GENSCAN 1.0	Date run:  2-Jun-117	Time: 11:46:51

Sequence gi568815597r:27000310_27254334 : 254025 bp : 49.06% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.03 PlyA -   3423   3418    6                               1.05
 1.02 Term -   6648   5635 1014  0  0  160   41  1724 0.997 167.01
 1.01 Init -  12358  12098  261  1  0   72   94   337 0.879  27.76
 1.00 Prom -  29672  29633   40                              -2.46

 2.05 PlyA -  30316  30311    6                               1.05
 2.04 Term -  31953  31876   78  0  0   62   37    43 0.048  -5.64
 2.03 Intr -  34117  33979  139  0  1   21   96    96 0.248   4.17
 2.02 Intr -  39301  39153  149  1  2   51   75    63 0.213   0.33
 2.01 Init -  40776  40741   36  0  0   82   92    62 0.621   6.04
 2.00 Prom -  47983  47944   40                              -5.26

 3.04 PlyA -  55957  55952    6                               1.05
 3.03 Term -  60808  60680  129  1  0   91   49    87 0.632   3.28
 3.02 Intr -  62755  62622  134  2  2   84   48    11 0.166  -2.94
 3.01 Init -  72981  72855  127  0  1   70   64   101 0.392   6.22
 3.00 Prom -  82101  82062   40                              -3.66

 4.18 PlyA -  82185  82180    6                               1.05
 4.17 Term - 100335  99998  338  1  2   85   41   455 0.958  35.23
 4.16 Intr - 100966 100894   73  1  1  109  110   137 0.999  16.98
 4.15 Intr - 101517 101416  102  0  0  113   63   204 0.999  20.77
 4.14 Intr - 101821 101707  115  0  1   70   76   177 0.998  15.15
 4.13 Intr - 102249 102076  174  2  0   95   73   322 0.999  30.45
 4.12 Intr - 102434 102364   71  2  2   77   58   120 0.990   5.88
 4.11 Intr - 103003 102914   90  1  0   86   84   172 0.959  16.79
 4.10 Intr - 105778 105576  203  2  2  151   53   477 0.999  49.50
 4.09 Intr - 107556 107339  218  2  2  121   68   378 0.990  37.25
 4.08 Intr - 109468 109218  251  1  2  100   69   569 0.591  52.44
 4.07 Intr - 113977 113517  461  2  2  119   65   963 0.178  90.00
 4.06 Intr - 123864 123825   40  0  1  115   84    34 0.219   3.50
 4.05 Intr - 127915 127757  159  1  0   46  101    73 0.321   4.58
 4.04 Intr - 132695 132603   93  2  0  112   81    -6 0.291   1.26
 4.03 Intr - 141649 141517  133  0  1   74   96    57 0.204   5.75
 4.02 Intr - 149535 149352  184  1  1   59   40   100 0.356   1.15
 4.01 Init - 154025 153674  352  2  1   93   97   313 0.893  28.02
 4.00 Prom - 154855 154816   40                              -3.66

 5.00 Prom + 166650 166689   40                              -4.46
 5.01 Sngl + 176774 176968  195  1  0   87   43   314 0.974  20.04
 5.02 PlyA + 176999 177004    6                               1.05

 6.03 PlyA - 178160 178155    6                               1.05
 6.02 Term - 200836 200521  316  0  1  -35   54   325 0.943  11.21
 6.01 Init - 201164 200881  284  2  2   97  -29   412 0.962  26.91
 6.00 Prom - 202569 202530   40                              -6.76

 7.00 Prom + 206307 206346   40                              -7.06
 7.01 Sngl + 206639 207193  555  1  0   82   50   586 0.145  50.33
 7.02 PlyA + 207634 207639    6                               1.05

 8.03 PlyA - 207675 207670    6                               1.05
 8.02 Term - 234347 234223  125  0  2  121   42    86 0.743   5.85
 8.01 Init - 237210 237123   88  0  1   56  100    23 0.329   1.11
 8.00 Prom - 247068 247029   40                              -0.66


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:27000310_27254334|GENSCAN_predicted_peptide_1|424_aa
MPSESGAERRDRAAAQVGTAAATAVATAAPAGGGPDPEALSAFPGRHLSGLSWPQVKRLD
ALLSEPIPIHGRGNFPTLSVQPRQIVQVVRSTLEEQGLHVHSVRLHGSAASHVLHPESGL
GYKDLDLVFRVDLRSEASFQLTKAVVLACLLDFLPAGVSRAKITPLTLKEAYVQKLVKVC
TDSDRWSLISLSNKSGKNVELKFVDSVRRQFEFSIDSFQIILDSLLLFGQCSSTPMSEAF
HPTVTGESLYGDFTEALEHLRHRVIATRSPEEIRGGGLLKYCHLLVRGFRPRPSTDVRAL
QRYMCSRFFIDFPDLVEQRRTLERYLEAHFGGADAARRYACLVTLHRVVNESTVCLMNHE
RRQTLDLIAALALQALAEQGPAATAALAWRPPGTDGVVPATVNYYVTPVQPLLAHAYPTW
LPCN

>gi568815597r:27000310_27254334|GENSCAN_predicted_CDS_1|1275_bp
atgccgtcggagagcggagctgagcgcagggaccgggcggctgctcaggtggggacggct
gcggccacggcggtggccacggcagccccggcaggcggcggccccgacccggaggcctta
tcggccttccccggacggcacctgagtgggctgagctggccacaggtgaagcgactggac
gctcttctgagcgagccgattcccattcacgggcgcggcaacttccccacgctgagcgtg
cagccccggcagatcgtgcaggtggtccgcagcaccctggaggagcagggactacatgtg
cacagtgtgcggctgcatggttcagctgccagccacgtgctgcaccctgagagtggcctg
ggctacaaggatctggacctggtgttccgggtggacctgcgcagtgaggcatccttccag
ctgaccaaggcagtggtgctggcctgcctactagacttcctgccggccggtgtgagccgg
gccaagatcacgccactgacactcaaggaggcatacgtgcagaagctggtgaaagtgtgc
acagactcggaccgctggagcctcatctcactgtccaacaagagcggcaagaacgtggag
ctcaagtttgtggactcggtgagacgccagtttgaattcagcatagactccttccagatc
atcctggactccctgttgctctttggccagtgctcgtccactcccatgtctgaggccttc
cacccaacggtcacaggcgaaagcctgtacggggacttcaccgaggccctggagcacctg
cggcaccgtgtcatcgccacgcgcagtcccgaggagatccgaggtggtggcctcctcaag
tactgccacctcctggtgcggggcttccggccccggcccagcaccgatgtgcgcgccctg
cagcgctacatgtgctcccgcttcttcatcgactttccagacctggtggagcagcggcgc
accctagagcgctacctggaggcccacttcggtggggcagatgcagcccgccgttacgcc
tgcctggtgacactgcaccgggtggtcaacgagagcaccgtgtgcctcatgaaccacgag
cgccgccagacgctggacctcattgccgcactggcgctgcaggcactggctgagcagggc
ccagctgccactgccgccctggcctggcgccctccaggcactgacggggttgtgccagcc
actgtcaattactacgtgacccccgtgcaacctctcctggctcacgcctatcccacctgg
ctgccttgtaactga

>gi568815597r:27000310_27254334|GENSCAN_predicted_peptide_2|133_aa
MVPGFQYILVNEAKTGQTGERRPCNEFGTCEAAVASPPRSPTVKEEEEETERRGLREGEP
GSHNHNHSHTNRHKGRTGSPQGYPNLASQQDPSPFLGPVEGNGTVLEQFCHLSNGKNTEF
MRIKHDSGKRSVL

>gi568815597r:27000310_27254334|GENSCAN_predicted_CDS_2|402_bp
atggtgccgggcttccagtatatcctggtgaacgaggctaaaacaggccaaactggggag
agaagaccatgcaatgagtttgggacatgtgaggctgcggtggccagccccccgagaagc
cccaccgtgaaggaggaagaggaagagaccgagaggagaggactcagggagggggagcct
ggaagccacaatcataatcacagtcacaccaacaggcacaagggcaggacaggaagtcct
caagggtaccctaacttggcaagccagcaggaccccagcccctttctgggccccgtggaa
ggcaacgggactgtcctggaacagttttgccatctgtcaaatggcaagaacaccgagttt
atgaggataaaacatgacagtggcaagagaagtgtcctgtaa

>gi568815597r:27000310_27254334|GENSCAN_predicted_peptide_3|129_aa
METQVQLDNKDPSKEDKLLSSMKENVCVTRQSPAGWLSHKGSAPQHPLLHQQFCTAENGG
HFHCGRCGKDRPFTHGGTGKHFQKSSLDTHPSCLTVELRLLTPLAASKGKRPRQSFSSDV
LLEDVLLVL

>gi568815597r:27000310_27254334|GENSCAN_predicted_CDS_3|390_bp
atggaaacgcaagtccagctcgacaacaaggatccatcgaaggaggacaaattgctgtct
tccatgaaggaaaatgtttgtgtaaccaggcagtcaccagctggctggctgagccacaag
ggctcagctccccaacacccacttctccaccagcaattctgcacagcagagaatggaggc
cacttccactgtggaaggtgtgggaaggacaggcctttcacccacgggggaactggaaaa
catttccagaaaagcagcctggatacacaccccagctgcctgactgtggagctccgcctt
ctaacccctctggcagcatccaaaggcaaaaggccacggcaaagcttctcctcagacgtc
ctccttgaagacgtcctccttgttttataa

>gi568815597r:27000310_27254334|GENSCAN_predicted_peptide_4|1018_aa
MVLRSGICGLSPHRIFPSLLVVVALVGLLPVLRSHGLQLSPTASTIRSSEPPRERSIGDV
TTAPPEVTPESRPVNHSVTDHGMKPRKAFPVLGIDYTHVRTPFEISLWILLACLMKIASP
MASSPGTKERRSQKPWVLLLMLPLSTCVTMNLEVHAPHSLNLTCLILKTNVEAERGNAWS
CSPSQANVELGCCAFYSIFAIKPGNKILSPRWPGPTGIWMLYQEAFGMIRFPWYGARWVP
LSRVFSYHVTVQYQVTEKLRFRIGTETTSLIDGPELFTLPAAASCKLAMARMLFCTQMPQ
LLAWTEMVWGKLVPGAPDTICFHVIPTISSIVPESCLLIVVGLLVGGLIKGVGETPPFLQ
SDVFFLFLLPPIILDAGYFLPLRQFTENLGTILIFAVVGTLWNAFFLGGLMYAVCLVGGE
QINNIGLLDNLLFGSIISAVDPVAVLAVFEEIHINELLHILVFGESLLNDAVTVVLYHLF
EEFANYEHVGIVDIFLGFLSFFVVALGGVLVGVVYGVIAAFTSRFTSHIRVIEPLFVFLY
SYMAYLSAELFHLSGIMALIASGVVMRPYVEANISHKSHTTIKYFLKMWSSVSETLIFIF
LGVSTVAGSHHWNWTFVISTLLFCLIARVLGVLGLTWFINKFRIVKLTPKDQFIIAYGGL
RGAIAFSLGYLLDKKHFPMCDLFLTAIITVIFFTVFVQGMTIRPLVDLLAVKKKQETKRS
INEEIHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYVKKCLIAGERSKEPQLIAFY
HKMEMKQAIELVESGGMGKIPSAVSTVSMQNIHPKSLPSERILPALSKDKEEEIRKILRN
NLQKTRQRLRSYNRHTLVADPYEEAWNQMLLRRQKARQLEQKINNYLTVPAHKLDSPTMS
RARIGSDPLAYEPKEDLPVITIDPASPQSPESVDLVNEELKGKVLGLSRDPAKVAEEDED
DDGGIMMRSKETSSPGTDDVFTPAPSDSPSSQRIQRCLSDPGPHPEPGEGEPFFPKGQ

>gi568815597r:27000310_27254334|GENSCAN_predicted_CDS_4|3057_bp
atggttctgcggtctggcatctgtggcctctctccacatcggatcttcccttccttactc
gtggtggttgctttggtggggctgctgcctgttctcaggagccatggcctccagctcagc
ccaactgccagcaccattcgaagctcagagccaccacgagaacgctcgattggggatgtc
accaccgctccaccggaggtcaccccagagagccgccctgttaatcattccgtcactgat
catggcatgaagccgcgcaaggcctttccagtcctgggcatcgactacacacacgtgcgc
acccccttcgagatctccctctggatccttctggcctgcctcatgaagatagccagcccc
atggcgtccagccctggtacaaaggaaagacgtagtcagaagccctgggttctgctcctg
atgctgcctctcagtacctgtgtgaccatgaaccttgaggttcatgcacctcattctctg
aacctgacttgcctcatccttaagaccaacgtagaggctgaacgtgggaatgcctggtcg
tgtagtccatcacaagccaatgttgaacttgggtgctgtgctttttatagcatctttgcc
atcaagccagggaataagatcttatctccccggtggccaggacccacaggaatctggatg
ctgtaccaggaagcatttggcatgataagatttccatggtacggggccaggtgggtccca
ctctcccgggtgtttagctaccacgtcacagtgcagtaccaggtcacagagaagttaaga
tttagaattgggacagaaactacctccctcattgatggaccagagctctttacgctgccc
gctgctgcctcgtgcaagcttgctatggcacgaatgctattctgtacccagatgccacag
ttgctggcatggacagagatggtgtggggcaaactggtacctggagcacctgataccatc
tgtttccatgtgatccccactatctcaagcatcgtcccggagagctgcctgctgatcgtg
gtggggctgctggtggggggcctgatcaagggtgtaggcgagacaccccccttcctgcag
tccgacgtcttcttcctcttcctgctgccgcccatcatcctggatgcgggctacttcctg
ccactgcggcagttcacagaaaacctgggcaccatcctgatctttgccgtggtgggcacg
ctgtggaacgccttcttcctgggcggcctcatgtacgccgtgtgcctggtgggcggtgag
cagatcaacaacatcggcctcctggacaacctgctcttcggcagcatcatctcggccgtg
gaccccgtggcggttctggctgtctttgaggaaattcacatcaatgagctgctgcacatc
cttgtttttggggagtccttgctcaatgacgccgtcactgtggtcctgtatcacctcttt
gaggagtttgccaactacgaacacgtgggcatcgtggacatcttcctcggcttcctgagc
ttcttcgtggtggccctgggcggggtgcttgtgggcgtggtctacggggtcatcgcagcc
ttcacctcccgatttacctcccacatccgggtcatcgagccgctcttcgtcttcctctac
agctacatggcctacttgtcagccgagctcttccacctgtcaggcatcatggcgctcata
gcctcaggagtggtgatgcgcccctatgtggaggccaacatctcccacaagtcccacacc
accatcaaatacttcctgaagatgtggagcagcgtcagcgagaccctcatcttcatcttc
ctcggcgtctccacggtggccggctcccaccactggaactggaccttcgtcatcagcacc
ctgctcttctgcctcatcgcccgcgtgctgggggtgctgggcctgacctggttcatcaac
aagttccgtatcgtgaagctgacccccaaggaccagttcatcatcgcctatgggggcctg
cgaggggccatcgccttctctctgggctacctcctggacaagaagcacttccccatgtgt
gacctgttcctcactgccatcatcactgtcatcttcttcaccgtctttgtgcagggcatg
accattcggcccctggtagacctgttggctgtgaagaaaaagcaagagacgaagcgctcc
atcaacgaagagatccacacacagttcctggaccaccttctgacaggcatcgaagacatc
tgtggccactacggtcaccaccactggaaggacaagctcaaccggtttaataagaaatat
gtgaagaagtgtctgatagctggcgagcgctccaaggagccccagctcattgccttctac
cacaagatggagatgaagcaggccatcgagctggtggagagcgggggcatgggcaagatc
ccctctgccgtctccaccgtctccatgcagaacatccaccccaagtccctgccttccgag
cgcatcctgccagcactgtccaaggacaaggaggaggagatccgcaaaatcctgaggaac
aacttgcagaagaccaggcagcggctgcggtcctacaacagacacacgctggtggcagac
ccctacgaggaagcctggaaccagatgctgctccggaggcagaaggcccggcagctggag
cagaagatcaacaactacctgacggtgccagcccacaagctggactcacccaccatgtct
cgggcccgcatcggctcagacccactggcctatgagccgaaggaggacctgcctgtcatc
accatcgacccggcttccccgcagtcacccgagtctgtggacctggtgaatgaagagctg
aagggcaaagtcttagggttgagccgggatcctgcaaaggtggctgaggaggacgaggac
gacgatgggggcatcatgatgcggagcaaggagacttcgtccccaggaaccgacgatgtc
ttcacccccgcgcccagtgacagccccagctcccagaggatacagcgctgcctcagtgac
ccaggcccacaccctgagcctggggagggagaaccgttcttccccaaggggcagtaa

>gi568815597r:27000310_27254334|GENSCAN_predicted_peptide_5|64_aa
MGARHRAWTHSIQITKVEAIAASKCPRPAVKQFHDSKIKFPLPHRVLRCQHKPHFTTRRP
NTFF

>gi568815597r:27000310_27254334|GENSCAN_predicted_CDS_5|195_bp
atgggcgcccggcaccgcgcctggacccattccatccagatcacgaaggtggaggcgatc
gcagccagcaagtgcccgcggccggccgtcaagcagttccacgactccaagatcaagttt
ccgctaccccaccgggtcctgcgctgtcagcacaagccacacttcaccacccggagaccc
aacaccttcttctag

>gi568815597r:27000310_27254334|GENSCAN_predicted_peptide_6|199_aa
MGGTTSTRRVTFEADENENITVVKGIRLSENVIDRMKESSPSGSKSQRYSGAYGASVSDE
ELKRRVAEELALEQAKKESEDEKRLKQPKSWTERGISSEEERAKAKHLARQLEEKDRVLK
KQDAFYNEQLARLEKRNSEFFRVTTEQYQKAAEEVEAKFKRYESHPVCADLQAKILQCYR
ENTHQTFKCSTLATQSGHA

>gi568815597r:27000310_27254334|GENSCAN_predicted_CDS_6|600_bp
atgggtgggaccaccagcacccgccgggtcaccttcgaggcggacgagaatgagaacatt
accgtggtgaagggcatccggctttcagaaaatgtgattgatcgaatgaaggaatcctct
ccatctggttcgaagtctcagcggtattctggtgcttatggtgcctcagtttctgatgaa
gaattgaaaagaagagtagctgaggagctggcattggagcaagccaagaaagaatctgaa
gatgagaaacgactaaagcagccaaagagctggaccgagagagggatatctagcgaggag
gaacgcgctaaggcaaagcacctggctaggcagctggaagagaaagaccgagtgctaaag
aagcaggatgcattctacaacgaacagctggctagactggagaagaggaactcagagttc
ttcagagtcaccactgaacaatatcagaaagctgctgaagaggtggaagcaaagttcaag
cggtatgagtctcatccagtctgtgctgatctgcaggccaaaattcttcagtgttaccgt
gagaacacccaccagaccttcaaatgctccactctggccacccagagtggccatgcttga

>gi568815597r:27000310_27254334|GENSCAN_predicted_peptide_7|184_aa
MDMSPLRPQNYLFGCELKADKDDHFKVDNDENEHQLSLRTVSLGAGTKDELHIVEAEAMN
YKGSPIKVTLATLKMSAQPTVSLGGFEITPPVVLRFKCGSGPVHISGQHLVAVEEDAESE
DEEEEDVKLLSISGKRSAPGGGSKVPQKKVKLAVDEDDDDDDDDDDDDFDDEEAEEKVPV
KKSI

>gi568815597r:27000310_27254334|GENSCAN_predicted_CDS_7|555_bp
atggacatgagccccctgaggccccagaactatcttttcggttgtgaactaaaggctgac
aaagatgatcactttaaggtggataatgatgaaaatgagcaccagttatctttaagaacg
gtcagtttaggggctggtacaaaggatgaattgcacattgttgaagcagaggcaatgaat
tacaaaggcagtccaattaaagtaacactggcaactttgaaaatgtctgcacagccaaca
gtttcccttgggggctttgaaataacaccaccagtggtcttaagatttaagtgtggttca
gggccagtgcatattagtggacagcacttagtagctgtggaggaagatgcagagtcagaa
gatgaagaggaggaggatgtgaaactcttaagtatatctggaaagcggtctgcccctgga
ggtggtagcaaggttccacagaaaaaagtaaaacttgctgttgatgaagatgatgatgat
gatgatgatgatgatgatgatgattttgatgatgaggaagctgaagaaaaagtgccagtg
aagaaatctatatga

>gi568815597r:27000310_27254334|GENSCAN_predicted_peptide_8|70_aa
MTAKKVQPKGFVGPAICNGSLKIQWSIWKAVWGPRRSPATRLRHAVSASALRLAAGGYAT
KTAPGRFQNG

>gi568815597r:27000310_27254334|GENSCAN_predicted_CDS_8|213_bp
atgacagctaagaaagtacaacctaagggttttgtgggcccagcaatctgcaatggcagc
ctaaagatacagtggagcatctggaaagctgtctggggacccaggagaagcccagcaacg
cgcctgcgccacgcagtctccgcctccgccctgcgcctcgcagccggcgggtacgctacg
aagactgcgcccggccgcttccagaatggctag