Result of FASTA (omim) for pF1KE5136
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5136, 136 aa
  1>>>pF1KE5136     136 - 136 aa - 136 aa
Library: /omim/omim.rfq.tfa
  64369986 residues in 92320 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7054+/-0.00031; mu= 15.4342+/- 0.019
 mean_var=65.7993+/-12.822, 0's: 0 Z-trim(116.5): 19  B-trim: 252 in 1/50
 Lambda= 0.158112
 statistics sampled from 28800 (28819) to 28800 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.312), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(92320)
NP_003527 (OMIM: 602818) histone H3.1 [Homo sapien ( 136)  870 206.3 1.3e-53
NP_003525 (OMIM: 602815) histone H3.1 [Homo sapien ( 136)  870 206.3 1.3e-53
NP_003523 (OMIM: 602813) histone H3.1 [Homo sapien ( 136)  870 206.3 1.3e-53
NP_003521 (OMIM: 602811) histone H3.1 [Homo sapien ( 136)  870 206.3 1.3e-53
NP_003524 (OMIM: 602814) histone H3.1 [Homo sapien ( 136)  870 206.3 1.3e-53
NP_003520 (OMIM: 602810) histone H3.1 [Homo sapien ( 136)  870 206.3 1.3e-53
NP_066298 (OMIM: 602816) histone H3.1 [Homo sapien ( 136)  870 206.3 1.3e-53
NP_003522 (OMIM: 602812) histone H3.1 [Homo sapien ( 136)  870 206.3 1.3e-53
NP_003526 (OMIM: 602817) histone H3.1 [Homo sapien ( 136)  870 206.3 1.3e-53
NP_003528 (OMIM: 602819) histone H3.1 [Homo sapien ( 136)  870 206.3 1.3e-53
NP_066403 (OMIM: 142780) histone H3.2 [Homo sapien ( 136)  856 203.2 1.2e-52
NP_003484 (OMIM: 602820) histone H3.1t [Homo sapie ( 136)  852 202.2 2.2e-52
NP_005315 (OMIM: 601058) histone H3.3 [Homo sapien ( 136)  837 198.8 2.4e-51
NP_002098 (OMIM: 601128) histone H3.3 [Homo sapien ( 136)  837 198.8 2.4e-51
NP_001013721 (OMIM: 616134) histone H3.3C [Homo sa ( 135)  791 188.3 3.5e-48
NP_001800 (OMIM: 117139) histone H3-like centromer ( 140)  374 93.2 1.5e-19
NP_001035891 (OMIM: 117139) histone H3-like centro ( 114)  168 46.2 1.8e-05


>>NP_003527 (OMIM: 602818) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 870 init1: 870 opt: 870  Z-score: 1084.1  bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KE5 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003525 (OMIM: 602815) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 870 init1: 870 opt: 870  Z-score: 1084.1  bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KE5 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003523 (OMIM: 602813) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 870 init1: 870 opt: 870  Z-score: 1084.1  bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KE5 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003521 (OMIM: 602811) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 870 init1: 870 opt: 870  Z-score: 1084.1  bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KE5 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003524 (OMIM: 602814) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 870 init1: 870 opt: 870  Z-score: 1084.1  bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KE5 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003520 (OMIM: 602810) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 870 init1: 870 opt: 870  Z-score: 1084.1  bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KE5 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_066298 (OMIM: 602816) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 870 init1: 870 opt: 870  Z-score: 1084.1  bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KE5 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_066 MPKDIQLARRIRGERA
              130      

>>NP_003522 (OMIM: 602812) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 870 init1: 870 opt: 870  Z-score: 1084.1  bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KE5 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003526 (OMIM: 602817) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 870 init1: 870 opt: 870  Z-score: 1084.1  bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KE5 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      

>>NP_003528 (OMIM: 602819) histone H3.1 [Homo sapiens]    (136 aa)
 initn: 870 init1: 870 opt: 870  Z-score: 1084.1  bits: 206.3 E(92320): 1.3e-53
Smith-Waterman score: 870; 100.0% identity (100.0% similar) in 136 aa overlap (1-136:1-136)

               10        20        30        40        50        60
pF1KE5 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI
               70        80        90       100       110       120

              130      
pF1KE5 MPKDIQLARRIRGERA
       ::::::::::::::::
NP_003 MPKDIQLARRIRGERA
              130      




136 residues in 1 query   sequences
64369986 residues in 92320 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct 24 21:35:46 2019 done: Thu Oct 24 21:35:46 2019
 Total Scan time:  2.990 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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