GENSCAN 1.0	Date run:  8-Nov-116	Time: 13:41:19

Sequence gi568815587f:124963368_125186018 : 222651 bp : 43.03% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   4992   5097  106  2  1   72   80    87 0.141   4.70
 1.02 Intr +   7854   8094  241  1  1  -26   71   179 0.045   1.41
 1.03 Intr +  20497  20617  121  1  1   35   96    -9 0.024  -4.90
 1.04 Intr +  23375  23521  147  1  0   71  103   143 0.999  14.53
 1.05 Intr +  23760  23963  204  2  0   68   32    93 0.507   1.10
 1.06 Intr +  28094  28216  123  1  0   65   80    57 0.883   3.38
 1.07 Intr +  29802  29876   75  2  0   91   76    27 0.731   1.51
 1.08 Intr +  40500  40592   93  2  0   73   87    81 0.917   6.66
 1.09 Intr +  41742  41845  104  2  2   49  106   106 0.813   7.47
 1.10 Intr +  52749  52833   85  0  1   48   82    83 0.243   3.52
 1.11 Intr +  57569  57611   43  1  1  100   76    36 0.116   1.41
 1.12 Term +  63393  63502  110  1  2   53   34    81 0.032  -2.13
 1.13 PlyA +  65987  65992    6                               1.05

 2.10 PlyA -  66671  66666    6                               1.05
 2.09 Term -  67239  66972  268  2  1   55   44   151 0.344   2.37
 2.08 Intr -  67967  67672  296  2  2  114   37   174 0.681  10.71
 2.07 Intr -  68883  68728  156  0  0   75   77    97 0.903   7.51
 2.06 Intr -  69634  69481  154  0  1   67  100   150 0.941  14.17
 2.05 Intr -  91932  91911   22  1  1   66  115    52 0.069   2.30
 2.04 Intr -  95298  95124  175  0  1   -1  105    32 0.044  -4.49
 2.03 Intr -  98078  97977  102  2  0   65   85    38 0.731   1.57
 2.02 Intr -  99065  98950  116  0  2  103   98    65 0.720   9.17
 2.01 Init -  99341  99188  154  2  1   92   29   104 0.603   3.19
 2.00 Prom - 102508 102469   40                              -5.56

 3.00 Prom + 105661 105700   40                              -5.36
 3.01 Init + 106378 106389   12  0  0   70   89    20 0.396  -0.40
 3.02 Intr + 109664 109788  125  1  2   76   71    74 0.655   3.88
 3.03 Intr + 113390 113471   82  2  1  122  100    73 0.751  11.54
 3.04 Intr + 113863 113956   94  0  1   93   91    62 0.993   6.54
 3.05 Intr + 114083 114161   79  0  1   93  110   218 0.987  23.11
 3.06 Intr + 115745 115880  136  2  1   76   80   165 0.983  15.07
 3.07 Intr + 116317 116393   77  0  2  162   81    30 0.999   8.01
 3.08 Intr + 117247 117413  167  1  2  131   92   359 0.992  40.20
 3.09 Intr + 118331 118539  209  0  2   51   63   132 0.472   5.80
 3.10 Intr + 118877 118967   91  1  1   95  106   172 0.999  19.27
 3.11 Intr + 120448 120510   63  2  0   95   66    99 0.991   7.09
 3.12 Intr + 120867 120952   86  1  2   56   74    91 0.913   4.04
 3.13 Intr + 121458 121506   49  2  1  129   66    82 0.996   8.35
 3.14 Intr + 121699 121772   74  2  2   80  105   124 0.999  12.43
 3.15 Intr + 122028 122106   79  2  1  112   48   228 0.999  20.32
 3.16 Intr + 122210 122307   98  0  2   80   91   102 0.987   9.43
 3.17 Intr + 122587 122651   65  0  2  114  100    -5 0.365   0.82
 3.18 Term + 126374 126803  430  2  1   57   41   243 0.221  11.27
 3.19 PlyA + 127051 127056    6                               1.05

 4.04 PlyA - 133681 133676    6                               1.05
 4.03 Term - 134373 134239  135  0  0  104   47    99 0.982   5.42
 4.02 Intr - 137936 137834  103  1  1   95   98   -13 0.982   0.58
 4.01 Init - 138874 138765  110  1  2   79   94   151 0.994  12.49
 4.00 Prom - 143951 143912   40                              -4.36

 5.00 Prom + 144860 144899   40                              -3.56
 5.01 Sngl + 150593 150994  402  1  0   39   54   643 0.646  52.27
 5.02 PlyA + 151064 151069    6                              -5.51

 6.00 Prom + 151074 151113   40                             -16.42
 6.01 Sngl + 151139 151498  360  1  0   32   52   377 0.886  24.57
 6.02 PlyA + 151538 151543    6                               1.05

 7.00 Prom + 171331 171370   40                              -4.16
 7.01 Init + 177135 177289  155  2  2   69   66   187 0.647  13.11
 7.02 Term + 181616 181628   13  2  1  112   55    13 0.277  -1.93
 7.03 PlyA + 182256 182261    6                               1.05

 8.00 Prom + 182491 182530   40                              -1.46
 8.01 Init + 188820 188834   15  2  0  102   81    26 0.004   3.67
 8.02 Intr + 197215 197336  122  0  2   53   97    91 0.003   5.79
 8.03 Intr + 203929 204058  130  1  1   54   32   106 0.093   2.30
 8.04 Term + 208328 208447  120  1  0  106   43    74 0.500   3.17
 8.05 PlyA + 209847 209852    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr - 189228 189152   77  0  2   74   75    67 0.865   2.31
S.002 Init - 189361 189356    6  1  0   47  116    10 0.814   0.01
S.003 Term - 195307 195124  184  0  1  100   44   141 0.805   7.92


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815587f:124963368_125186018|GENSCAN_predicted_peptide_1|483_aa
MADAPPPARLLPRSLISDCCASSEQGSVGVGPAKPERNSIDINKKDIHTKTPSVGHHHQR
PKVDKTTKMWRNQSRKAENSKNQGISSPKGHSSSPATEQSWMENDFDELTEVGFRSAAPE
DGAAGVGPTGISVHVHSGGSVSMSWGTHRHGAGSLQELDYEEPDYEESSSLVTDEKGKED
LFGRGQQDQQAIHSEDKNKPFSRVQKVKFKNPLFVLMEEEEQKQLHFEGLQDILPEAQDY
FLEAQGDLLETQGDLTGIQSVKPDTQAVEMKVQKVHFKEPYSDMTDEKGREDFSLADYQC
LPPKSQDQDDIKNQNKHIKLPSSFEKWEIARGNTPGVPLAYDRYQSGLSTEFQAPLAFQS
DVDKEEDKKERQKQYLRHRRLFMDIEREQVKEQQRQKEQKKKIENLFDIVRLSSICMVEG
PLLLNILFIVRKKENTCETSSGDVKLAAVGEQMVFGYMDKFFSDDFRDFGAPVTQAVYTV
PNR

>gi568815587f:124963368_125186018|GENSCAN_predicted_CDS_1|1452_bp
atggcggacgcccctcctccagccaggctgctgcctcgcagtttaatctcggactgctgc
gctagcagtgagcaaggctctgtgggtgtgggacctgccaagccagaaaggaatagcatc
gacatcaacaaaaaggacatccacaccaaaaccccatctgtaggtcaccatcatcaaaga
ccaaaggtagataaaaccacaaagatgtggagaaaccagagcagaaaagctgaaaattct
aaaaaccagggcatctcttctccaaagggtcacagctcctcgccagcaacagaacaaagc
tggatggagaatgactttgatgagttgacagaagtaggcttcagaagtgctgcaccagag
gatggagcggcgggagtggggcctactggcatcagtgtgcatgttcactctggtggcagt
gtcagcatgtcatggggcactcacaggcatggggctggttccctccaggaacttgactat
gaggaacctgactatgaggaatcttcatctcttgtaactgatgagaaagggaaagaagat
ttgtttgggagaggccagcaggaccagcaggctatccattctgaagataagaacaaacct
ttcagcagagttcagaaagtaaaattcaaaaatccattatttgttctgatggaagaggaa
gaacaaaagcagttacattttgagggccttcaggatattctgccagaagcccaggattat
tttctagaagcccaaggtgatttgctggaaacccagggtgatttgacaggaatccagagt
gttaagccagatacccaggctgttgaaatgaaggttcagaaagtacactttaaggagcca
tactctgatatgacagatgagaaagggagagaagacttttctctggcagactatcagtgt
ttgcctcccaaatcccaggaccaggatgacatcaaaaatcagaacaagcatatcaaacta
ccctcatcttttgagaaatgggagattgcaagaggaaatactcctggagtgcccttggct
tatgataggtatcaatcaggattgagcactgaattccaagctccactggcatttcagtct
gacgtggataaagaagaagataagaaagagcgtcaaaagcagtacctgagacatagacga
cttttcatggatattgagagagaacaagttaaagaacaacaaaggcaaaaagaacaaaag
aagaaaattgaaaatttgtttgacattgtaagactaagcagtatctgcatggttgagggc
cccttgctgctgaatatcctgtttattgtgcgtaagaaggagaatacctgtgagacatca
agtggagatgtcaaattggcagctgttggggaacagatggtttttggttacatggataaa
ttctttagtgatgatttccgagattttggtgcacccgtcacccaagcagtgtacactgta
cccaataggtag

>gi568815587f:124963368_125186018|GENSCAN_predicted_peptide_2|480_aa
MTMWQSLLLSFLEASSHQAGTSVVLKVTASSLKISGYVSTDNCEILVHEPKGVPRPYAQG
QRSGVTTPPNRLGPRIMGLARTSPRIKKKRLLPVNSSHVSLFRGQGGSGNTPTNVGTLSC
SLLLESLRRLTVDNIRTRFEEQLSAYQVKRRKVEPENCMCKIRNHEKAWYIEEMVHKTFF
VADVYSIPNRRPPDFTRVTVHWEKGNNQTFRGLLDTDSELTLNPGAQNIIVVLQLKKGLM
KGYINSPALCHNLIQRDLDHFPLPQDITLVHYIDDIMLIRSSEREVANTLNLLPAPMASW
GVPCDQLAEEEKTTAWFTDGSARYAGITRKWTAAAFQSLSRTSLMDRPEGKSSQWAELRA
MHLVVHFAWKEKWPDERLYTDLWAVANGLTGWLIILDFFHHVKGRGLSSLEYTLTLDMGL
PILHTMLLPMLLYSQNALSTVMVFYTALPLTLQLKKCSSGLLLMELTGFISSPIILKQLD

>gi568815587f:124963368_125186018|GENSCAN_predicted_CDS_2|1443_bp
atgacaatgtggcagtcactcctgctctcctttctggaggcaagcagccaccaggcaggg
acttctgtggtcctgaaagtgactgcctctagcctgaagatttcagggtatgtttccact
gataattgtgagatccttgtacatgaacccaagggagtgcccaggccctacgcgcaaggt
cagagaagtggagtaacaactccaccaaacagattaggacctagaataatgggcttggct
cgtaccagccctagaatcaagaaaaagaggttacttcctgtgaattccagccacgtatcc
ctgttcaggggccagggtggcagtgggaacactcccaccaatgttggaactctttcttgc
tcgctcctgttggagagtctcagaaggcttactgtagacaacataagaactagatttgaa
gaacagcttagtgcataccaagtgaagaggagaaaggtggaaccggaaaattgcatgtgc
aaaataaggaaccatgaaaaagcatggtacattgaagaaatggtgcataagacattcttt
gtagctgatgtctacagcatccccaacaggagacctccggactttaccagggtaactgtg
cactgggaaaagggaaacaatcagacgtttcggggactactggacactgactctgagctg
acactgaatccaggggcccaaaacatcattgtggtcctccagttaaagaaggggcttatg
aaggggtatatcaactctccggctttgtgtcataatcttattcagagagaccttgatcac
tttccacttccgcaagatatcacactggtccactacattgatgacattatgctgattaga
tccagtgagcgagaagtagcaaacacactgaatttattgcctgcaccaatggcctcatgg
ggagttccctgtgatcaactggcagaggaagagaagactacggcctggttcacagatggt
tctgcacgatatgcaggcatcacccgaaagtggacagctgcagcatttcagtccctttcc
aggacatccctgatggacagacctgaagggaaatcttcccagtgggcagaacttcgagca
atgcacctggttgtgcactttgcatggaaggagaaatggccagatgagcgattatatact
gacttgtgggctgtagccaatggtttgactggatggctgattatactggacttcttccat
catgtaaagggcagaggtttgtcctcactggaatacacacttactctggatatgggtttg
cctatcctgcacacaatgcttctgccaatgcttctgtactcacagaatgccttatccacc
gtcatggtattctacacagcattacctctgactttacagctgaagaagtgcagcagtggg
ctcctgctcatggaactcactggttttatcagttcccccatcatcctgaagcagctggat
tga

>gi568815587f:124963368_125186018|GENSCAN_predicted_peptide_3|671_aa
MWRQGFYWQHHGGLQVVDFRELGSELAGTSGYHLEEGRAGILEPTRFRGLILLLTFLIYA
CYHMSRKPISIVKSRLHQNCSEQIKPINDTHSLNDTMWCSWAPFDKDNYKELLGGVDNAF
LIAYAIGMFISGVFGERLPLRYYLSAGMLLSGLFTSLFGLGYFWNIHELWYFVVIQVCNG
LVQTTGWPSVVTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGIWVNGQWGLSFIVP
GIITAVMGVITFLFLIEPGGRQHMDAPTAGLISSAQGEPAENQDNPEDPGNSPCSIRESG
LETVAKCSKGPCEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANVAHF
SAKEAGDLSTLFDVGGIIGGIVAGLVSDYTNGRATTCCVMLILAAPMMFLYNYIGQDGIA
SSIVMLIICGGLVNGPYALITTAVSADLGTHKSLKGNAKALSTVTAIIDGTGSIGAALGP
LLAGLISPTGWNNVFYMLISADVLACLLLCRLVYKEILAWKVSLSRGSGARDLQPAVPEP
PTRSMGSCGARASPTSTTPCSRAPSPIDHPRAEECERTARDWQAAPPAAPVRDPLGEASW
APESDGDVESPYVLLRDCKHTNQHPVFSSRFVSAPVDTLYLAALVGPRRTFISSSGIVNT
PIGTVYLAQGL

>gi568815587f:124963368_125186018|GENSCAN_predicted_CDS_3|2016_bp
atgtggcgccagggtttctactggcagcatcatgggggactccaggtggtggatttcagg
gagttggggtcagagctggcggggacatcaggctaccacctggaggagggcagggctgga
atcttggaacctaccaggttccgaggcctcatcctgctgctgaccttcctaatttacgcc
tgctatcacatgtccaggaagcctatcagtatcgtcaagagccgtctgcaccagaactgc
tcggagcagatcaaacccatcaatgatactcacagtctcaatgacaccatgtggtgcagc
tgggccccatttgacaaggacaactataaggagttactagggggcgtggacaacgccttc
ctcatcgcctatgccatcggcatgttcatcagtggggtttttggggagcggcttccgctc
cgttactacctctcagctggaatgctgctcagtggccttttcacctcgctctttggcctg
ggatatttctggaacatccacgagctctggtactttgtggtcatccaggtctgtaatgga
ctcgtccagaccacaggctggccctctgtggtgacctgtgttggcaactggttcgggaag
gggaagcgggggttcatcatgggcatctggaattcccacacatctgtgggcaacatcctg
ggctccctgatcgccggcatctgggtgaacgggcagtggggcctgtcgttcatcgtgcct
ggcatcattactgccgtcatgggcgtcatcaccttcctcttcctcatcgaacctggtggg
aggcagcacatggacgcacccacagcagggctcatctcctctgctcagggtgagccagct
gagaaccaggacaaccctgaggaccctgggaacagtccctgctctatcagggagagcggc
cttgagactgtggccaaatgctccaaggggccatgcgaagagcctgctgccatcagcttc
tttggggcgctccggatcccaggcgtggtcgagttctctctgtgtctgctgtttgccaag
ctggtcagttacaccttcctctactggctgcccctctacatcgccaatgtggctcacttt
agtgccaaggaggctggggacctgtctacactcttcgatgttggtggcatcataggcggc
atcgtggcagggctcgtctctgactacaccaatggcagggccaccacttgctgtgtcatg
ctcatcttggctgcccccatgatgttcctgtacaactacattggccaggacgggattgcc
agctccatagtgatgctgatcatctgtgggggcctggtcaatggcccatacgcgctcatc
accactgctgtctctgctgatctggggactcacaagagcctgaagggcaacgccaaagcc
ctgtccacggtcacggccatcattgacggcaccggctccataggtgcggctctggggcct
ctgctggctgggctcatctcccccacgggctggaacaatgtcttctacatgctcatctct
gccgacgtcctagcctgcttgctcctttgccggttagtatacaaagagatcttggcctgg
aaggtgtccctgagcagaggcagcggggctcgggacctgcagcccgcggtgcctgagcct
cccacccgctccatgggctcctgtggggcccgagcctccccgacgagtaccaccccctgc
tccagggcgcccagtcccatcgaccacccaagggctgaggagtgcgagcgcacggcgcgg
gactggcaggcagctccacctgcagccccggtgcgggatccactaggtgaagccagctgg
gctcctgagtctgatggggacgtggagagtccttatgtcctgctcagggattgtaaacac
accaatcagcaccctgtgtttagctcaaggtttgtgagtgcaccagtcgacactctgtat
ctagctgctctggtggggcctcggagaacctttatatctagctcagggattgtaaataca
cccatcggcactgtgtatctagctcaaggtttataa

>gi568815587f:124963368_125186018|GENSCAN_predicted_peptide_4|115_aa
MAGTVLGVGAGVFILALLWVAVLLLCVLLSRASGAARFSVIFLFFGAVIITSVLLLFPRA
GEFPAPEVEVKIVDDFFIGRYVLLAFLSAIFLGGLFLVLIHYVLEPIYAKPLHSY

>gi568815587f:124963368_125186018|GENSCAN_predicted_CDS_4|348_bp
atggctggcactgtgctcggagtcggtgcgggcgtgttcatcttagccctgctctgggtg
gcagtgctgctgctgtgtgtgctgctgtccagagcctccggggcggcgaggttctctgtc
atttttttattcttcggtgctgtgatcatcacatcagttctgttgcttttcccgcgagct
ggtgaattcccagccccagaagtggaagttaagattgtggatgactttttcattggccgc
tatgtcctgctggctttccttagtgccatcttccttggaggcctcttcttggttttaatc
cattatgttctggagccgatctatgccaaaccactgcactcctactga

>gi568815587f:124963368_125186018|GENSCAN_predicted_peptide_5|133_aa
MTIKDLRAHIFANSVDNACVVLQIDNARLAADDFRVKYKTELVMCLSVESNVRGLHKVTD
DTNVTRLQLETEMEALKEELLFMKKNQEKEVKGLQALIASSELTMEVNAPKSQDLSNIMA
DLPAQYDELAQKN

>gi568815587f:124963368_125186018|GENSCAN_predicted_CDS_5|402_bp
atgaccatcaaggacttgagggctcatatctttgcaaattctgtggacaatgcttgtgtt
gttctacagattgacaatgcccgtcttgctgctgatgactttagagtcaagtataagacg
gagctggtcatgtgcctgtctgtggagagcaacgtccgtgggctccacaaggtcactgat
gacaccaatgtcactcggctacagctggagacagagatggaggctctcaaggaggagctg
ctcttcatgaagaagaaccaagagaaggaagtaaaaggtctacaagccctgattgccagc
tctgagttgaccatggaggtaaatgcccccaaatctcaggacctcagcaacatcatggca
gacctcccggcccagtatgatgagctggcccagaagaactga

>gi568815587f:124963368_125186018|GENSCAN_predicted_peptide_6|119_aa
MRNLKASLENSLRWVEARYAMQMEQLSGAVLHLDSELAQAQAEGQHQAQKYEALLNIKVK
REAEIAATTTTAACWKMGRTSIVAMPWTTATLCKPSKRLSRIADDKVVSEINNTKVLRR

>gi568815587f:124963368_125186018|GENSCAN_predicted_CDS_6|360_bp
atgagaaatctgaaggccagcctggagaacagcctgaggtgggtggaggcccgctatgcc
atgcaaatggagcagctcagtggggccgtgctgcacctagattcagagctggcacaggcc
caggcagaagggcagcaccaggcccagaagtatgaggccctgctgaacatcaaggtcaag
cgggaggctgagattgccgctactactactactgccgcctgctggaagatggggaggact
tcaattgtggcgatgccctggacaacagcaactctatgcaaaccatccaaaagactgtcc
aggatagcggatgacaaagtggtgtctgagatcaacaacaccaaagttctgaggcgctga

>gi568815587f:124963368_125186018|GENSCAN_predicted_peptide_7|55_aa
MNLQHQPLPVSHSQGGQALRALQDNPRRLLLLLLLLEPSQGVLCWQAGFAHRLAE

>gi568815587f:124963368_125186018|GENSCAN_predicted_CDS_7|168_bp
atgaatctgcagcaccagcccctgccagtctcccacagccagggtggccaagccctcagg
gctctgcaggacaatcctcggcgtctgctgctgctgctgctgctgctggaaccttctcag
ggtgtcctctgctggcaggcaggcttcgcacacaggttggcagaatga

>gi568815587f:124963368_125186018|GENSCAN_predicted_peptide_8|128_aa
MPEKKGGELSQGLAIPELVFSFGGSKDPLKRGDVSMKAYKQIGFRRESQTALTGHGRRTT
HDPRVASAARGAATAAAELQGCCFVGLEFNLAWALFQVTGVFNQRCTNSQSMLWPGAACC
AQPWQRLQ

>gi568815587f:124963368_125186018|GENSCAN_predicted_CDS_8|387_bp
atgccggagaagaagggtggagagctgagccagggcctggcgatcccagagctggtgttc
tcttttgggggatccaaggatcctttgaagagaggtgatgtttccatgaaagcttataag
cagataggattcagaagggagagccagacagcccttacaggacacggaagacgcacgacc
cacgacccacgagtggcctcggcggcccggggcgcggcgactgccgccgcggagctccaa
ggctgttgttttgtaggcttggaattcaacctggcttgggcccttttccaggtcactggc
gtcttcaaccagcgttgcacaaatagccagtcaatgctgtggcctggtgctgcctgctgt
gcacagccctggcagaggctgcagtag