FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6682, 314 aa
  1>>>pF1KE6682     314 - 314 aa - 314 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.2646+/-0.00105; mu= -1.3625+/- 0.063
 mean_var=214.5112+/-45.784, 0's: 0 Z-trim(109.8): 37  B-trim: 255 in 2/51
 Lambda= 0.087569
 statistics sampled from 11252 (11260) to 11252 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.668), E-opt: 0.2 (0.337), width:  16
 Scan time:  1.220

The best scores are:                                      opt bits E(33420)
CCDS5622.1 AKAP9 gene_id:10142|Hs109|chr7          (3907) 1974 262.5 3.9e-69


>>CCDS5622.1 AKAP9 gene_id:10142|Hs109|chr7               (3907 aa)
 initn: 1974 init1: 1974 opt: 1974  Z-score: 1354.9  bits: 262.5 E(33420): 3.9e-69
Smith-Waterman score: 1974; 100.0% identity (100.0% similar) in 310 aa overlap (1-310:1-310)

               10        20        30        40        50        60
pF1KE6 MEDEERQKKLEAGKAKLAQFRQRKAQSDGQSPSKKQKKKRKTSSSKHDVSAHHDLNIDQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MEDEERQKKLEAGKAKLAQFRQRKAQSDGQSPSKKQKKKRKTSSSKHDVSAHHDLNIDQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 QCNEMYINSSQRVESTVIPESTIMRTLHSGEITSHEQGFSVELESEISTTADDCSSEVNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QCNEMYINSSQRVESTVIPESTIMRTLHSGEITSHEQGFSVELESEISTTADDCSSEVNG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE6 CSFVMRTGKPTNLLREEEFGVDDSYSEQGAQDSPTHLEMMESELAGKQHEIEELNRELEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CSFVMRTGKPTNLLREEEFGVDDSYSEQGAQDSPTHLEMMESELAGKQHEIEELNRELEE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE6 MRVTYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MRVTYGTEGLQQLQEFEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE6 QFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QFQQLQASETLRNSTHSSTAADLLQAKQQILTHQQQLEEQDHLLEDYQKKKEDFTMQISF
              250       260       270       280       290       300

              310                                                  
pF1KE6 LQEKIKVYEMVCLF                                              
       ::::::::::                                                  
CCDS56 LQEKIKVYEMEQDKKVENSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLG
              310       320       330       340       350       360




314 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Jul 16 16:00:33 2019 done: Tue Jul 16 16:00:33 2019
 Total Scan time:  1.220 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]