GENSCAN 1.0	Date run:  8-Nov-116	Time: 16:19:07

Sequence gi568815592f:158563269_158864601 : 301333 bp : 46.32% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   1755   1885  131  2  2   86   20   173 0.942   8.00
 1.02 Intr +  10152  10255  104  0  2  112   94   206 0.833  23.42
 1.03 Intr +  22036  22157  122  2  2  117   84   115 0.987  14.21
 1.04 Intr +  26404  26514  111  0  0   77   98   106 0.977  11.08
 1.05 Intr +  41999  42079   81  1  0   53   74   102 0.348   5.13
 1.06 Intr +  43976  44075  100  1  1   62   64    43 0.581  -1.02
 1.07 Intr +  45065  45195  131  0  2   83   99   187 0.806  19.71
 1.08 Intr +  46661  46735   75  1  0   55   70    75 0.556   2.11
 1.09 Intr +  61836  61938  103  2  1  114  106    61 0.681  10.25
 1.10 Intr +  66456  66551   96  1  0   69  103    37 0.904   3.28
 1.11 Intr +  68055  68121   67  1  1   65  106    96 0.995   7.06
 1.12 Term +  68542  68620   79  1  1   51   52   198 0.999   9.74
 1.13 PlyA +  69804  69809    6                               1.05

 2.08 PlyA -  69853  69848    6                               1.05
 2.07 Term -  73629  73559   71  1  2  143   43    76 0.995   6.70
 2.06 Intr -  74626  74503  124  1  1   91   20    80 0.960   1.66
 2.05 Intr -  78092  78051   42  2  0  119   94    33 0.907   5.44
 2.04 Intr -  91285  91116  170  2  2  108    1    82 0.014   1.17
 2.03 Intr -  92050  91998   53  0  2   72   89    18 0.381  -1.15
 2.02 Intr -  93088  92907  182  1  2   73   76    56 0.357   1.57
 2.01 Init -  96473  96381   93  2  0   51   61    92 0.367   3.18
 2.00 Prom -  98725  98686   40                              -8.06

 3.00 Prom +  98986  99025   40                              -6.56
 3.01 Init + 100001 100110  110  1  2   80   78    84 0.963   6.29
 3.02 Intr + 102073 102345  273  1  0   62  115   208 0.935  17.55
 3.03 Intr + 119657 119721   65  2  2  103   84    71 0.472   6.56
 3.04 Term + 127594 127676   83  2  2   69   35    89 0.359  -0.44
 3.05 PlyA + 127914 127919    6                               1.05

 4.00 Prom + 136693 136732   40                              -6.46
 4.01 Init + 139956 140116  161  2  2   61   28   216 0.511  10.25
 4.02 Intr + 145054 145123   70  1  1   84   59    85 0.982   4.38
 4.03 Intr + 149802 149939  138  2  0   82   64    61 0.930   3.76
 4.04 Intr + 150532 150610   79  0  1  101  106    58 0.814   8.02
 4.05 Intr + 154819 154943  125  2  2  101   42    75 0.501   4.50
 4.06 Intr + 162235 162369  135  0  0  113   94   -33 0.001   0.56
 4.07 Intr + 182212 182390  179  0  2   75   94   136 0.005  11.62
 4.08 Intr + 188660 188762  103  2  1  117   75   104 0.965  12.18
 4.09 Intr + 193943 194113  171  1  0  124   59   216 0.867  22.44
 4.10 Intr + 197372 197477  106  1  1   93   86    63 0.905   6.39
 4.11 Term + 201227 201336  110  0  2  111   44    31 0.714  -0.33
 4.12 PlyA + 201582 201587    6                               1.05

 5.17 PlyA - 201953 201948    6                               1.05
 5.16 Term - 203810 203646  165  2  0   49   42   384 0.999  27.82
 5.15 Intr - 204244 203993  252  1  0   38   81   576 0.957  49.53
 5.14 Intr - 206150 206058   93  2  0   87   96   128 0.948  13.66
 5.13 Intr - 206676 206516  161  1  2   96   62   230 0.998  20.91
 5.12 Intr - 207626 207496  131  1  2   80   55   244 0.999  20.64
 5.11 Intr - 208139 207976  164  2  2   76   89   238 0.999  21.47
 5.10 Intr - 213236 213140   97  1  1   93   95    90 0.983  10.21
 5.09 Intr - 220398 220252  147  2  0   69   78   137 0.991  10.15
 5.08 Intr - 221459 221376   84  1  0   94   89    72 0.991   6.84
 5.07 Intr - 222366 222041  326  0  2   -4  105   438 0.953  30.87
 5.06 Intr - 226103 226020   84  2  0  105   77   117 0.965  12.32
 5.05 Intr - 232564 232446  119  2  2  104   54    31 0.668   1.48
 5.04 Intr - 254898 254814   85  0  1   69  100   156 0.864  14.29
 5.03 Intr - 271645 271527  119  2  2   78   57    66 0.262   2.68
 5.02 Intr - 272829 272725  105  1  0   82   42    60 0.152   0.99
 5.01 Init - 278902 278611  292  1  1   87    4   221 0.163  10.91

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  53654  52611 1044  2  0   43   41   272 0.991  15.15
S.002 Init -  81440  81414   27  2  0   81   76    33 0.857   1.07
S.003 Term -  91285  91041  245  2  2  108   53    99 0.859   4.46
S.004 Sngl + 112710 113363  654  2  0   86   54   179 0.964  10.49
S.005 Init + 182248 182390  143  0  2   81   94   127 0.993  12.21


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:158563269_158864601|GENSCAN_predicted_peptide_1|399_aa
MKVSLTPLGPLLRMLVLLGSVEVGMLVLASLTSLSLSLQDSNLRLAPMRLYTLSKRHFVL
VFVVFFICFGLTIFVGIRETSIKTSFPMTVKVDGVAQDGTTMYIHNKVHNRTRTLTCAGK
CAEIIVAHLGYLNYTQYTVIVGFEHLKLPIKGMNFTWKTYNPAFSRLEIWFRFFFVVLTF
IVTCLFAHSLRKFSMRDWGIEQKWMSVLLPLLLLYNDPFFPLSFLVNSWLPGMLDDLFQS
MFLCALLLFWLCVYHGIRVQVEEYVRTAMRPTDVGKVLQQGFHGQGMKVFFMVVAAVYIL
YLLFLIVRACSELRHMPYVAPPAEFLSFYGLLNFYLYTLAFVYSPSKNALYESQLKDNPA
FSMLNDSDDDVIYGSDYEEMPLQNGQAIRAKYKEESDSD

>gi568815592f:158563269_158864601|GENSCAN_predicted_CDS_1|1200_bp
atgaaggtgtctctcacaccccttgggcccctgctgcggatgctggtgttgctgggttct
gtagaagtgggaatgctggtgctggcttccctcacatctctgtccctctcgctgcaggac
agcaatttgaggctggcgcccatgcggctctacacgctctccaagcgccactttgtcctc
gtgtttgtcgtcttcttcatctgctttggcctgaccatcttcgttgggatcagagaaact
tctattaagacaagctttcccatgactgttaaagtcgatggtgtagctcaagatggaacc
acgatgtacattcataacaaagttcacaaccggacaaggaccctcacatgtgcagggaaa
tgtgcggagattattgtggctcaccttggctacctgaactacactcagtatacagtgata
gtgggatttgaacacctgaagctccccatcaagggaatgaacttcacatggaagacttat
aaccctgccttctcccggttggaaatctggttccggtttttctttgtggtgctcaccttc
atcgtcacttgcctgtttgcgcattccctccggaaattttccatgagagactggggcatc
gagcagaagtggatgtctgttctcctgcctctgctgctactttacaatgatccgttcttc
cccctctccttcctggtcaacagctggctcccagggatgctggatgacctctttcagtcc
atgttcctgtgcgccctgctgctcttctggctgtgcgtgtaccacgggattcgtgtccag
gtggaggagtacgtcaggactgccatgaggcccaccgacgttgggaaagtacttcagcag
gggttccatggccagggaatgaaggtcttcttcatggtggtggcagcggtgtacattctg
tacctcttgttcttgatagtgcgggcgtgttccgagctacgtcacatgccttatgtggca
ccaccagccgagttcttatctttctatggcctgttgaacttctatctctacaccttggcc
tttgtatattctccatcgaagaatgccctctatgagtcccagctgaaagacaatcctgcc
ttctccatgctgaatgactcggatgatgatgtgatttatgggagtgactatgaggaaatg
ccgctgcagaacggccaggccatccgggccaagtacaaggaggagtcagatagtgactga

>gi568815592f:158563269_158864601|GENSCAN_predicted_peptide_2|244_aa
MKSQDAVYSFNTLKEIQKDILKMQTTKTIAQANDHMQPPRAAVMLLNGPRGRGRLTGDRK
GQDTCLAETPPPGLGEEGSCVRIGKEEKASLGAGSPYSSTAGSKDGQGARRPKSRKLSHC
SGIGRDAGSHGENFNLGVSIGLYLVMLYPSGTSASRQTQFGYGIECTAFVVDEVSNIVKE
AIESAIGGNAYQHSKVNQWTTNVVEQTLSQLTKLGKPFKYIGSCTVRWENKTMYCIVSAF
GLSI

>gi568815592f:158563269_158864601|GENSCAN_predicted_CDS_2|735_bp
atgaaaagtcaagatgctgtctatagctttaatacactgaaagaaatacagaaagacatc
ctcaaaatgcaaacgactaagacaattgcccaggcaaacgaccacatgcaaccacccaga
gcagcagtgatgttgctgaatggaccacgaggaagaggaagactgacaggtgacaggaaa
ggacaggacacctgcctggctgagacgccaccgccaggcctgggagaagaggggagttgt
gtgaggattggaaaggaggagaaggcatctctaggggcaggaagcccatattcaagtaca
gcaggaagtaaggacgggcagggggcaagaaggcccaagagtaggaagttaagccactgt
tctgggattgggagggacgcgggcagccatggggaaaacttcaatctaggtgtttccatt
ggtctttatctggtcatgctgtatcccagtggaacttcggcatccagacaaacacagttt
ggttacggcattgagtgtactgcttttgttgttgatgaagtgagcaacattgtaaaagag
gctatagaaagcgcaattggtggtaacgcttatcaacacagcaaagtgaaccagtggacc
acaaatgtagtagaacaaactttaagccaactcaccaagctgggaaaaccatttaaatac
atcgggagctgcactgtgcgatgggagaataagaccatgtactgcatcgtcagtgccttc
ggactgtctatttga

>gi568815592f:158563269_158864601|GENSCAN_predicted_peptide_3|176_aa
MAQEIDLSALKELEREAILQVLYRDQAVQNTEEERTRLGSGVPSNTIFFNSEGCRKLKTH
LQHLRWKGAKNTDWEHKEKCCARCQQVLGFLLHRGAVCRGCSHRVCAQCRVFLRGTHAWK
CTVCFEDRNVKIKTGEWFYEERAKKFPTGGSSPGQPGIITFCASIHGHLAIRAEGF

>gi568815592f:158563269_158864601|GENSCAN_predicted_CDS_3|531_bp
atggcccaagaaatagatctgagtgctctcaaggagttagaacgcgaggccattctccag
gtcctgtaccgagaccaggcggttcaaaacacagaggaggagaggacacgcctggggtca
ggtgttccatctaatactatcttctttaactctgagggctgcaggaaactgaaaacacac
ctgcagcatctccggtggaaaggagcgaagaacacggactgggagcacaaagagaagtgc
tgtgcgcgctgccagcaggtgctggggttcctgctgcaccggggcgccgtgtgccggggc
tgcagccaccgcgtgtgtgcccagtgccgagtgttcctgagggggacccatgcctggaag
tgcacggtgtgcttcgaggacaggaatgtcaaaataaaaactggagaatggttctatgag
gaacgagccaagaaatttccaactggaggaagctccccaggacaacctggcatcatcacc
ttctgtgcctccatccacgggcatttggcaatccgtgcagagggtttttaa

>gi568815592f:158563269_158864601|GENSCAN_predicted_peptide_4|458_aa
MLRAVPGRHGCQPAMCLRQALAASDLGPGLQLFLSLAKTGIPAKVTRQPDRAGCKISVVP
PTPPPVSESQCSRSPGRFQTETGVTFKILLYFLLEISNSPESFQYLRAHDVFIGQMDDWM
GGNLQEFGQFRGFNKSVENLFLSLATHVKKLSKSQNDMTSEKHLLATGPRQCVGQTERRS
QSDTAVNVTTRKVSAPDILKPLNQEDPKCSTNPILKQQNLPSSPAPSTIFSGGFRHGSLI
SIDSTCTEMGNFDNANVTGEIEFAIHYCFKTHSLEICIKACKNLAYGEEKKKKCNPYVKT
YLLPDRSSQGKRKTGVQRNTVDPTFQETLKYQVAPAQLVTRQLQVSVWHLGTLARRVFLG
EVIIPLATWDFEDSTTQSFRWHPLRAKAEKYEDSVPQSNGELTVRAKLVLPSRPRKLQEA
QEEGDTAVGGDACSLSKLQWQKVLSSPNLWTDMTLVLH

>gi568815592f:158563269_158864601|GENSCAN_predicted_CDS_4|1377_bp
atgctccgcgccgtgcctggcagacacggctgccaaccagccatgtgcctgagacaagcc
ctggcagcctcagacctgggccctggcctgcagctgttcctgtccctggcaaagacgggt
atccctgctaaagtcactcgccagccagaccgggcagggtgcaaaatttctgtggttcct
cctactccacctcctgtcagcgagagccagtgcagccgcagtcctggcaggtttcaaact
gagactggggtgaccttcaaaatcctgctctactttctcctggaaatttcaaattctcca
gagtcgttccagtacctacgtgctcatgatgtatttattggacagatggatgattggatg
ggtggtaatttacaggaatttggtcagtttagaggatttaataagtccgtggaaaatttg
tttctgtctcttgctacccacgtgaaaaagctctccaaatcccagaatgatatgacttct
gagaagcatcttctcgccacgggccccaggcagtgtgtgggacagacagagagacggagc
cagtctgacactgcggtcaacgtcaccaccaggaaggtcagtgcaccagatattctgaaa
cctctcaatcaagaggatcccaaatgctctactaaccctattttgaagcaacagaatctc
ccatccagtccggcacccagtaccatattctctggaggttttagacacggaagtttaatt
agcattgacagcacctgtacagagatgggcaattttgacaatgctaatgtcactggagaa
atagaatttgccattcattattgcttcaaaacccattctttagaaatatgcatcaaggcc
tgtaagaaccttgcctatggagaagaaaagaagaaaaagtgcaatccgtatgtgaagacc
tacctgttgcccgacagatcctcccagggaaagcgcaagactggagtccaaaggaacacc
gtggacccgacctttcaggagaccttgaagtatcaggtggcccctgcccagctggtgacc
cggcagctgcaggtctcggtgtggcatctgggcacgctggcccggagagtgtttcttgga
gaagtgatcattcctctggccacgtgggactttgaagacagcacaacacagtccttccgc
tggcatccgctccgggccaaggcggagaaatacgaagacagcgttcctcagagtaatgga
gagctcacagtccgggctaagctggttctcccttcacggcccagaaaactccaagaggct
caagaagagggagacacagctgttggcggggatgcatgctcactatcgaagctccagtgg
cagaaagtcctttccagccccaatctatggacagacatgactcttgtcctgcactga

>gi568815592f:158563269_158864601|GENSCAN_predicted_peptide_5|807_aa
METLYRVPFLVLECPNLKLKKPPWLQVLSAMIVYALMVVSYFLVTGGIIYDVIVEPPSIG
SMTDEHGHQRPVAFLAYRVNEQCIMEGLASSFLFTIGASRMGVVPGPSFSLTAQSAQPSL
APAGPVLSYVVEEALEWKQGFLYDSLSGWGCPDGKAMLPGYSHDRQAGPSSWVGTASSLL
LDSRVFGDRGYSPETENAETMIPKFGLLKITCGSDSFLGCGCLKSFCGDSDGEADVGSTV
INVRVTTMDAELEFAIQPNTTGKQLFDQWAFVFRICVESVACFVQVSAQEVRKENPLQFK
FRAKFYPEDVAEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNK
EVHKSGYLSSERLIPQRVMDQHKLTRDQWEDRIQVWHAEHRGMLKDNAMLEYLKIAQDLE
MYGINYFEIKNKKGTDLWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFNDKKFVIKP
IDKKAPDFVFYAPRLRINKRILQLCMGNHELYMRRRKPDTIEVQQMKAQAREEKHQKQLE
RQQLETEKKRRETVEREKEQMMREKEELMLRLQDYEEKTKKAERELSEQIQRALQLEEER
KRAQEEAERLEADRMAALRAKEELERQAVDQIKSQEQLAAELAEYTAKIALLEEARRRKE
DEVEEWQHRAKEAQDDLVKTKEELHLVMTAPPPPPPPVYEPVSYHVQESLQDEGAEPTGY
SAELSSEGIRDDRNEEKRITEAEKNERVQRQLLTLSSELSQARDENKRTHNDIIHNENMR
QGRDKYKTLRQIRQGNTKQRIDEFEAL

>gi568815592f:158563269_158864601|GENSCAN_predicted_CDS_5|2424_bp
atggagactttgtaccgtgtcccattcttagtgctcgaatgtcccaacctgaagctgaag
aagccgccctggctgcaagtgctgtcggccatgattgtgtatgctctgatggtggtgtct
tacttcctcgtcactggaggaataatttatgatgttattgttgaacctccaagcattggc
tctatgactgatgaacacgggcatcagaggccagtagctttcttggcctacagagtaaat
gaacaatgtattatggaaggacttgcatccagcttcctgtttacaataggagcttcacgg
atgggcgtggttccaggtcctagcttctccctgactgcccagtctgcccagccttccttg
gctccagcaggccctgtcctgagctatgtcgttgaagaggccttggagtggaaacaaggg
ttcttgtatgactccctgagtggctggggatgtccagatggcaaggctatgctgcccggt
tactcacacgacaggcaagctgggccatcgtcctgggttgggacagcgtcttcgctgctg
ctggatagtcgtgttttcggggatcgaggatactcaccagaaaccgaaaatgccgaaacc
atgattcccaaatttggcctcctcaaaatcacttgtggaagtgacagcttcctgggctgc
gggtgtttgaaaagcttctgtggggattctgatggtgaggctgatgtgggaagcactgtg
atcaatgtccgagttaccaccatggatgcagagctggagtttgcaatccagccaaataca
actggaaaacagctttttgatcagtgggccttcgtcttccggatttgtgtggagagtgtg
gcttgtttcgtgcaggtgtctgcccaggaggtcaggaaggagaatcccctccagttcaag
ttccgggccaagttctaccctgaagatgtggctgaggagctcatccaggacatcacccag
aaacttttcttcctccaagtgaaggaaggaatccttagcgatgagatctactgcccccct
gagactgccgtgctcttggggtcctacgctgtgcaggccaagtttggggactacaacaaa
gaagtgcacaagtctgggtacctcagctctgagcggctgatccctcaaagagtgatggac
cagcacaaacttaccagggaccagtgggaggaccggatccaggtgtggcatgcggaacac
cgtgggatgctcaaagataatgctatgttggaatacctgaagattgctcaggacctggaa
atgtatggaatcaactatttcgagataaaaaacaagaaaggaacagacctttggcttgga
gttgatgcccttggactgaatatttatgagaaagatgataagttaaccccaaagattggc
tttccttggagtgaaatcaggaacatctctttcaatgacaaaaagtttgtcattaaaccc
atcgacaagaaggcacctgactttgtgttttatgccccacgtctgagaatcaacaagcgg
atcctgcagctctgcatgggcaaccatgagttgtatatgcgccgcaggaagcctgacacc
atcgaggtgcagcagatgaaggcccaggcccgggaggagaagcatcagaagcagctggag
cggcaacagctggaaacagagaagaaaaggagagaaaccgtggagagagagaaagagcag
atgatgcgcgagaaggaggagttgatgctgcggctgcaggactatgaggagaagacaaag
aaggcagagagagagctctcggagcagattcagagggccctgcagctggaggaggagagg
aagcgggcacaggaggaggccgagcgcctagaggctgaccgtatggctgcactgcgggct
aaggaggagctggagagacaggcggtggatcagataaagagccaggagcagctggctgcg
gagcttgcagaatacactgccaagattgccctcctggaagaggcgcggaggcgcaaggag
gatgaagttgaagagtggcagcacagggccaaagaagcccaggatgacctggtgaagacc
aaggaggagctgcacctggtgatgacagcacccccgcccccaccaccccccgtgtacgag
ccggtgagctaccatgtccaggagagcttgcaggatgagggcgcagagcccacgggctac
agcgcggagctgtctagtgagggcatccgggatgaccgcaatgaggagaagcgcatcact
gaggcagagaagaacgagcgtgtgcagcggcagctgctgacgctgagcagcgagctgtcc
caggcccgagatgagaataagaggacccacaatgacatcatccacaacgagaacatgagg
caaggccgggacaagtacaagacgctgcggcagatccggcagggcaacaccaagcagcgc
atcgacgagttcgaggccctgtaa