgtggagagctacagcgtcatcgagaagctgtccaggaagttccaggag
gccttctgcgtggtgtcagacctgtgcgccacaggggaccatgactgtgagcaggtgtgc
atcagctcccccggttcctacacctgcgcctgccacgagggcttcactctgaacagcgac
ggcaagacctgcaatgtctgcagtggtggtggtggcagctcggccactgacctggtcttc
ctcattgacggatccaagagtgtgaggccagagaactttgagctggtgaagaagttcatc
agtcagatcgtggatacgctggacgtgtcagacaagctggcccaggtggggctggtgcag
tactcaagctctgtgcgccaggagttccccctgggtcgcttccacaccaagaaggacatc
aaggcggctgtgcggaatatgtcctacatggagaagggcacaatgactggggctgctctc
aagtacctcattgacaattccttcactgtgtccagtggggctaggcccggggcccagaag
gtgggcattgtcttcactgatggccggagccaggactacattaatgatgctgccaagaag
gccaaagacctcggctttaagatgtttgctgtgggtgtgggcaatgccgtggaggatgag
ctgagggaaatagcctcagagcctgtggcagagcactacttctacacggctgacttcaag
accatcaaccagataggcaagaagttgcagaagaagatctgtgtggctcttactaccagc
aaacatgttgaatgctcgttacgtggctggcagtgttctcagtgctctccggatattaca
tcatccgatcctatttggtggggagggggagaggcagccatgttgatatggactgagaag
gctcagcagtgtgtccccaaggaggaggagagggtcattagcggacgccatggcctggga
gctggcgggcagaagcaacagatgtccctgatgagtggagtcagagatggggtggaagcc
ctgcctgggaataggacctcgttcttccctgcccggacacccctccctcaggccctcaag
gccctagtttctttctctgatccaggtagaattaacccctgctatcttccaggtcccagt
gtaggcagcacctccttggggagctccctgatcccccaggatgggctaggggaccctgta
gctcccacaccctctgtgtctccctcatcagatcccacggtgctgccatcatctgttcct
cactggactgggggcctggagggcagtgatggcttctctgtccccgtggtgactgaatag

>gi568815597r:30613585_30823551|GENSCAN_predicted_peptide_6|122_aa
MLEVNEENVSWGLLTNCSPHPNPPDGQGCVQGSGHKAPLAGQQLAHETALSAPPLNGSSM
GSSEEHRRLLCVTSPLISRAAEIHYRPHAWSAKLESRVRRRVLSSAGLSGEATEQQHILL
MG

>gi568815597r:30613585_30823551|GENSCAN_predicted_CDS_6|369_bp
atgctggaggtgaacgaggagaacgtgagctggggtctcctcaccaactgctccccccac
cccaacccccctgacggccagggctgtgtccagggctcagggcacaaggctccgttagct
gggcagcagctggcccatgaaacagccctttcagctccacctctgaatggcagttctatg
ggctcctcggaagaacacaggcgccttctctgtgtcacttctccgctcattagcagagct
gcagaaatacactacaggccccacgcatggtcagccaaactggaatccagggtgaggagg
cgtgtgctttcatctgccggcctgtctggggaggccacggagcagcagcacatccttctg
atgggttaa

>gi568815597r:30613585_30823551|GENSCAN_predicted_peptide_7|665_aa
MDIPEPLQVFRSCGSTGDLEWVAFGGAGIFCGSPEVVPSGCHYRLALGSPAKVVAGVDTL
SPDVATESPADLWQVFVRGEACVPSQAAGAPLGHPGSGSWGPVGIPWGLSGRCEGPLSPF
DQALVEPEVASDTHQTKGFFERPGSGELGFICPGICGTIRGPQGRSPGPHKPVSMMSLIF
LPPPPCSALPESPSLFLLWPSKEPVTTVQLSCGAATAGEALGTHQIVCRHPPNRSPGLIN
GSLLDFEPSATVAQPVRTTAGAAAETSFAKVIPVISGVKRLTHLHFMSMATLAVVSVFLP
EASGKQQKSGSFSLKITNFDLQCIRSTNSGPQNRNSLGARAIQIMQDNLPTHLKILNFMA
PVKFLCHCLRGGDGSTMDPRLSTVRQTCCCFNVRIATTALAIYHVATQGNQGGQVEGAVR
ACTVLLVLLPNHIMSVLLFIEHSVEVAHGKASCKLSQMGYLRIADLISSFLLITMLFIIS
LSLLIGVVKNREKYLLPFLSLQIMDYLLCLLTLLGSYIELPAYLKLASRSRASSSKFPLM
TLQLLDFCLSILTLCSSYMEVPTYLNFKSMNHMNYLPSQEDMPHNQFIKMMIIFSIAFIT
VLIFKVYMFKCVWRCYRLIKCMNSVEEKRNSKMLQKVVLPSYEEALSLPSKTPEGGPAPP
PYSEV

>gi568815597r:30613585_30823551|GENSCAN_predicted_CDS_7|1998_bp
atggatattccagagcctttgcaggttttccggagctgcggctccacaggggacctggag
tgggtggcctttggtggagcaggaatattttgtgggtctccagaggttgtccccagcggc
tgccactatcgcctggcccttggttctccagcaaaggtggtggcaggagtagacacatta
tccccagacgtggccactgagagtcctgcagacctgtggcaagtgtttgtcagaggggaa
gcatgtgtcccaagccaggctgcgggggccccccttggccacccaggcagcggaagctgg
gggccagtgggcatcccctggggcctctctggccggtgtgagggtcctttgtctccattt
gatcaggccctcgtggagccggaagtagcctctgatacccaccagacaaagggcttcttt
gagaggccaggaagtggcgagctgggatttatctgcccagggatttgtgggaccatccga
gggccacagggcaggagccctggtcctcacaaacctgtttctatgatgtcactgatcttc
ctccctccacctccttgctcagctctccctgagtcccccagtcttttcctgctctggccc
tccaaggagcctgtcacaacagtgcagctctcatgcggagctgccacagcaggggaggcc
ctggggacccatcagatagtttgccggcaccctcccaacagaagtcccggactgatcaat
ggctccctgctggactttgagccttcagccacagtggcccagcctgtcaggacgaccgca
ggggcagctgcggaaaccagctttgcaaaagttataccagttatatcgggggtcaaacgc
ctcacacacctgcactttatgtccatggcaaccctagcagttgtttctgttttcctccct
gaggcttctgggaagcagcagaagtcaggttccttctccctgaaaattacaaactttgac
cttcagtgcatccgctcaactaattcaggtcctcaaaatcgaaattctttaggggccagg
gccatccagataatgcaggataatctccccacccacctcaagatcctgaatttcatggcg
cctgtgaagtttctttgccattgtctcagaggaggggacggcagcaccatggacccccgc
ttgtccactgtccgccagacctgctgctgcttcaatgtccgcatcgcaaccaccgccctg
gccatctaccatgtggcaacccagggaaatcagggtgggcaggtagagggggcagttaga
gcatgcaccgtgctcctggtactactgccgaaccacatcatgagcgtcttgttgttcatc
gagcactcagtagaggtggcccatggcaaggcgtcctgcaagctctcccagatgggctac
ctcaggatcgctgacctgatctccagcttcctgctcatcaccatgctcttcatcatcagc
ctgagcctactgatcggcgtagtcaagaaccgggagaagtacctgctgcccttcctgtcc
ctgcaaatcatggactatctcctgtgcctgctcaccctgctgggctcctacattgagctg
cccgcctacctcaagttggcctcccggagccgtgctagctcctccaagttccccctgatg
acgctgcagctgctggacttctgcctgagcatcctgaccctctgcagctcctacatggaa
gtgcccacctatctcaacttcaagtccatgaaccacatgaattacctccccagccaggag
gatatgcctcataaccagttcatcaagatgatgatcatcttttccatcgccttcatcact
gtccttatcttcaaggtctacatgttcaagtgcgtgtggcggtgctacagattgatcaag
tgcatgaactcggtggaggagaagagaaactccaagatgctccagaaggtggtcctgccg
tcctacgaggaagccctgtctttgccatcgaagaccccagaggggggcccagcaccaccc
ccatactcagaggtgtga

>gi568815597r:30613585_30823551|GENSCAN_predicted_peptide_8|62_aa
MWLQGSNGQTGKVPAVALTSKAGAPGLRVCSRCLKHGPHQKKVRDDDMTLPGLIIRGLNW
GK

>gi568815597r:30613585_30823551|GENSCAN_predicted_CDS_8|189_bp
atgtggttacaaggttctaatggccaaactggcaaagttcctgctgttgccctcacctcc
aaggctggtgctcctggactcagggtgtgttccaggtgcctgaagcatggcccacaccag
aaaaaggtgagggatgacgacatgacccttcctggtctcatcatccggggactcaactgg
gggaagtga