Result of FASTA (ccds) for pF1KE3105
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3105, 259 aa
  1>>>pF1KE3105     259 - 259 aa - 259 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0800+/-0.000676; mu= 16.8532+/- 0.041
 mean_var=68.4231+/-13.533, 0's: 0 Z-trim(110.7): 54  B-trim: 11 in 1/51
 Lambda= 0.155050
 statistics sampled from 11913 (11967) to 11913 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.358), width:  16
 Scan time:  1.100

The best scores are:                                      opt bits E(33420)
CCDS14.1 UBE2J2 gene_id:118424|Hs109|chr1          ( 259) 1751 399.9  9e-112
CCDS15.1 UBE2J2 gene_id:118424|Hs109|chr1          ( 275) 1456 334.0 6.9e-92
CCDS16.1 UBE2J2 gene_id:118424|Hs109|chr1          ( 207) 1397 320.7 5.2e-88
CCDS5021.1 UBE2J1 gene_id:51465|Hs109|chr6         ( 318)  454 109.9 2.3e-24
CCDS2282.1 UBE2E3 gene_id:10477|Hs109|chr2         ( 207)  270 68.6   4e-12
CCDS14580.1 UBE2A gene_id:7319|Hs109|chrX          ( 152)  265 67.4 6.9e-12
CCDS4174.1 UBE2B gene_id:7320|Hs109|chr5           ( 152)  265 67.4 6.9e-12
CCDS2638.1 UBE2E1 gene_id:7324|Hs109|chr3          ( 193)  266 67.7 7.1e-12
CCDS2637.1 UBE2E2 gene_id:7325|Hs109|chr3          ( 201)  265 67.5 8.5e-12
CCDS56244.1 UBE2E1 gene_id:7324|Hs109|chr3         ( 160)  252 64.5 5.4e-11
CCDS5474.1 UBE2D4 gene_id:51619|Hs109|chr7         ( 147)  248 63.6 9.3e-11


>>CCDS14.1 UBE2J2 gene_id:118424|Hs109|chr1               (259 aa)
 initn: 1751 init1: 1751 opt: 1751  Z-score: 2120.3  bits: 399.9 E(33420): 9e-112
Smith-Waterman score: 1751; 100.0% identity (100.0% similar) in 259 aa overlap (1-259:1-259)

               10        20        30        40        50        60
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 FMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 PQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIV
              190       200       210       220       230       240

              250         
pF1KE3 GFAAFAYTVKYVLRSIAQE
       :::::::::::::::::::
CCDS14 GFAAFAYTVKYVLRSIAQE
              250         

>>CCDS15.1 UBE2J2 gene_id:118424|Hs109|chr1               (275 aa)
 initn: 1737 init1: 1456 opt: 1456  Z-score: 1763.3  bits: 334.0 E(33420): 6.9e-92
Smith-Waterman score: 1709; 94.2% identity (94.2% similar) in 275 aa overlap (1-259:1-275)

               10        20        30        40                    
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEW----------------
       ::::::::::::::::::::::::::::::::::::::::::::                
CCDS15 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWFKRFSWLSLLSSWDYR
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KE3 HYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 HYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDT
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KE3 WNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 WNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVV
              130       140       150       160       170       180

          170       180       190       200       210       220    
pF1KE3 EEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQANR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 EEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQLLNGHAPGAVPNLAGLQQANR
              190       200       210       220       230       240

          230       240       250         
pF1KE3 HHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE
       :::::::::::::::::::::::::::::::::::
CCDS15 HHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE
              250       260       270     

>>CCDS16.1 UBE2J2 gene_id:118424|Hs109|chr1               (207 aa)
 initn: 1397 init1: 1397 opt: 1397  Z-score: 1693.7  bits: 320.7 E(33420): 5.2e-88
Smith-Waterman score: 1397; 100.0% identity (100.0% similar) in 207 aa overlap (53-259:1-207)

             30        40        50        60        70        80  
pF1KE3 RIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT
                                     ::::::::::::::::::::::::::::::
CCDS16                               MTPYEGGYYHGKLIFPREFPFKPPSIYMIT
                                             10        20        30

             90       100       110       120       130       140  
pF1KE3 PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQL
               40        50        60        70        80        90

            150       160       170       180       190       200  
pF1KE3 AVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 AVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGI
              100       110       120       130       140       150

            210       220       230       240       250         
pF1KE3 QLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 QLLNGHAPGAVPNLAGLQQANRHHGLLGGALANLFVIVGFAAFAYTVKYVLRSIAQE
              160       170       180       190       200       

>>CCDS5021.1 UBE2J1 gene_id:51465|Hs109|chr6              (318 aa)
 initn: 416 init1: 416 opt: 454  Z-score: 551.1  bits: 109.9 E(33420): 2.3e-24
Smith-Waterman score: 454; 40.7% identity (73.3% similar) in 150 aa overlap (1-149:1-147)

               10        20        30        40        50        60
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY
       : .  . ..:  :..:: ..  ..: ::. .  :.:: .:..:::..::::  . ..:: 
CCDS50 METRYNLKSP--AVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTVRGPPDSDFDGGV
               10          20         30        40        50       

               70        80        90       100       110       120
pF1KE3 YHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLS
       :::....: :.:.::::: ..: ::::. . ..::::.  ::.::.:.::. : : ....
CCDS50 YHGRIVLPPEYPMKPPSIILLTANGRFEVGKKICLSISGHHPETWQPSWSIRTALLAIIG
        60        70        80        90       100       110       

               130       140       150       160       170         
pF1KE3 FMVEKGP-TLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSS
       ::  ::  ..::.. .   .: :: .:  :                              
CCDS50 FMPTKGEGAIGSLDYTPEERRALAKKSQDFCCEGCGSAMKDVLLPLKSGSDSSQADQEAK
       120       130       140       150       160       170       

>>CCDS2282.1 UBE2E3 gene_id:10477|Hs109|chr2              (207 aa)
 initn: 187 init1: 159 opt: 270  Z-score: 331.3  bits: 68.6 E(33420): 4e-12
Smith-Waterman score: 270; 32.0% identity (61.9% similar) in 147 aa overlap (1-140:51-191)

                                             10        20        30
pF1KE3                               MSSTSSKRAPTTATQRLKQDYLRIKKDPVP
                                     .:: .. .  :.: .:....  .:  :: :
CCDS22 DADQRDPAAPEPEEQEERKPSATQQKKNTKLSSKTTAKLSTSA-KRIQKELAEITLDPPP
               30        40        50        60         70         

               40        50        60        70        80        90
pF1KE3 YICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN
          : :  .:: ::. .. ::  . :::: .   . :  ..:::::.. . :    ..::
CCDS22 NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRI--YHCN
      80        90       100       110       120       130         

                  100       110       120          130       140   
pF1KE3 TR----LCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT---LGSIETSDFTKRQLA
             .::   :.  :.:.:: ..: .: .. :.... .:.   .::: :. .:.:   
CCDS22 INSQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEH
       140          150       160       170       180       190    

           150       160       170       180       190       200   
pF1KE3 VQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQ
                                                                   
CCDS22 DRIARQWTKRYAT                                               
          200                                                      

>>CCDS14580.1 UBE2A gene_id:7319|Hs109|chrX               (152 aa)
 initn: 243 init1: 192 opt: 265  Z-score: 327.1  bits: 67.4 E(33420): 6.9e-12
Smith-Waterman score: 265; 33.9% identity (65.3% similar) in 121 aa overlap (11-127:3-118)

               10        20        30        40        50        60
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY
                 : : .:: .:. :...::   . . :  .::. :. :. ::: ::.: : 
CCDS14         MSTPARRRLMRDFKRLQEDPPAGVSGAPSENNIMVWNAVIFGPEGTPFEDGT
                       10        20        30        40        50  

               70        80            90       100       110      
pF1KE3 YHGKLIFPREFPFKPPSIYMIT----PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILT
       ..  . : .:.: :::.. ...    ::     .  .::.: .   . :.:...::.:::
CCDS14 FKLTIEFTEEYPNKPPTVRFVSKMFHPN--VYADGSICLDILQ---NRWSPTYDVSSILT
             60        70        80          90          100       

        120       130       140       150       160       170      
pF1KE3 GLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDE
       .. :.. : .:                                                 
CCDS14 SIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWRDC               
       110       120       130       140       150                 

>>CCDS4174.1 UBE2B gene_id:7320|Hs109|chr5                (152 aa)
 initn: 242 init1: 191 opt: 265  Z-score: 327.1  bits: 67.4 E(33420): 6.9e-12
Smith-Waterman score: 265; 34.7% identity (65.3% similar) in 121 aa overlap (11-127:3-118)

               10        20        30        40        50        60
pF1KE3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY
                 : : .:: .:. :...::   . . :  .::..:. :. ::: ::.: : 
CCDS41         MSTPARRRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGT
                       10        20        30        40        50  

               70            80        90       100       110      
pF1KE3 YHGKLIFPREFPFKPPSIY----MITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILT
       ..  . : .:.: :::..     :. ::     .  .::.: .   . :.:...::.:::
CCDS41 FKLVIEFSEEYPNKPPTVRFLSKMFHPN--VYADGSICLDILQ---NRWSPTYDVSSILT
             60        70        80          90          100       

        120       130       140       150       160       170      
pF1KE3 GLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDE
       .. :.. : .:                                                 
CCDS41 SIQSLLDEPNPNSPANSQAAQLYQENKREYEKRVSAIVEQSWNDS               
       110       120       130       140       150                 

>>CCDS2638.1 UBE2E1 gene_id:7324|Hs109|chr3               (193 aa)
 initn: 210 init1: 161 opt: 266  Z-score: 326.9  bits: 67.7 E(33420): 7.1e-12
Smith-Waterman score: 266; 31.3% identity (62.6% similar) in 147 aa overlap (1-140:36-177)

                                             10        20        30
pF1KE3                               MSSTSSKRAPTTATQRLKQDYLRIKKDPVP
                                     .: .....  .:...:....   :  :: :
CCDS26 SRASTSSSSSSSSNQQTEKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPP
          10        20        30        40        50        60     

               40        50        60        70        80        90
pF1KE3 YICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN
          : :  .:: ::. .. ::  . :::: .   . :  :.:::::.. . :    ..::
CCDS26 NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRI--YHCN
          70        80        90       100       110         120   

                  100       110       120          130       140   
pF1KE3 TR----LCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT---LGSIETSDFTKRQLA
             .::   :.  :.:.:: ..: .: .. :.... .:.   .::: :. .:.:   
CCDS26 INSQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEH
           130          140       150       160       170       180

           150       160       170       180       190       200   
pF1KE3 VQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQ
                                                                   
CCDS26 DRMARQWTKRYAT                                               
              190                                                  

>>CCDS2637.1 UBE2E2 gene_id:7325|Hs109|chr3               (201 aa)
 initn: 184 init1: 157 opt: 265  Z-score: 325.4  bits: 67.5 E(33420): 8.5e-12
Smith-Waterman score: 265; 33.1% identity (62.1% similar) in 145 aa overlap (5-140:46-185)

                                         10          20        30  
pF1KE3                           MSSTSSKRAP--TTATQRLKQDYLRIKKDPVPYI
                                     ::: :   .:...:....  .:  :: :  
CCDS26 GGSSDGDQRESVQQEPEREQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPPPNC
          20        30        40        50        60        70     

             40        50        60        70        80        90  
pF1KE3 CAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTR
        : :  .:: ::. .. ::  . :::: .   . :  ..:::::.. . :    ..::  
CCDS26 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRI--YHCNIN
          80        90       100       110       120         130   

                100       110       120          130       140     
pF1KE3 ----LCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT---LGSIETSDFTKRQLAVQ
           .::   :.  :.:.:: ..: .: .. :.... .:.   .::: :. .:.:     
CCDS26 SQGVICL---DILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDR
           140          150       160       170       180       190

         150       160       170       180       190       200     
pF1KE3 SLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGETHLVQNGIQLL
                                                                   
CCDS26 MARQWTKRYAT                                                 
              200                                                  

>>CCDS56244.1 UBE2E1 gene_id:7324|Hs109|chr3              (160 aa)
 initn: 188 init1: 161 opt: 252  Z-score: 311.1  bits: 64.5 E(33420): 5.4e-11
Smith-Waterman score: 252; 33.3% identity (60.6% similar) in 132 aa overlap (16-140:18-144)

                 10        20        30        40        50        
pF1KE3   MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEG
                        :....   :  :: :   : :  .:: ::. .. ::  . :::
CCDS56 MKEVGRPREVRGRPGKSRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEG
               10        20        30        40        50        60

       60        70        80        90           100       110    
pF1KE3 GYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTR----LCLSITDFHPDTWNPAWSVSTI
       : .   . :  :.:::::.. . :    ..::      .::   :.  :.:.:: ..: .
CCDS56 GVFFLDITFTPEYPFKPPKVTFRTRI--YHCNINSQGVICL---DILKDNWSPALTISKV
               70        80          90          100       110     

          120          130       140       150       160       170 
pF1KE3 LTGLLSFMVEKGPT---LGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQ
       : .. :.... .:.   .::: :. .:.:                               
CCDS56 LLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT               
         120       130       140       150       160               




259 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Jul  3 20:39:40 2020 done: Fri Jul  3 20:39:40 2020
 Total Scan time:  1.100 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
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