FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2763, 118 aa
  1>>>pF1KE2763     118 - 118 aa - 118 aa
Library: human.CCDS.faa
  18921897 residues in 33420 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9592+/-0.00054; mu= 11.7187+/- 0.033
 mean_var=54.3257+/-11.137, 0's: 0 Z-trim(112.9): 2  B-trim: 793 in 1/49
 Lambda= 0.174009
 statistics sampled from 13802 (13803) to 13802 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.795), E-opt: 0.2 (0.413), width:  16
 Scan time:  0.940

The best scores are:                                      opt bits E(33420)
CCDS10911.1 FA2H gene_id:79152|Hs109|chr16         ( 372)  786 204.5 3.9e-53


>>CCDS10911.1 FA2H gene_id:79152|Hs109|chr16              (372 aa)
 initn: 786 init1: 786 opt: 786  Z-score: 1067.6  bits: 204.5 E(33420): 3.9e-53
Smith-Waterman score: 786; 98.2% identity (99.1% similar) in 113 aa overlap (6-118:260-372)

                                        10        20        30     
pF1KE2                          MPKPLHLQAPFDGSRLVFPPVPASLVIGVFYLCMQ
                                     : .:::::::::::::::::::::::::::
CCDS10 EYLIHRFLFHMKPPSDSYYLIMLHFVMHGQHHKAPFDGSRLVFPPVPASLVIGVFYLCMQ
     230       240       250       260       270       280         

          40        50        60        70        80        90     
pF1KE2 LILPEAVGGTVFAGGLLGYVLYDMTHYYLHFGSPHKGSYLYSLKAHHVKHHFAHQKSGFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LILPEAVGGTVFAGGLLGYVLYDMTHYYLHFGSPHKGSYLYSLKAHHVKHHFAHQKSGFG
     290       300       310       320       330       340         

         100       110        
pF1KE2 ISTKLWDYCFHTLTPEKPHLKTQ
       :::::::::::::::::::::::
CCDS10 ISTKLWDYCFHTLTPEKPHLKTQ
     350       360       370  




118 residues in 1 query   sequences
18921897 residues in 33420 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Oct  3 17:24:22 2019 done: Thu Oct  3 17:24:22 2019
 Total Scan time:  0.940 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]