FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2604, 179 aa 1>>>pF1KE2604 179 - 179 aa - 179 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0262+/-0.00029; mu= 10.6423+/- 0.018 mean_var=89.3355+/-17.833, 0's: 0 Z-trim(120.0): 9 B-trim: 474 in 1/51 Lambda= 0.135694 statistics sampled from 34654 (34663) to 34654 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.406), width: 16 Scan time: 4.230 The best scores are: opt bits E(85289) NP_001305692 (OMIM: 615556) alpha-tubulin N-acetyl ( 323) 1154 235.0 9.1e-62 NP_079185 (OMIM: 615556) alpha-tubulin N-acetyltra ( 333) 1154 235.0 9.4e-62 NP_001026892 (OMIM: 615556) alpha-tubulin N-acetyl ( 409) 1154 235.0 1.1e-61 XP_005249472 (OMIM: 615556) PREDICTED: alpha-tubul ( 465) 1154 235.1 1.2e-61 NP_001177653 (OMIM: 615556) alpha-tubulin N-acetyl ( 288) 851 175.6 6e-44 NP_001305691 (OMIM: 615556) alpha-tubulin N-acetyl ( 300) 851 175.6 6.2e-44 NP_001241881 (OMIM: 615556) alpha-tubulin N-acetyl ( 310) 851 175.6 6.4e-44 XP_016866805 (OMIM: 615556) PREDICTED: alpha-tubul ( 442) 851 175.7 8.5e-44 XP_011513220 (OMIM: 615556) PREDICTED: alpha-tubul ( 266) 161 40.5 0.0026 >>NP_001305692 (OMIM: 615556) alpha-tubulin N-acetyltran (323 aa) initn: 1172 init1: 1154 opt: 1154 Z-score: 1229.9 bits: 235.0 E(85289): 9.1e-62 Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:70-242) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: NP_001 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP 160 170 180 190 200 210 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW ::::::::::::::::::::::. NP_001 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 220 230 240 250 260 270 >>NP_079185 (OMIM: 615556) alpha-tubulin N-acetyltransfe (333 aa) initn: 1172 init1: 1154 opt: 1154 Z-score: 1229.7 bits: 235.0 E(85289): 9.4e-62 Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:70-242) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: NP_079 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP 160 170 180 190 200 210 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW ::::::::::::::::::::::. NP_079 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 220 230 240 250 260 270 >>NP_001026892 (OMIM: 615556) alpha-tubulin N-acetyltran (409 aa) initn: 1154 init1: 1154 opt: 1154 Z-score: 1228.4 bits: 235.0 E(85289): 1.1e-61 Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:58-230) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: NP_001 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP 150 160 170 180 190 200 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW ::::::::::::::::::::::. NP_001 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 210 220 230 240 250 260 >>XP_005249472 (OMIM: 615556) PREDICTED: alpha-tubulin N (465 aa) initn: 1154 init1: 1154 opt: 1154 Z-score: 1227.5 bits: 235.1 E(85289): 1.2e-61 Smith-Waterman score: 1154; 98.8% identity (99.4% similar) in 173 aa overlap (1-173:58-230) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: XP_005 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP 150 160 170 180 190 200 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW ::::::::::::::::::::::. XP_005 ARKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 210 220 230 240 250 260 >>NP_001177653 (OMIM: 615556) alpha-tubulin N-acetyltran (288 aa) initn: 986 init1: 841 opt: 851 Z-score: 910.0 bits: 175.6 E(85289): 6e-44 Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:58-207) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: NP_001 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP ::::::::::::::::::::::::::::::::::: ::: NP_001 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA--------------------- 150 160 170 180 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW :::::::::::::::::::::. NP_001 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 190 200 210 220 230 240 >>NP_001305691 (OMIM: 615556) alpha-tubulin N-acetyltran (300 aa) initn: 986 init1: 841 opt: 851 Z-score: 909.8 bits: 175.6 E(85289): 6.2e-44 Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:70-219) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: NP_001 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP ::::::::::::::::::::::::::::::::::: ::: NP_001 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA--------------------- 160 170 180 190 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW :::::::::::::::::::::. NP_001 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 200 210 220 230 240 250 >>NP_001241881 (OMIM: 615556) alpha-tubulin N-acetyltran (310 aa) initn: 986 init1: 841 opt: 851 Z-score: 909.5 bits: 175.6 E(85289): 6.4e-44 Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:70-219) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: NP_001 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 40 50 60 70 80 90 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 100 110 120 130 140 150 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP ::::::::::::::::::::::::::::::::::: ::: NP_001 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA--------------------- 160 170 180 190 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW :::::::::::::::::::::. NP_001 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 200 210 220 230 240 250 >>XP_016866805 (OMIM: 615556) PREDICTED: alpha-tubulin N (442 aa) initn: 986 init1: 841 opt: 851 Z-score: 907.3 bits: 175.7 E(85289): 8.5e-44 Smith-Waterman score: 937; 85.5% identity (86.1% similar) in 173 aa overlap (1-173:58-207) 10 20 30 pF1KE2 MQSNRHVVYILKDSSARPAGKGAIIGFIKV :::::::::::::::::::::::::::::: XP_016 QQQIMTIIDELGKASAKAQNLSAPITSASRMQSNRHVVYILKDSSARPAGKGAIIGFIKV 30 40 50 60 70 80 40 50 60 70 80 90 pF1KE2 GYKKLFVLDYREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP ::::::::: :::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GYKKLFVLDDREAHNEVEPLCILDFYIHESVQRHGHGRELFQYMLQKERVEPHQLAIDRP 90 100 110 120 130 140 100 110 120 130 140 150 pF1KE2 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAP ::::::::::::::::::::::::::::::::::: ::: XP_016 SQKLLKFLNKHYNLETTVPQVNNFVIFEGFFAHQH-PPA--------------------- 150 160 170 180 160 170 pF1KE2 ARKLPPKRAEGDIKPYSSSDREWGLPQVW :::::::::::::::::::::. XP_016 -RKLPPKRAEGDIKPYSSSDREFLKVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPER 190 200 210 220 230 240 >>XP_011513220 (OMIM: 615556) PREDICTED: alpha-tubulin N (266 aa) initn: 159 init1: 159 opt: 161 Z-score: 180.5 bits: 40.5 E(85289): 0.0026 Smith-Waterman score: 161; 86.2% identity (93.1% similar) in 29 aa overlap (145-173:4-31) 120 130 140 150 160 170 pF1KE2 VIFEGFFAHQHRPPAPSLRATRHSRAAAVDPTPAAPARKLPPKRAEGDIKPYSSSDREWG :: . :::::::::::::::::::::::. XP_011 MTAPTDT-PARKLPPKRAEGDIKPYSSSDREFL 10 20 30 pF1KE2 LPQVW XP_011 KVAVEPPWPLNRAPRRATPPAHPPPRSSSLGNSPERGPLRPFVPEQELLRSLRLCPPHPT 40 50 60 70 80 90 179 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 16:58:56 2016 done: Tue Nov 8 16:58:57 2016 Total Scan time: 4.230 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]