Result of FASTA (omim) for
pF1KE2671
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE2671, 333 aa
1>>>pF1KE2671 333 - 333 aa - 333 aa
Library: /omim/omim.rfq.tfa
61265892 residues in 86068 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2132+/-0.000395; mu= 15.9636+/- 0.024
mean_var=57.7050+/-11.848, 0's: 0 Z-trim(111.0): 174 B-trim: 925 in 2/47
Lambda= 0.168837
statistics sampled from 19401 (19581) to 19401 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.601), E-opt: 0.2 (0.228), width: 16
Scan time: 7.650
The best scores are: opt bits E(86068)
NP_001241687 (OMIM: 104240) CMP-N-acetylneuraminat ( 333) 2217 548.5 7.4e-156
NP_001241686 (OMIM: 104240) CMP-N-acetylneuraminat ( 333) 2217 548.5 7.4e-156
NP_001241688 (OMIM: 104240) CMP-N-acetylneuraminat ( 332) 2182 540.0 2.7e-153
XP_016873623 (OMIM: 104240) PREDICTED: CMP-N-acety ( 329) 2167 536.3 3.4e-152
NP_006269 (OMIM: 104240) CMP-N-acetylneuraminate-b ( 329) 2167 536.3 3.4e-152
XP_011541262 (OMIM: 104240) PREDICTED: CMP-N-acety ( 415) 1731 430.1 3.9e-120
XP_011541261 (OMIM: 104240) PREDICTED: CMP-N-acety ( 462) 1731 430.2 4.3e-120
NP_006091 (OMIM: 607156) type 2 lactosamine alpha- ( 331) 700 179.0 1.3e-44
NP_001310294 (OMIM: 607156) type 2 lactosamine alp ( 331) 700 179.0 1.3e-44
NP_001258075 (OMIM: 607156) type 2 lactosamine alp ( 331) 700 179.0 1.3e-44
NP_001310281 (OMIM: 607156) type 2 lactosamine alp ( 331) 700 179.0 1.3e-44
NP_001310297 (OMIM: 607156) type 2 lactosamine alp ( 331) 700 179.0 1.3e-44
NP_001310296 (OMIM: 607156) type 2 lactosamine alp ( 354) 700 179.0 1.3e-44
NP_777629 (OMIM: 606494) CMP-N-acetylneuraminate-b ( 359) 700 179.0 1.4e-44
NP_006270 (OMIM: 606494) CMP-N-acetylneuraminate-b ( 375) 700 179.0 1.4e-44
XP_016857602 (OMIM: 606494) PREDICTED: CMP-N-acety ( 375) 700 179.0 1.4e-44
NP_001258074 (OMIM: 607156) type 2 lactosamine alp ( 384) 700 179.0 1.4e-44
NP_777624 (OMIM: 606494) CMP-N-acetylneuraminate-b ( 390) 700 179.0 1.5e-44
NP_777631 (OMIM: 606494) CMP-N-acetylneuraminate-b ( 413) 700 179.0 1.5e-44
NP_777628 (OMIM: 606494) CMP-N-acetylneuraminate-b ( 429) 700 179.0 1.6e-44
NP_777623 (OMIM: 606494) CMP-N-acetylneuraminate-b ( 444) 700 179.0 1.6e-44
NP_001257389 (OMIM: 606494) CMP-N-acetylneuraminat ( 344) 680 174.1 3.8e-43
XP_016857608 (OMIM: 606494) PREDICTED: CMP-N-acety ( 282) 676 173.1 6.3e-43
XP_011540282 (OMIM: 606494) PREDICTED: CMP-N-acety ( 379) 665 170.5 5.3e-42
XP_016857600 (OMIM: 606494) PREDICTED: CMP-N-acety ( 392) 665 170.5 5.4e-42
XP_016857601 (OMIM: 606494) PREDICTED: CMP-N-acety ( 392) 665 170.5 5.4e-42
NP_001310287 (OMIM: 607156) type 2 lactosamine alp ( 223) 662 169.6 5.5e-42
NP_001310288 (OMIM: 607156) type 2 lactosamine alp ( 223) 662 169.6 5.5e-42
XP_006710890 (OMIM: 606494) PREDICTED: CMP-N-acety ( 418) 665 170.5 5.7e-42
XP_006710888 (OMIM: 606494) PREDICTED: CMP-N-acety ( 434) 665 170.5 5.9e-42
XP_011540279 (OMIM: 606494) PREDICTED: CMP-N-acety ( 449) 665 170.5 6.1e-42
XP_011540278 (OMIM: 606494) PREDICTED: CMP-N-acety ( 472) 665 170.5 6.4e-42
XP_011540276 (OMIM: 606494) PREDICTED: CMP-N-acety ( 488) 665 170.5 6.6e-42
XP_011540275 (OMIM: 606494) PREDICTED: CMP-N-acety ( 502) 665 170.5 6.7e-42
XP_016857598 (OMIM: 606494) PREDICTED: CMP-N-acety ( 503) 665 170.5 6.7e-42
XP_016857610 (OMIM: 606494) PREDICTED: CMP-N-acety ( 268) 660 169.2 9e-42
XP_016857609 (OMIM: 606494) PREDICTED: CMP-N-acety ( 268) 660 169.2 9e-42
NP_001310289 (OMIM: 607156) type 2 lactosamine alp ( 245) 659 168.9 9.8e-42
NP_001258071 (OMIM: 607156) type 2 lactosamine alp ( 245) 659 168.9 9.8e-42
NP_001310295 (OMIM: 607156) type 2 lactosamine alp ( 245) 659 168.9 9.8e-42
XP_016857605 (OMIM: 606494) PREDICTED: CMP-N-acety ( 340) 649 166.6 7.1e-41
XP_011540285 (OMIM: 606494) PREDICTED: CMP-N-acety ( 340) 649 166.6 7.1e-41
XP_016857603 (OMIM: 606494) PREDICTED: CMP-N-acety ( 341) 641 164.6 2.8e-40
XP_016857604 (OMIM: 606494) PREDICTED: CMP-N-acety ( 341) 641 164.6 2.8e-40
XP_006710891 (OMIM: 606494) PREDICTED: CMP-N-acety ( 341) 641 164.6 2.8e-40
XP_011540289 (OMIM: 606494) PREDICTED: CMP-N-acety ( 327) 625 160.7 4e-39
XP_011540290 (OMIM: 606494) PREDICTED: CMP-N-acety ( 327) 625 160.7 4e-39
XP_016860688 (OMIM: 604402,609056) PREDICTED: lact ( 390) 562 145.4 1.9e-34
XP_016860690 (OMIM: 604402,609056) PREDICTED: lact ( 390) 562 145.4 1.9e-34
XP_016860689 (OMIM: 604402,609056) PREDICTED: lact ( 390) 562 145.4 1.9e-34
>>NP_001241687 (OMIM: 104240) CMP-N-acetylneuraminate-be (333 aa)
initn: 2217 init1: 2217 opt: 2217 Z-score: 2919.2 bits: 548.5 E(86068): 7.4e-156
Smith-Waterman score: 2217; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KE2 MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
250 260 270 280 290 300
310 320 330
pF1KE2 LKSMAGSGHNVSQEALAIKRMLEMGAIKNLTSF
:::::::::::::::::::::::::::::::::
NP_001 LKSMAGSGHNVSQEALAIKRMLEMGAIKNLTSF
310 320 330
>>NP_001241686 (OMIM: 104240) CMP-N-acetylneuraminate-be (333 aa)
initn: 2217 init1: 2217 opt: 2217 Z-score: 2919.2 bits: 548.5 E(86068): 7.4e-156
Smith-Waterman score: 2217; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)
10 20 30 40 50 60
pF1KE2 MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
250 260 270 280 290 300
310 320 330
pF1KE2 LKSMAGSGHNVSQEALAIKRMLEMGAIKNLTSF
:::::::::::::::::::::::::::::::::
NP_001 LKSMAGSGHNVSQEALAIKRMLEMGAIKNLTSF
310 320 330
>>NP_001241688 (OMIM: 104240) CMP-N-acetylneuraminate-be (332 aa)
initn: 2182 init1: 2182 opt: 2182 Z-score: 2873.1 bits: 540.0 E(86068): 2.7e-153
Smith-Waterman score: 2182; 100.0% identity (100.0% similar) in 327 aa overlap (7-333:6-332)
10 20 30 40 50 60
pF1KE2 MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MCPAGWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE2 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE2 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
240 250 260 270 280 290
310 320 330
pF1KE2 LKSMAGSGHNVSQEALAIKRMLEMGAIKNLTSF
:::::::::::::::::::::::::::::::::
NP_001 LKSMAGSGHNVSQEALAIKRMLEMGAIKNLTSF
300 310 320 330
>>XP_016873623 (OMIM: 104240) PREDICTED: CMP-N-acetylneu (329 aa)
initn: 2002 init1: 2002 opt: 2167 Z-score: 2853.4 bits: 536.3 E(86068): 3.4e-152
Smith-Waterman score: 2167; 98.5% identity (98.5% similar) in 333 aa overlap (1-333:1-329)
10 20 30 40 50 60
pF1KE2 MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
XP_016 MVSKSRWKLLAMLALVLVVMVWYSISREDS----FYFPIPEKKEPCLQGEAESKASKLFG
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE2 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE2 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
240 250 260 270 280 290
310 320 330
pF1KE2 LKSMAGSGHNVSQEALAIKRMLEMGAIKNLTSF
:::::::::::::::::::::::::::::::::
XP_016 LKSMAGSGHNVSQEALAIKRMLEMGAIKNLTSF
300 310 320
>>NP_006269 (OMIM: 104240) CMP-N-acetylneuraminate-beta- (329 aa)
initn: 2002 init1: 2002 opt: 2167 Z-score: 2853.4 bits: 536.3 E(86068): 3.4e-152
Smith-Waterman score: 2167; 98.5% identity (98.5% similar) in 333 aa overlap (1-333:1-329)
10 20 30 40 50 60
pF1KE2 MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
NP_006 MVSKSRWKLLAMLALVLVVMVWYSISREDS----FYFPIPEKKEPCLQGEAESKASKLFG
10 20 30 40 50
70 80 90 100 110 120
pF1KE2 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE2 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE2 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE2 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
240 250 260 270 280 290
310 320 330
pF1KE2 LKSMAGSGHNVSQEALAIKRMLEMGAIKNLTSF
:::::::::::::::::::::::::::::::::
NP_006 LKSMAGSGHNVSQEALAIKRMLEMGAIKNLTSF
300 310 320
>>XP_011541262 (OMIM: 104240) PREDICTED: CMP-N-acetylneu (415 aa)
initn: 1728 init1: 1728 opt: 1731 Z-score: 2277.9 bits: 430.1 E(86068): 3.9e-120
Smith-Waterman score: 1731; 98.5% identity (98.5% similar) in 262 aa overlap (1-262:1-262)
10 20 30 40 50 60
pF1KE2 MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
::::::::::::::::: :
XP_011 ADKLLSLPMQQPRKIKQDAEFGQSRSCQSSAEWQLNPGRALPVLRKACNCVFTMLFQDSQ
250 260 270 280 290 300
>>XP_011541261 (OMIM: 104240) PREDICTED: CMP-N-acetylneu (462 aa)
initn: 1728 init1: 1728 opt: 1731 Z-score: 2277.1 bits: 430.2 E(86068): 4.3e-120
Smith-Waterman score: 1731; 98.5% identity (98.5% similar) in 262 aa overlap (1-262:1-262)
10 20 30 40 50 60
pF1KE2 MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVSKSRWKLLAMLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE2 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NYSRDQPIFLRLEDYFWVKTPSAYELPYGTKGSEDLLLRVLAITSSSIPKNIQSLRCRRC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VVVGNGHRLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNPDTLLVLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 ADKLLSLPMQQPRKIKQKPTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQIT
::::::::::::::::: :
XP_011 ADKLLSLPMQQPRKIKQDAEFGQSRSCQSSAEWQLNPGRALPVLRKACNCVFTMLFQDSQ
250 260 270 280 290 300
>>NP_006091 (OMIM: 607156) type 2 lactosamine alpha-2,3- (331 aa)
initn: 364 init1: 364 opt: 700 Z-score: 922.2 bits: 179.0 E(86068): 1.3e-44
Smith-Waterman score: 700; 40.9% identity (68.9% similar) in 296 aa overlap (42-331:41-329)
20 30 40 50 60 70
pF1KE2 MLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFGNYSRDQPIFLR
: .:::. : :: : . . .: ::
NP_006 SAVFLYYVLHCILWGTNVYWVAPVEMKRRNKIQPCLSKPAF--ASLL--RFHQFHP-FLC
20 30 40 50 60
80 90 100 110 120
pF1KE2 LEDYFWVKT---PSAYELPYGTKGSEDLLLRVLA-ITSSSIPKNIQSLRCRRCVVVGNGH
:. . . . ..:::: . : . . .:. . : .. ..... :..:::::::
NP_006 AADFRKIASLYGSDKFDLPYGMRTSAEYFRLALSKLQSCDLFDEFDNIPCKKCVVVGNGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 RLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVENNPDTLL
:.:..::. :..:::.::.::.:: :.: .:: .::.:::::::. :: ..:.:.: .
NP_006 VLKNKTLGEKIDSYDVIIRMNNGPVLGHEEEVGRRTTFRLFYPESVFSDP-IHNDPNTTV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 VLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIAADKLLSL
.:.::: :..:. .: : .::::.: : .: :::::.::... :: .:: .
NP_006 ILTAFKPHDLRWLLELLMGDKINTNGFWKKPALNLIYKPYQIRILDPFIIRTAAYELLHF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PMQQPRKIKQK-PTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQITLKSMAG
: :.. : : ::::..:::::...: ::.::: : . . :. .::: . :.. :
NP_006 PKVFPKNQKPKHPTTGIIAITLAFYICHEVHLAGFKY-NFSDLKSPLHYYGNATMSLMNK
250 260 270 280 290 300
310 320 330
pF1KE2 SG-HNVSQEALAIKRMLEMGAIKNLTSF
.. :::. : : .: ..: . . :::
NP_006 NAYHNVTAEQLFLKDIIEKNLVINLTQD
310 320 330
>>NP_001310294 (OMIM: 607156) type 2 lactosamine alpha-2 (331 aa)
initn: 364 init1: 364 opt: 700 Z-score: 922.2 bits: 179.0 E(86068): 1.3e-44
Smith-Waterman score: 700; 40.9% identity (68.9% similar) in 296 aa overlap (42-331:41-329)
20 30 40 50 60 70
pF1KE2 MLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFGNYSRDQPIFLR
: .:::. : :: : . . .: ::
NP_001 SAVFLYYVLHCILWGTNVYWVAPVEMKRRNKIQPCLSKPAF--ASLL--RFHQFHP-FLC
20 30 40 50 60
80 90 100 110 120
pF1KE2 LEDYFWVKT---PSAYELPYGTKGSEDLLLRVLA-ITSSSIPKNIQSLRCRRCVVVGNGH
:. . . . ..:::: . : . . .:. . : .. ..... :..:::::::
NP_001 AADFRKIASLYGSDKFDLPYGMRTSAEYFRLALSKLQSCDLFDEFDNIPCKKCVVVGNGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 RLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVENNPDTLL
:.:..::. :..:::.::.::.:: :.: .:: .::.:::::::. :: ..:.:.: .
NP_001 VLKNKTLGEKIDSYDVIIRMNNGPVLGHEEEVGRRTTFRLFYPESVFSDP-IHNDPNTTV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 VLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIAADKLLSL
.:.::: :..:. .: : .::::.: : .: :::::.::... :: .:: .
NP_001 ILTAFKPHDLRWLLELLMGDKINTNGFWKKPALNLIYKPYQIRILDPFIIRTAAYELLHF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PMQQPRKIKQK-PTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQITLKSMAG
: :.. : : ::::..:::::...: ::.::: : . . :. .::: . :.. :
NP_001 PKVFPKNQKPKHPTTGIIAITLAFYICHEVHLAGFKY-NFSDLKSPLHYYGNATMSLMNK
250 260 270 280 290 300
310 320 330
pF1KE2 SG-HNVSQEALAIKRMLEMGAIKNLTSF
.. :::. : : .: ..: . . :::
NP_001 NAYHNVTAEQLFLKDIIEKNLVINLTQD
310 320 330
>>NP_001258075 (OMIM: 607156) type 2 lactosamine alpha-2 (331 aa)
initn: 364 init1: 364 opt: 700 Z-score: 922.2 bits: 179.0 E(86068): 1.3e-44
Smith-Waterman score: 700; 40.9% identity (68.9% similar) in 296 aa overlap (42-331:41-329)
20 30 40 50 60 70
pF1KE2 MLALVLVVMVWYSISREDRYIELFYFPIPEKKEPCLQGEAESKASKLFGNYSRDQPIFLR
: .:::. : :: : . . .: ::
NP_001 SAVFLYYVLHCILWGTNVYWVAPVEMKRRNKIQPCLSKPAF--ASLL--RFHQFHP-FLC
20 30 40 50 60
80 90 100 110 120
pF1KE2 LEDYFWVKT---PSAYELPYGTKGSEDLLLRVLA-ITSSSIPKNIQSLRCRRCVVVGNGH
:. . . . ..:::: . : . . .:. . : .. ..... :..:::::::
NP_001 AADFRKIASLYGSDKFDLPYGMRTSAEYFRLALSKLQSCDLFDEFDNIPCKKCVVVGNGG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE2 RLRNSSLGDAINKYDVVIRLNNAPVAGYEGDVGSKTTMRLFYPESAHFDPKVENNPDTLL
:.:..::. :..:::.::.::.:: :.: .:: .::.:::::::. :: ..:.:.: .
NP_001 VLKNKTLGEKIDSYDVIIRMNNGPVLGHEEEVGRRTTFRLFYPESVFSDP-IHNDPNTTV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE2 VLVAFKAMDFHWIETILSDKKRVRKGFWKQPPLIWDVNPKQIRILNPFFMEIAADKLLSL
.:.::: :..:. .: : .::::.: : .: :::::.::... :: .:: .
NP_001 ILTAFKPHDLRWLLELLMGDKINTNGFWKKPALNLIYKPYQIRILDPFIIRTAAYELLHF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE2 PMQQPRKIKQK-PTTGLLAITLALHLCDLVHIAGFGYPDAYNKKQTIHYYEQITLKSMAG
: :.. : : ::::..:::::...: ::.::: : . . :. .::: . :.. :
NP_001 PKVFPKNQKPKHPTTGIIAITLAFYICHEVHLAGFKY-NFSDLKSPLHYYGNATMSLMNK
250 260 270 280 290 300
310 320 330
pF1KE2 SG-HNVSQEALAIKRMLEMGAIKNLTSF
.. :::. : : .: ..: . . :::
NP_001 NAYHNVTAEQLFLKDIIEKNLVINLTQD
310 320 330
333 residues in 1 query sequences
61265892 residues in 86068 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Feb 2 14:37:25 2017 done: Thu Feb 2 14:37:27 2017
Total Scan time: 7.650 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]