GENSCAN 1.0	Date run:  8-Nov-116	Time: 16:24:32

Sequence gi568815575r:139631657_139926825 : 295169 bp : 39.02% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.06 PlyA -   1219   1214    6                               1.05
 1.05 Term -  11017  10900  118  0  1   97   48   109 0.262   4.83
 1.04 Intr -  15247  15133  115  2  1  110   75    41 0.173   3.59
 1.03 Intr -  20132  20064   69  0  0   82  107    10 0.109   0.54
 1.02 Intr -  25115  25088   28  2  1   92   44    75 0.017   0.27
 1.01 Init -  36369  36307   63  0  0   77   92    55 0.213   6.00
 1.00 Prom -  39141  39102   40                              -3.65

 2.03 PlyA -  39905  39900    6                               1.05
 2.02 Term -  41577  40128 1450  2  1  -13   42   501 0.026  24.62
 2.01 Init -  43771  43626  146  1  2   88   71   122 0.255  10.14
 2.00 Prom -  47134  47095   40                              -5.85

 3.00 Prom +  49032  49071   40                              -1.15
 3.01 Sngl +  55486  55833  348  0  0   78   40   155 0.908   5.50
 3.02 PlyA +  56818  56823    6                               1.05

 4.03 PlyA -  58878  58873    6                               1.05
 4.02 Term -  60053  59815  239  0  2   46   40   168 0.814   3.15
 4.01 Init -  60526  60259  268  1  1   71  111   296 0.765  25.39
 4.00 Prom -  65222  65183   40                              -3.05

 5.00 Prom +  69547  69586   40                              -0.35
 5.01 Init +  85302  85478  177  2  0   64   36   146 0.429   6.31
 5.02 Intr +  88497  88662  166  2  1   67   44    77 0.219  -0.19
 5.03 Intr +  99991 100176  186  2  0   40   93    76 0.029   2.04
 5.04 Intr + 111579 111647   69  1  0  110   16    73 0.033   0.54
 5.05 Intr + 114084 114104   21  1  0  120  106    27 0.083   4.30
 5.06 Intr + 115422 115475   54  1  0   66  100    50 0.077   2.03
 5.07 Term + 122125 122393  269  2  2   21   48   168 0.078   0.77
 5.08 PlyA + 122457 122462    6                               1.05

 6.00 Prom + 125429 125468   40                              -5.95
 6.01 Init + 139872 140007  136  2  1   53   57   155 0.418   9.25
 6.02 Term + 140707 141143  437  2  2   50   33   220 0.452   7.16
 6.03 PlyA + 141834 141839    6                               1.05

 7.19 PlyA - 142003 141998    6                               1.05
 7.18 Term - 143297 143030  268  1  1   53   48   294 0.697  15.88
 7.17 Intr - 151072 150891  182  1  2   55   32   235 0.108  12.34
 7.16 Intr - 151611 151508  104  1  2   69   89    43 0.984   1.47
 7.15 Intr - 153643 153570   74  0  2   75   83    93 0.993   5.63
 7.14 Intr - 156687 156536  152  0  2  115   98   136 0.984  15.34
 7.13 Intr - 157832 157671  162  2  0  101   52   103 0.958   7.25
 7.12 Intr - 164814 164617  198  0  0   94   66   168 0.439  13.83
 7.11 Intr - 165670 165520  151  0  1   94   86    15 0.374   1.14
 7.10 Intr - 170683 170580  104  1  2   75   71   150 0.217  10.05
 7.09 Intr - 172943 172815  129  2  0   86   87    69 0.989   6.57
 7.08 Intr - 183329 183222  108  2  0   88   63   101 0.978   7.16
 7.07 Intr - 185287 185207   81  1  0   80   99    71 0.987   6.32
 7.06 Intr - 195167 195048  120  2  0   77  115   117 0.999  13.07
 7.05 Intr - 219684 219517  168  0  0   67   62    68 0.088   1.32
 7.04 Intr - 222095 221954  142  1  1   62   17   111 0.097   0.83
 7.03 Intr - 224267 224116  152  2  2   58   65   111 0.276   3.84
 7.02 Intr - 226106 225971  136  1  1   80   45    70 0.066   1.55
 7.01 Init - 234789 234746   44  0  2  100   42    64 0.079   1.08
 7.00 Prom - 253084 253045   40                              -4.25

 8.00 Prom + 262275 262314   40                              -5.15
 8.01 Init + 292471 292619  149  0  2   66   98   145 0.923  12.91
 8.02 Term + 293194 293323  130  1  1   38   55    77 0.713  -3.93
 8.03 PlyA + 293465 293470    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  41417  40128 1290  2  0   70   42   430 0.914  32.32
S.002 Init - 144123 144002  122  0  2   59  100    58 0.886   3.84
S.003 Term - 151072 150887  186  1  0   55   36   235 0.892  11.51


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815575r:139631657_139926825|GENSCAN_predicted_peptide_1|130_aa
MGLLQLGLRHKLKMGYHYVAQEKIRVEIREETDLLLRIKDISHFLMQDIAFLSGGRGKDN
AWIITFPENCNFRCIPEEVIAKVLTYLTSIASIAATVLMEAATAALFDRDFWLPFLNTTQ
EAARISSTLR

>gi568815575r:139631657_139926825|GENSCAN_predicted_CDS_1|393_bp
atggggctcctacagctggggctgaggcacaagctaaaaatgggctaccactatgttgct
caggaaaaaatccgtgtggaaattcgagaggaaaccgatctgctcctccgtataaaggac
atcagtcatttcttaatgcaagacatcgccttcttgtctggtggccggggaaaggacaat
gcttggatcattacgtttccagaaaactgtaattttagatgtataccagaggaagtaata
gcaaaagtacttacttacctgacatctattgcaagcattgctgccactgtgctaatggaa
gcagccacggcagctttgtttgatagagatttttggctgccgtttttaaatactacccaa
gaagcagctcgtatttcatcaacgttgcgttga

>gi568815575r:139631657_139926825|GENSCAN_predicted_peptide_2|531_aa
MGRNQSRNAENSKNQRAFSPPKDCISSPAMEQSWTENDFDELTEVGFRRLLARLIKKKRE
KNQIDAIKNDKGDITTDPTEIQTTIREYYKHLYANKLENLEEMDKFLDTYTLPRLNQEEL
ESLNRPITGSEIEAIISSLRTKKSPGPDGFTAEFYQRYKEELVLFLLKLFQSIEKEGILP
NSFYEASIILIPKPGRDTTKKENFRLISLMNIDVKILNKILANRIQQHIKKLVHHDQVGF
IPGMPDWFNICKSINIIHHINRTNGKNHMIISIDAEKAFEKIQQCFMLKTLNKLGIDGMY
LKIIRAIFDKPTANVILNGQKLEAFPLKTGTTQGCPLSPLLFKIVLEVLARAIRQEKEIK
RIQLGKEEAKLSLFADDMIVYLENPIVSAQNLLQLRSNFSKVLGYKINMQKSQAFLYTKN
KQTESQIMSELPFTIATKRIKYLGIQLTRDVKSLFKENYKPLLSKIKEDTNKWKNIPSSW
IGRISIAKMAILPKVIYTFNAIPIKLPMTFFTELEKTTLKFIWNQKRASIA

>gi568815575r:139631657_139926825|GENSCAN_predicted_CDS_2|1596_bp
atggggagaaaccagagcagaaatgctgaaaattctaaaaaccagagagccttttctcct
ccaaaggattgcatctcctcgccagcaatggaacaaagctggacagagaatgactttgat
gagctgacagaagtaggcttcagaagactgctagcaagactaataaagaagaaaagagag
aagaatcaaatagacgcaataaaaaatgataagggggatatcaccaccgatcccacagaa
atacaaactaccattagagaatactacaagcacctctacgcaaataaactagaaaatcta
gaagaaatggataaattcctcgacacatacaccctcccaagactaaaccaggaagaactt
gaatctctgaatagaccaataacaggctctgaaattgaggcaataattagtagcctacga
acaaaaaagagtccaggaccagatggattcacagccgaattctaccagagatacaaggag
gagctggtactattccttctgaaactattccaatcaatagaaaaagagggaatcctccct
aactcattttatgaggccagcatcatcctgataccaaagcctggcagagacacaacaaaa
aaagagaattttaggctaatatccctgatgaatatcgatgtgaaaatcctcaataaaata
ctggcaaaccgaatccagcagcacatcaaaaagcttgtccaccatgatcaagttggcttc
atccctgggatgccagactggttcaacatatgcaaatcaataaacataatccatcacata
aacaggaccaacggcaaaaaccatatgattatctcaatagatgcagaaaaggcctttgag
aaaattcaacagtgcttcatgctaaaaactctcaataaactaggtattgatggaatgtat
ctcaaaataataagagctatttttgataaacccacagccaatgtcatactgaatgggcaa
aaactggaagcatttcctttgaaaactggcacaacacaggggtgccccctctcaccactc
ctattcaagatagtgttggaagttctggccagggcaatcaggcaagagaaagaaataaag
cgtattcagttaggaaaagaagaagccaaattgtccctgtttgcagatgacatgattgta
tatttagaaaacccaattgtctcagcccaaaatctccttcagctgagaagcaacttcagc
aaagtcttaggatacaaaatcaatatgcaaaaatcacaagcattcctatacactaagaac
aaacaaacagagagccaaatcatgagtgaactcccattcacaattgctacaaagagaata
aaatacctaggaatccaacttacaagggatgtgaagtccctcttcaaggagaactacaaa
ccactgctcagcaaaataaaagaggacacaaacaaatggaagaacattccaagctcatgg
ataggaagaatcagtatcgcgaaaatggccatactgcccaaggtaatttatacattcaat
gccatccccatcaagctaccaatgactttcttcacagaattggaaaaaactactttaaag
ttcatatggaaccaaaaaagagcctccattgcctag

>gi568815575r:139631657_139926825|GENSCAN_predicted_peptide_3|115_aa
MLLSQGLSTDCPLFLKHSPPVTSGSSLPTSFRILLNGIFPVLEVTRSHSDSYICHKHTMR
GSLGEKINVTSVTLASGQELTVSGTRRRSNRKRHWPCQPSDRRHLSSWDWPLLLP

>gi568815575r:139631657_139926825|GENSCAN_predicted_CDS_3|348_bp
atgctcttgtctcaaggcctttccactgactgccccctcttcctgaaacactctccccca
gtcacctctggtagttcacttcctacctccttcaggattttgctcaatggcatcttccca
gtgctggaagtaacaagaagtcactcagattcttacatctgccataaacatacaatgagg
ggaagtttgggtgaaaaaataaatgtaacttctgtgacactggcctctggccaggagcta
actgtctctggaacaagacgtcgaagcaacagaaagaggcactggccttgtcagccatca
gatagaaggcatctctcctcatgggattggcctctgctcctgccctag

>gi568815575r:139631657_139926825|GENSCAN_predicted_peptide_4|168_aa
MAAAGARPYLGSPRRAARHMPQAAASAPWTSVSCGRIPGLPQNPDGCTFMPIAQAIPLQV
DMAMALQRVRIAEKYGKNYLCLLQAVFVAVALPATNSLGHPFSVPLASCRAAGVQLWSQL
AGGEIRSSGPAGGPWESAGSSMKLSLPLLVQVSYPLLTHFGASPEKWE

>gi568815575r:139631657_139926825|GENSCAN_predicted_CDS_4|507_bp
atggcagcggcaggggcccggccctacctgggttcgccaaggcgggcggccaggcacatg
ccccaagctgccgcttcggcgccgtggacctcagtgtcctgcggcaggatcccaggcctg
ccccagaacccagatggctgcactttcatgccgatagcccaggcgatccctctgcaggtg
gacatggccatggccctgcagcgcgtgaggattgccgagaagtacgggaagaactacctc
tgcctcctgcaagcagtcttcgtggcagtggcgctcccagccacgaactcgctgggtcat
ccgttctccgttcctctggccagctgccgcgctgcaggcgtgcagctctggtctcagctc
gcaggaggtgagatcaggagctctggtcccgcaggaggaccgtgggaaagtgcaggaagc
agtatgaaactgtctctgccattgctggttcaggtctcctatccccttctcacccacttt
ggtgcgtccccggagaagtgggaatag

>gi568815575r:139631657_139926825|GENSCAN_predicted_peptide_5|313_aa
MVKGGISVIRQPWNTFTAALGPQISHCGRQRRNRRDLQMPYGESCVHELLRERAKEMTLC
LFFLPEEKGKLEGWSAASWEPETAWVVRLWSMEAKAKRLAVSRGVSTKGEDKQQGTCYNT
LDSSENVRKRRGLTEGLADNESDALLQLRFLCNSEAKILKAFENWLTYLVIIYLKKACLY
ATYHNALKTAIKKKQIFDIRMQSEKEKKWQNEVAASQKQALPIATWVTEQEKKKEKKGKG
KGKKRRRKGNQRKKLERGQINNPTSQLEELQKQEQTNPKARRKQEITQIRAELRETEMQK
NHTKDQEIQEMVI

>gi568815575r:139631657_139926825|GENSCAN_predicted_CDS_5|942_bp
atggtgaaaggtggtattagtgtaatcaggcagccatggaacaccttcacagcagctttg
gggccacagatatctcactgtgggaggcagagaagaaacagaagagaccttcagatgcca
tatggagagagctgtgtccatgagctcttacgagaacgtgcaaaagagatgactttgtgt
ctgttcttccttcccgaagagaaaggcaagctggagggctggtctgcagcatcctgggag
cctgagacagcctgggttgttaggctgtggagcatggaggcaaaggcaaaaagattagca
gtgtcccgtggagtctccacaaaaggggaagataaacagcaaggtacctgttacaataca
ttagattcgtctgagaatgttcgtaaaagaagaggtctgactgaaggtctggcggataat
gagtcagatgcccttctacagctcagatttctctgtaatagtgaggcaaagatacttaaa
gcatttgaaaattggttaacctacctggtgattatatatttaaaaaaagcctgtttatat
gccacttatcataacgccttaaaaacagcaataaagaagaaacagattttcgacataagg
atgcagtctgaaaaagaaaaaaaatggcagaatgaggtagctgcttcccagaaacaagct
ctccctatagccacctgggtgacagagcaagagaaaaagaaagaaaagaaagggaaaggg
aaagggaagaaaagaagaagaaaaggaaaccaaagaaagaagttagaaagaggtcaaatt
aacaacccaacatcacaactagaggaactacagaaacaagagcaaaccaaccccaaagct
agaagaaaacaagaaataacccaaatcagagctgaactgagggaaactgagatgcaaaaa
aaccatacaaaagaccaagaaatccaggagatggttatttga

>gi568815575r:139631657_139926825|GENSCAN_predicted_peptide_6|190_aa
MWESLEPPRHLLNGFDKNADSDMKSKVQAEVVSDRDEELVGNRSKVQKGNVVLESPYRVP
TGALISGAMRRGPPSSRPQNGRSTDSLHCAPGKAADTQCQPVKAARRETIPCKATEAELP
KTMGTHLLHQHDLDVRHGVKVDHFGALIIDCPAGFQTCMGPLIPLFWPISPIWNGYIYPI
PVPPLYLGSN

>gi568815575r:139631657_139926825|GENSCAN_predicted_CDS_6|573_bp
atgtgggaaagtttggaacctcctagacacttgttgaatggctttgacaaaaatgctgat
agtgatatgaaaagtaaggttcaggctgaggtggtctcagacagagatgaggaacttgtt
gggaaccggagcaaagtgcagaagggaaatgtggtgttggagtccccatacagagtccct
actggggcactgattagtggagctatgagaagagggccaccatcctccagaccccagaat
ggtagatccactgacagcttgcactgtgcacctggaaaagccgcagacactcaatgccag
cctgtgaaagcagccaggagggagactataccctgcaaggccacagaggcagagctgccc
aagaccatgggaacccacctcttgcatcagcatgacctggatgtgagacatggagtcaaa
gtagatcattttggagctttaataattgactgccctgctggatttcagacttgcatgggc
cctctaatccctttgttttggccaatttctcccatttggaacggctatatttacccaata
cctgtacccccattgtatctaggaagtaactag

>gi568815575r:139631657_139926825|GENSCAN_predicted_peptide_7|824_aa
MPGFLKLFICVIMGSKARYFYIEGCALTDGIMVSVHLDKGGEGVLTLTHVAPAAALFPYW
WSTEHWTNYDIKVYIGGQASWLTLGSLSKSPQIKWSQFTNVQSEESQEGQSKAIAATDRM
YLGHLRVTGLRIFDKKATGLSMASVLSGYVLVYTDNKVNWHHVDTTKVYGMDFVEQQLDP
HLGSLEPWLGWPWSAGLECREERLWADSLWSMPQCAGEEKRVGTRTVFVGNHPVSETEAY
IAQRFCDNRIVSSKVTVDTPTSPVTSGLPLFFVITVTAIKQGYEDCLRHRADNEVNKSTV
YIIENAKRVRKESEKIKVGDVVEVQADETFPCDLILLSSCTTDGTCYVTTASLDGESNCK
THYAVRDTIALCTAESIDTLRAAIECEQPQPDLYKSINAFLIVYLFILLTKAAVCTTLKY
VWQSTPYNDEPWYNQKTQKERETLKVLKMFTDFLSFMVLFNFIIPVSMYVTVEMQKFLGS
FFISWDKDFYDEEINEGALVNTSDLNEELGQVDYVFTDKTGTLTENSMEFIECCIDGHKY
KGVTQEVDGLSQTDGTLTYFDKVDKNREELFLRALCLCHTVEIKTNDAVDGATESAELTY
ISSSPDEIALVKGAKRYELLHTLNFDAVRRRMSVIVKTQEGDILLFCKGADSAVFPRVQN
HEIELTKVHVERNAMDGYRTLCVAFKEIAPDDYERINRQLIEAKMALQDREEKMEKVFDD
IETNMNLIGATAVEDKLQDQAAETIEALHAAGLKVWVLTGDKMETAKSTCYACRLFQTNT
ELLELTTKTIEESERKEDRLHELLIEYRKKLLHEFPKSTRSFKK

>gi568815575r:139631657_139926825|GENSCAN_predicted_CDS_7|2475_bp
atgcctggcttcctgaagctttttatctgtgtgatcatgggcagcaaggcaaggtacttc
tatatagaagggtgcgcccttacagatggaataatggtgagcgtacacttggacaaggga
ggggaaggggttcttaccctgacgcacgtggcccctgctgctgcgttgttcccctattgg
tggtccacagaacactggaccaactacgatataaaggtctacatcggggggcaagcctcc
tggttgacactggggtctttatcgaaatctccccagattaaatggtcccaatttactaat
gtccagtctgaggagagtcaggagggacagagcaaagccattgctgctacagatagaatg
tatttaggccatctgcgggttactgggttaaggatttttgataagaaggctacggggttg
tccatggcctcagtgctttcgggctacgtccttgtttacactgacaacaaagtgaattgg
caccatgtagacaccaccaaggtttatggcatggactttgtggagcagcagctcgatcct
cacctgggctcccttgagccatggctggggtggccatggagtgctgggctggaatgcagg
gaggagagactctgggcagatagcctgtggagtatgccccagtgtgctggagaagagaaa
cgagttggcacacgcacagtgtttgttggcaatcatccagtttcggaaacagaagcttac
attgcacaaagattttgtgataatagaatagtctcatctaaggtcacagtagacacacca
actagcccagttaccagtggacttccacttttctttgttataactgttacagccatcaag
cagggatatgaggattgtctgagacacagagctgacaatgaagtcaacaaaagcactgtt
tacattattgaaaatgcaaagcgagtgagaaaagaaagtgaaaaaatcaaggttggtgat
gtagtagaagtacaggcagatgaaacctttccctgtgatcttattcttctatcatcttgc
accactgatggaacctgttatgtcactacagccagtcttgatggggaatccaattgcaag
acacattatgcagtacgtgataccattgcactgtgtacagcagaatccatcgataccctc
cgagcagcaattgaatgtgaacagcctcaacctgacctctacaaatctattaatgctttc
ctgattgtatatttatttatcttactgaccaaagctgcagtatgcactactctaaagtat
gtttggcaaagtaccccatacaatgatgaaccttggtataaccaaaagactcagaaagag
cgagagaccttgaaggttttaaaaatgttcaccgacttcctatcatttatggttctattc
aactttatcattcctgtctccatgtacgtcacagtagaaatgcagaaattcttgggctcc
ttcttcatctcatgggataaggacttttatgatgaagaaattaatgaaggagccctggtt
aacacatcagaccttaatgaagaacttggtcaggtggattatgtatttacagataagact
ggaacactcactgaaaacagcatggaattcattgaatgctgcatagatggccacaaatat
aaaggtgtaactcaagaggttgatggattatctcaaactgatggaactttaacatatttt
gacaaagtagataagaatcgagaagagctgtttctacgtgccttgtgtttatgtcatact
gtagaaatcaaaacaaacgatgctgttgatggagctacagaatcagctgaattaacctat
atctcctcttcaccagatgaaatagctttggtgaaaggagctaaaagatatgaacttctt
cacaccttaaactttgatgctgtccggcgacgtatgagtgtaattgtgaagactcaagaa
ggagacatacttctcttttgtaaaggagcagactcggcagtttttcccagagtgcaaaat
catgaaattgagttaactaaagtccatgtggaacgtaatgcaatggatgggtatcggaca
ctctgtgtagccttcaaagaaattgctccagatgattatgaaagaattaacagacagctc
atagaggcaaaaatggccttacaagacagagaagaaaaaatggaaaaagttttcgatgat
attgagacaaacatgaatttaattggagccactgcagttgaagacaagctacaagatcaa
gctgcagagaccattgaagctctgcatgcagcaggcctgaaagtctgggtgctcactggg
gacaagatggagacagctaaatccacatgctatgcctgccgccttttccagaccaacact
gagctcttagaactaaccacaaaaaccattgaagaaagtgaaaggaaagaagatcgatta
catgaattattgatagaatatcgcaagaaattgctgcatgagtttcctaaaagtactaga
agctttaaaaagtaa

>gi568815575r:139631657_139926825|GENSCAN_predicted_peptide_8|92_aa
MKIHELGDAPERKPASVDAKLAETSILPGSPTGCINLPPAGCSSASSDKQLGPNEPFPVT
DFALYPFAIINHIRKRFYVLSSASESTNLGRF

>gi568815575r:139631657_139926825|GENSCAN_predicted_CDS_8|279_bp
atgaaaatccacgaacttggcgatgctccagagaggaaaccagcaagtgttgacgctaaa
ctggcagaaacatcaatacttcctggctcccccactgggtgcatcaatttaccaccggca
ggctgctcttctgcttcaagtgacaaacaacttggccccaatgagccttttcccgttact
gactttgctctgtatccttttgctataataaatcacatccgcaagcgtttctatgtactg
agttctgccagtgaatcaacaaacctaggccggttttga