GENSCAN 1.0	Date run:  8-Nov-116	Time: 14:32:39

Sequence gi568815579r:29602846_29808413 : 205568 bp : 50.33% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3199   3480  282  2  0   91   63   149 0.612  10.09
 1.02 Intr +   5812   5864   53  2  2  107   82    44 0.996   4.33
 1.03 Intr +   7564   7787  224  0  2   76   76   436 0.998  38.13
 1.04 Intr +   9017   9094   78  2  0   83  113    11 0.761   1.77
 1.05 Intr +   9272   9333   62  2  2   91   91    24 0.769   1.38
 1.06 Intr +  11026  11127  102  2  0  107   95    46 0.925   7.35
 1.07 Intr +  12399  12485   87  1  0  107    5    82 0.251   1.74
 1.08 Intr +  13879  14022  144  2  0   53   30   106 0.008   1.55
 1.09 Intr +  14559  14604   46  1  1  111   80    20 0.011   0.97
 1.10 Intr +  18995  19100  106  2  1   39   61    67 0.274  -0.68
 1.11 Intr +  21402  21553  152  2  2   84   75   182 0.801  15.46
 1.12 Intr +  38838  39036  199  0  1   13   -2   241 0.096   6.95
 1.13 Intr +  54986  55088  103  1  1   73   64    42 0.016   0.05
 1.14 Intr +  68766  68814   49  1  1   76   74    45 0.059  -0.36
 1.15 Intr +  70979  71807  829  2  1  112  -11  1733 0.151 157.21
 1.16 Intr +  71831  72022  192  1  0   71   95    41 0.311   2.79
 1.17 Intr +  74355  74539  185  2  2  136   40    43 0.163   2.89
 1.18 Term +  79365  79590  226  0  1   56   55   133 0.295   3.05
 1.19 PlyA +  82293  82298    6                               1.05

 2.00 Prom +  84787  84826   40                              -7.46
 2.01 Init +  87066  87152   87  2  0   70  100   108 0.616  10.84
 2.02 Term +  94214  94897  684  1  0  -15   47   300 0.509   9.24
 2.03 PlyA +  95689  95694    6                               1.05

 3.14 PlyA -  96762  96757    6                               1.05
 3.13 Term - 100132  99867  266  2  2  102   47   505 0.996  43.47
 3.12 Intr - 105578 105409  170  1  2   58  111   205 0.210  19.39
 3.11 Intr - 112454 112280  175  0  1    3  103   108 0.194   2.80
 3.10 Intr - 120459 120366   94  0  1  101   98    67 0.593   8.54
 3.09 Intr - 126004 125888  117  1  0   49   47    88 0.399   1.46
 3.08 Intr - 131648 131565   84  2  0   49   29   119 0.007   2.12
 3.07 Intr - 139037 138980   58  1  1   44   98    39 0.005  -0.61
 3.06 Intr - 142032 141917  116  0  2   89   69    32 0.001   0.65
 3.05 Intr - 158536 158419  118  0  1   69   52   102 0.246   5.17
 3.04 Intr - 174933 174804  130  1  1  123   30    69 0.004   4.35
 3.03 Intr - 183567 183447  121  0  1   93   82   -20 0.001  -2.03
 3.02 Intr - 189455 189351  105  2  0   48   80    96 0.089   5.21
 3.01 Init - 204582 204367  216  0  0   91   81    89 0.650   7.29

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term -  28118  27996  123  2  0   48   47   136 0.862   3.88
S.002 Intr + 138222 138292   71  0  2   49   77    51 0.832  -1.07
S.003 Term + 138478 138593  116  2  2   95   53    76 0.905   3.53
S.004 Term + 179524 179615   92  2  2   97   45    70 0.914   1.48


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579r:29602846_29808413|GENSCAN_predicted_peptide_1|1039_aa
XLSKHSTCLYPNPTACPPKDAGGKDPRKRAHSSPLLSNTAYDVLSSRIPFQAHAPPRWAS
AGDVTHSAISELRESATAAASASSESAGSGPRMKSVIYHALSQKEANDSDVQPSGAQRAE
AFVRAFLKRSTPRMSPQAREDQLQRKAVVLEYFTRHKRKEKKKKAKGLSARQRRELRLFD
IKPEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAIISVTKSKCP
SYVGITGILLQETKHIFKIITKEDRLKVIPKLNCVFTVETDGFISYIYGSKFQLRSRCSE
AAQVLSPKQHAVTAASDEHTHGLGTWSPSTLPPRTRAPAQRLPCGYTVALMAHPGVISPS
PQCNHICLFHIIFFHWNVSCSDAGTLPMVFAAITIPSALKGGSPTRRVEMAPAVQAAEQG
AVDKASVAKEAGAAAEVFSGEKGAGRARRCQKRKKEKQKRRRRRRKEEGGEGGGKKKKRK
KRKRRKQKKWKKKMEEEKEEEKEKEGKERRVLQGVGRCWLEASVSPMGFSGGLHGPLHDS
AASFPWSLQYTAKISKLKIAVLTRQLETMVDHLANTEINSQRIAAVESCFGASGQPLALP
GRVLLGEGVLTKECRKKAKPRIFFLFNDILVYGSIVLNKRKYRSQHIIPLEEVTLELLPE
TLQAKNRWMIKTAKKSFVVSAASATERQEWISHIEECVRRQLRATGRPPSTEHAAPWIPD
KATDICMRCTQTRFSALTRRHHCRKCGFVVCAECSRQRFLLPRLSPKPVRVCSLCYRELA
AQQRQEEAEEQGAGSPGQPAHLARPICGASSGDDDDSDEDKEGSRDGDWPSSVEFYASGL
TPGLQNICPQASSTAQAPKRAAPEAAQGSGTPSHGGRCSGGEWLFLDSQCLFAGHCVLMA
SLQGWNRTAAAPSPKVLGPVRAHGLGWPRTFAEPSHLRSCSRTSWAMPAAGDTAGSETNK
ARTACCPRQHLGYGDLGSGILEQHTGTLRTVCKLLIPLKYQNAFGFQQPPDLLGAPTMKQ
RPLNLACPSHNHLLAQPNP

>gi568815579r:29602846_29808413|GENSCAN_predicted_CDS_1|3120_bp
ngccttagcaagcattccacatgcctttaccccaaccctactgcctgtcccccaaaagat
gcaggcggaaaagaccccaggaagcgagcccactcctccccactgctcagcaacaccgcc
tacgacgttctcagtagccgaatccctttccaggcgcatgcgcccccgaggtgggcgagc
gccggtgatgtcacgcatagcgccatctccgagctccgagagtctgcgacagcagctgcc
agtgcgtcatcagagagcgccggaagcggtccgagaatgaagagtgtgatctaccatgca
ttgtctcagaaagaggcgaatgactccgatgtccagccttcaggagcacagcgggccgag
gccttcgtgagggccttcctgaagcgcagcacgccccgcatgagcccgcaggcccgcgag
gaccagctgcagcgcaaggcggtggtcctggagtacttcacccgccacaagcgcaaggag
aagaagaagaaagccaaaggcctctctgccaggcaaaggagggagctgcggctctttgac
attaaaccagagcagcagagatacagccttttcctccctctccatgaactctggaaacag
tacatcagggacctgtgcagtgggctcaagccagacacgcagccacagatgattcaggcc
aagctcttaaaggcagatcttcacggggctattatttcagtgacaaaatccaaatgcccc
tcttatgtgggtattacaggaatccttctacaggaaacaaagcacattttcaaaattatc
accaaagaagaccgcctgaaagttatccccaagctaaactgcgtgttcactgtggaaacc
gatggctttatttcctacatttacgggagcaaattccagcttcggtcaaggtgttctgag
gcagctcaagtgctctcccccaagcagcacgcagtcaccgctgccagtgatgaacacacg
cacgggctaggcacatggagcccaagcacactgccacctcggacacgggccccggcccag
cgactgccttgtggatacactgttgccctcatggcccacccaggggtcatatctcccagt
ccccagtgcaaccatatctgcctgtttcatatcattttcttccactggaatgtgagctgc
tcggacgctgggacactgcccatggtgttcgccgccataaccattcccagtgccctgaag
ggtggcagccccactaggcgagtggagatggctccagccgtccaagctgctgaacaaggg
gctgtggacaaggccagcgtggccaaggaggcaggggctgcagctgaggtcttctcaggg
gaaaagggagcaggcagagcaagacgctgtcagaaaaggaagaaagagaagcagaagagg
aggaggaggaggagaaaagaagaaggaggtgaaggaggaggaaagaagaaaaagaggaag
aagaggaagaggaggaagcagaagaagtggaagaagaagatggaggaggagaaagaggag
gagaaggagaaggaggggaaagaaaggagagttttgcaaggggttggtcgctgttggctg
gaggcctcagtgtctcccatgggcttctccggagggctgcatggacctcttcatgactca
gcagccagcttcccctggagtttgcagtatacagccaagatcagcaagctaaaaatagca
gttcttacccgccagctggagacgatggtggaccacttggccaacacggagatcaacagc
cagcgcatcgcggcagtggagagctgcttcggggcctcggggcagccgctggcgctgcca
ggccgagtgctgctgggcgagggcgtgctgaccaaagagtgccgcaagaaggccaagccg
cgcatcttcttcctctttaacgacatcctggtgtatggcagcatcgtgctcaacaagcgc
aagtaccgcagccagcacatcatccccctggaggaggtcacactggagctgttgccggag
acgctgcaggccaagaaccgctggatgatcaagacggccaagaagtcctttgtggtgtcg
gccgcctccgctacggagcgccaggaatggattagccacatcgaggagtgcgtgcggcgg
caactgagggccacgggccgcccgcccagcacggagcacgcggcaccctggatccccgac
aaggccacggacatctgcatgcgctgcacgcagacgcgcttctctgccctcacgaggcgc
caccactgccgcaagtgcggcttcgtggtctgcgctgagtgctcgcgccagcgcttcctg
ctcccgcgcctgtcccccaagcccgtgcgcgtctgcagcctctgctaccgcgaactggcc
gcccagcagcggcaggaggaggcggaggagcagggcgcggggtccccagggcagccagcc
cacctggcccggcccatctgcggagcgtccagtggagatgacgatgactccgacgaggac
aaggagggcagcagggacggcgactggcccagcagcgtggagttctacgcctcggggctg
acccccggcctgcagaacatctgtccccaagccagctccactgcccaggcccccaagagg
gcagctccagaagctgcccagggctccgggaccccatcccatggtggcaggtgcagcggt
ggggagtggctctttctggactcccagtgcctttttgctggacactgtgtccttatggct
tcactgcagggctggaacagaactgctgctgccccaagtcccaaggtgttagggcctgta
agggcccacggcttggggtggcccaggaccttcgcagagccttcacacctgcggtcttgc
tcccgcaccagctgggccatgccagctgctggggacaccgctgggagtgagacaaacaag
gcccgcacagcatgctgcccacggcagcacctgggctatggggacctgggctccgggatt
ctggagcagcacactgggacacttcgtacagtttgcaaattactaatacccttaaaatac
caaaatgcctttggatttcagcagccaccagacctcctgggggcccccaccatgaagcag
aggcctttgaacctcgcctgccccagccataaccacttgctggcacaacccaatccctga

>gi568815579r:29602846_29808413|GENSCAN_predicted_peptide_2|256_aa
MLLAIIPYFPGIIASNMAAPSELSDEELKAPDTRHPDTWTPNTQTPRHSDTQTPRNLTPR
HPDTQTPRNLTPRHPDTQTPDTQTPRNLTARHPDTQTPDTQTPGHSDTQTLRHPDIQTPD
TQKPDTPPPGHPDILPPEHPATQSLGHLDTQPPHHPDTLPLQYPDTPTPRHPDTPLPGHL
DNPPPGHLDTQTPRPSATQTPCHSDTQTPHHLDTWTPGHPDTRTLRHLTTQTPRNLTPRN
LDTRTPRHLTPRHTDT

>gi568815579r:29602846_29808413|GENSCAN_predicted_CDS_2|771_bp
atgttgctggcaattatcccgtattttcctgggataattgccagcaacatggcagccccc
tctgagcttagtgatgaagaattgaaggcacctgacaccagacacccagacacctggaca
cccaacactcagacacccagacactcagatacccagacacccagaaacctgacacccaga
cacccggatacccagacacccagaaacctgacacccagacacccagatacccagacaccc
gacacccagacacccagaaacctgacagccagacacccggatacccagacacccgacacc
cagacacccggacactcagacacccagacactcagacacccagacatccagacacctgat
acccagaaacctgacaccccaccacccggacacccagacatcctgccacctgaacaccct
gccactcagtcacttggacacctggatactcagccaccccaccatccagataccctgcca
ctccaatacccagacaccccaacccccagacacccagacactccactacctggacacctg
gacaacccaccacctggacacctggacacccaaacacccagaccctctgccacccagaca
ccctgccactcagacacccagacaccccaccacctggacacctggacacccggacaccca
gacacccggacactcagacacctcaccacccagacaccgagaaacctgacacccagaaac
ctggacacccggacacccagacacctgacaccaagacacacagacacttga

>gi568815579r:29602846_29808413|GENSCAN_predicted_peptide_3|589_aa
MNRTRLSTTECLRPSAREREHGKALEAWLLSSLGGTICLHRPPSQPGKGPTHAPQGLVPA
QNQRTLLCKATKRGATLQDVTVARQLSAVEAGPEGLQLEAMAVGFLQEGLQHFPKRPRAP
SAGCAQLFTTLAGLTLGSLLPGPVCPAGGSGWSRALGHMDIRDALAVGARGAESRAFQCQ
LQAMALPHASVLSPRVMTVSRCRQPCQAPPQTALRDSPERQSQCRILQEEDMSLSLSDAL
DLVGCLPQAEHGLPERRETILCGDHSEQCSEYIFVWVEAHLHTLELWRQRSYGSKVPLEA
AGLQEHQDDLCQGYARAPGEPRRYIEPSLATVDPTVKVCGTNTLCYRDFGEVPEKGPEPA
PPSAVPDSEPGSVHYQEHGDTVATREGPAQPEGGTEGGASAGAATKACATLRGAGELGGE
PGACQARAAAASDRRARRVDLRSPRPATMTIMVEDIMKLLCSLSGERKMKAAVKHSGKGA
LVTGAMAFVGGLVGGPPGLAVGGAVGGLLGAWMTSGQFKPVPQILMELPPAEQQRLFNEA
AAIIRHLEWTDAVQLTALVMGSEALQQQLLAMLVNYVTKELRAEIQYDD

>gi568815579r:29602846_29808413|GENSCAN_predicted_CDS_3|1770_bp
atgaacaggaccaggctgtcaaccacagagtgtctgcggcccagcgccagggaacgtgag
catgggaaagccctggaggcttggctcctgtcctccctgggcgggacaatctgcctgcac
aggccccccagccagccaggcaagggcccaacccatgctccccaaggcttggttcctgct
cagaaccagcgcacactgctgtgtaaagccaccaagcgtggggccaccttgcaggatgtg
actgtggcgaggcagctgtctgcagtggaggcaggcccagaagggctacagctggaggct
atggcagtgggcttcctgcaggaaggcctccagcattttcccaagcggccaagagcaccc
tctgctggatgtgcacagctgttcaccaccttagcagggctgactctggggagcctactc
cctggccctgtttgccctgcaggagggagtggctggagccgtgctctgggtcacatggac
attcgtgatgccctcgctgtaggtgcccgaggtgctgagtccagggccttccagtgccag
cttcaagcgatggccctgccacatgcctctgtactaagtccccgtgtgatgacggtgagc
aggtgccggcagccatgccaagcacctccccagactgctctgcgggactctcctgagagg
cagtcccagtgccgcatcttacaggaggaggacatgtccctgtcactcagcgacgcttta
gatcttgttggctgccttccccaagcagaacatgggctccctgagaggagggagaccatt
ctctgtggtgaccattcagagcagtgtagtgagtacatctttgtctgggtagaagcacat
cttcacactctggagctatggaggcaaagaagctatggctccaaggttcctctggaagca
gcaggcctacaagaacatcaggatgacctgtgccaaggctatgccagggcacctggtgag
ccacgccgctacattgaaccctcactggccactgtagacccaacagtcaaagtctgtggc
accaacaccttgtgttatagagactttggggaagtccccgagaagggcccagaacccgcc
cctccatcagcagttccagactctgagcctgggagcgtgcattaccaggaacatggagac
acggtggctacacgtgaaggcccggcgcagccggaaggtgggacggagggcggggccagc
gccggggccgccaccaaggcctgcgcgaccctccgcggggctggggagctgggcggggag
cccggggcctgccaggcccgggctgcagccgcgtctgatcgccgagcgcgccgcgtagac
ctccgctcccccaggcccgccacgatgactatcatggtggaggacatcatgaagctgctg
tgctccctttctggggagaggaagatgaaggcggctgtcaagcactctgggaagggtgcc
ctggtcacaggggccatggccttcgtcgggggtttggtgggcggcccaccgggactcgcc
gttgggggggctgtcggggggctgttaggtgcctggatgacaagtggacagtttaagccg
gttcctcagatcctaatggagctgccccctgccgagcaacagaggctctttaacgaagcc
gcagccatcatcaggcacctggagtggacggacgccgtgcagctgaccgcgctggtcatg
ggcagcgaggccctgcagcagcagctgctggccatgctggtgaactacgtcaccaaggag
ctgcgggccgagatccagtatgatgactag