GENSCAN 1.0	Date run:  8-Nov-116	Time: 07:33:38

Sequence gi568815596r:199833070_200055470 : 222401 bp : 39.09% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.00 Prom +    505    544   40                              -3.65
 1.01 Init +   5456   5700  245  1  2   47   83   211 0.622  13.75
 1.02 Term +   6843   6981  139  0  1   77   55   122 0.994   4.25
 1.03 PlyA +   7668   7673    6                               1.05

 2.07 PlyA -   9391   9386    6                               1.05
 2.06 Term -  11463  11330  134  1  2   69   36   141 0.932   4.27
 2.05 Intr -  13101  13006   96  1  0  101   86    63 0.944   6.46
 2.04 Intr -  15900  15779  122  2  2   66   58    57 0.140  -0.28
 2.03 Intr -  20504  20437   68  2  2   62   76    71 0.230   0.08
 2.02 Intr -  27896  27783  114  2  0  110   25    47 0.011   0.32
 2.01 Init -  45388  45272  117  1  0   75   87   116 0.310  10.45
 2.00 Prom -  46200  46161   40                              -5.55

 3.00 Prom +  53232  53271   40                              -7.25
 3.01 Init +  55230  55417  188  2  2   60   40   148 0.368   5.78
 3.02 Term +  55888  56602  715  1  1    3   42   263 0.550   5.17
 3.03 PlyA +  56652  56657    6                               1.05

 4.00 Prom +  58319  58358   40                              -5.95
 4.01 Init +  58611  58932  322  2  1   67    1   170 0.050   3.74
 4.02 Intr +  63463  63512   50  2  2  109   81     9 0.052  -0.22
 4.03 Intr +  69186  69306  121  2  1   49   73   162 0.211   9.95
 4.04 Intr +  78164  79044  881  0  2   28    3   564 0.001  32.01
 4.05 Term +  91993  92817  825  0  0  102   50   406 0.156  30.27
 4.06 PlyA +  93812  93817    6                               1.05

 5.05 PlyA -  94181  94176    6                               1.05
 5.04 Term - 100254  99998  257  1  2   71   36   250 0.945  12.86
 5.03 Intr - 102978 102862  117  1  0   72   99    48 0.928   3.82
 5.02 Intr - 103423 103336   88  1  1   93   86    43 0.917   3.22
 5.01 Init - 111818 111669  150  2  0   62   49    72 0.173   0.79
 5.00 Prom - 117071 117032   40                              -7.55

 6.00 Prom + 119236 119275   40                              -7.15
 6.01 Init + 122730 123179  450  2  0   80   72   491 0.999  40.66
 6.02 Intr + 126199 126270   72  0  0   70   88    95 0.977   6.38
 6.03 Intr + 126685 126811  127  0  1   76   85   121 0.985   9.93
 6.04 Intr + 128712 128859  148  1  1   66   80    66 0.719   1.97
 6.05 Intr + 149470 149523   54  1  0   94   72    46 0.385   0.78
 6.06 Intr + 151159 151249   91  1  1  118   74    64 0.893   7.08
 6.07 Intr + 153203 153217   15  1  0  109  103    24 0.583   0.82
 6.08 Term + 161509 161664  156  0  0   43   39   132 0.071   0.75
 6.09 PlyA + 161971 161976    6                               1.05

 7.07 PlyA - 163560 163555    6                               1.05
 7.06 Term - 166838 166730  109  1  1   43   50   137 0.124   2.40
 7.05 Intr - 176983 176875  109  2  1   63   30    94 0.036  -0.48
 7.04 Intr - 185317 185092  226  1  1   -4   57   251 0.517   9.44
 7.03 Intr - 190761 190548  214  2  1   42   23   161 0.008   2.80
 7.02 Intr - 207493 207442   52  2  1   79   92    43 0.617   0.85
 7.01 Init - 213090 212913  178  0  1   71   87    73 0.139   4.97
 7.00 Prom - 216364 216325   40                              -4.05

 8.02 PlyA - 217978 217973    6                               1.05
 8.01 Term - 222146 221857  290  0  2   87   55   218 0.542  12.95

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596r:199833070_200055470|GENSCAN_predicted_peptide_1|127_aa
MCEGDVIRQTQGSKWSSREAPDASHRRLIEGRTSSPTLGGKAKGKLKTRRWVGSRLQQRS
EPIPDPHRQAPALPHPGRICKRKLLKDVFHQNDTINQESQKRKREDMGFRLRTRASNMEK
DESHDDG

>gi568815596r:199833070_200055470|GENSCAN_predicted_CDS_1|384_bp
atgtgtgagggggatgtgattcggcagactcaaggcagcaagtggagcagcagagaagca
cctgatgcatcccacagacgcctgatagagggcagaaccagcagccccactttgggaggg
aaggcaaaggggaagctcaaaaccagaagatgggtgggaagtcggcttcagcagcggtca
gagcccatccctgatccacacagacaggcacctgccctgccacaccctggtagaatatgt
aagagaaagctactaaaggatgtgttccaccaaaacgacaccataaaccaagaaagtcaa
aaaagaaaaagagaagacatgggattcaggttgaggaccagggcatccaacatggagaaa
gatgaaagtcatgatgatggctga

>gi568815596r:199833070_200055470|GENSCAN_predicted_peptide_2|216_aa
MSSGTMGADAKGCHTDPVPLLAESSCLMQKGRGPLSCQHWFSTKGNFALGRSLAMSGDIF
GFSSCMGGGGGNCCWHLGERLTDLTFILALLNQHLGCGLRKIMSSSRVGLRLAACLLNVS
EAGRKYIVENIAKAALLDKNGKKHPQVSVLNIFSDQDYKRSVITIATSVDKLGSSVLAAC
LEAFQAIDMEVQEGIHPCLGAVDLIPIYPLSGVTVE

>gi568815596r:199833070_200055470|GENSCAN_predicted_CDS_2|651_bp
atgagctcaggtaccatgggtgcagatgcaaaaggctgtcacactgaccctgtgcccttg
ctggcagaaagcagctgcctcatgcaaaaaggcagagggccactgagctgtcaacactgg
ttctcaaccaagggcaattttgcccttggcaggtctttggcaatgtctggagacattttt
ggtttttccagctgcatgggtgggggtggagggaactgctgctggcatctaggtgaacgc
ctcactgaccttaccttcatcctggccctgctcaaccaacacctgggctgtgggctcaga
aaaatcatgtcttcttccagagtggggctccgtttggctgcctgtttactaaacgtttca
gaagccggaagaaaatacattgttgagaacatagcaaaagcagctcttcttgacaaaaat
ggaaagaaacatcctcaagtttcagtgctcaatatattttccgatcaagactacaagaga
tcagtcattacaatagcaacttctgttgataagttgggcagttctgttctggctgcctgc
ctagaggccttccaggctatcgatatggaagttcaagagggaatccacccttgcctggga
gcagtggacttgattccgatttaccctctctctggtgtcacagtggaatag

>gi568815596r:199833070_200055470|GENSCAN_predicted_peptide_3|300_aa
MKEKMLSTAREKGQVTHKGLKPIIQQQTSLQKPYKPEESGGQYSTFLEFSTQNFISSQTK
LHRLKPTNIKKDKEGHYIMVKGSMQQEELTILNIYALNTRAPRFIKQVLGDLQKDLDSHA
IIMGDFNTPLSILDRSMRQKINKDIQDLNSALHQADLIDIYRTLHSKTTEYTFYSAPHCT
YSKIDHIIGSKTLLSKCKRTEIITNSLSDHSAITLELRIKKFTQNHTTTWKLKNLLLNDY
WVNKKIKAEINKFFETSENKGTAYQNLWDTAKAVFRGKFIGLNAHRRKQERSKIDTLTSQ

>gi568815596r:199833070_200055470|GENSCAN_predicted_CDS_3|903_bp
atgaaggaaaaaatgttaagcacagccagagagaaaggtcaggttacccacaaagggctg
aagcccatcatccaacagcagacctctctgcagaaaccctacaagccagaagagagtggg
ggccaatattcaacattcttagaattttcaacccagaatttcatatccagtcaaactaag
cttcatagacttaaaccaacaaacatcaaaaaagacaaagaaggccattacataatggta
aagggatcaatgcaacaagaagagctaactatcctgaatatatatgcactcaatacaaga
gcacccagattcataaagcaagttcttggagacctacaaaaagacttagactcccatgca
ataatcatgggagactttaacaccccactgtcaatattagacagatcaatgagacagaaa
attaacaaggatattcaggacttgaactcagctctgcaccaagcagacctaatagacatc
tacagaactctccactccaaaacaacagaatatacattctactcagcaccacattgcact
tattctaaaattgaccacataattggaagtaaaacactcctcagcaaatgcaaaagaaca
gaaatcataacaaatagtctctcagaccacagtgcaatcacattagaactcaggattaag
aaattcactcaaaaccacacaactacatggaaactgaagaacctgctcctgaatgactac
tgggtaaataagaaaattaaagcagaaataaataagttctttgaaaccagtgagaacaaa
ggcacagcataccagaatctctgggacacagctaaagcagtatttagagggaaatttata
ggactaaatgcccacaggagaaagcaggaaagatccaaaatcgacaccctaacttcacaa
taa

>gi568815596r:199833070_200055470|GENSCAN_predicted_peptide_4|732_aa
MGKDFMAKTPKAMATKAKTDKWDLIKLKSFCTAKETIIRVNRQPTEWKKIFAMYLPDKGL
ISRIYKELKQIYKKKPHQKVGKGYEQTVVKRKYLCGQKTYERKLIITGNSSSKEEICFQS
GLTVICISGRAATLVPDTEHEILKYETMTGRELGCLAVEVNVFVYRFRPHPSLPFLTHAA
RGRRPLTSSPQRRLPAGPRPPTVEPPAEPPAEVPPSGTPPPPSTSEPLSRRRPMWGFRLL
RSPPLLLLLPQLGIGNASSCSQARTMNPGGSGGARCSLSAEVRRRQCLQLSTVPGADPQR
SNELLLLAAAGEGLERQDLPGDPAKEEPQPPPQHHVLYFPGDVQVTRGLPGYLFLPLVYT
YAVTDSSLVAAAWFLSLPEHTHTFTEGGSSSTPRNPKPCLPRPWRPLSIEPHGEGVRRGL
RSRKSQLSVQVSKRRNLRQGVTRILYIYSIIWFLRGPCNYHEIMTRHPENYQWENWSLEN
VATILAHRFPNSYIWVIKCSRMHLHKFSCYDNFVKSNMFGAPEHNTDFGAFKHLYMLLVN
AFNLSQNSLSKKSLNVWNKDSIASNCRSSPSHTTNGCQGEKVRTCEKSDESAMSFYPPSL
NDASFTLIGFSKGCVVLNQLLFELKEAKKDKNIDAFIKSIRTMYWLDGGHSGGSNTWVTY
PEVLKEFAQTGIIVHTHVTPYQVRDPMRSWIGKEHKKFVQILGDLGMQVTSQIHFTKEAP
SIENHFRVHEVF

>gi568815596r:199833070_200055470|GENSCAN_predicted_CDS_4|2199_bp
atgggcaaagacttcatggctaaaacaccaaaagcaatggcaacaaaagccaaaactgac
aaatgggatctaattaaactaaagagcttctgcacagcaaaagaaactatcatcagagtg
aacaggcaacctacagaatggaagaaaatttttgcaatgtatctacctgacaaagggcta
atatccagaatctacaaggaacttaaacaaatttacaagaaaaaaccccatcaaaaagtg
ggcaaaggatatgaacagacagttgtcaaaagaaaatatttatgtggccaaaaaacttat
gaaagaaagctcatcatcactggtaacagttcttcaaaggaagaaatatgttttcagtca
ggactcacagttatttgcatatcaggacgtgctgccacattggtacctgatacagaacat
gaaattctgaagtatgaaaccatgactggacgagaattagggtgtcttgcggtagaagtg
aatgtatttgtataccgatttcgcccacacccctcccttcctttccttacgcacgctgcg
cgcggacgtcggcctctgacgtcgtcgcctcagcgccggctcccggccgggccgcggccg
ccgaccgttgagccgccggctgagccgcctgctgaagtccctccctcaggaacccctccg
ccaccctccacctccgaaccgctctcgcggcggcgacccatgtgggggttcaggctcctg
cggtcgccgccgttgctgctcctgctgccgcagctcggaatcggaaacgcctcgtcctgc
tctcaggccagaaccatgaacccgggcggcagcggcggcgcgcgatgctccctctcggcc
gaggtgcgccgccgtcagtgcctgcagctttccaccgtgcctggagccgatccgcagcgc
agcaacgaattgctcctgttggcggcggccggggagggactggagcggcaggacctcccc
ggggacccagcgaaggaggagccgcagccgccgccccagcatcacgtcctctatttccct
ggggatgtgcaggtaactcggggcctgcctgggtatctgttccttcctctcgtgtatacg
tacgcggtcactgattcttccctcgtggctgctgcctggttcctttccttgcctgaacac
acccacacattcactgagggtggctcttcctctactccacgaaatccaaaaccgtgcctt
ccacgcccttggcgccctttgtccatagaaccccatggggaaggtgtccgacgagggcta
cgatctcgaaagagccagctgtcggtccaggtttccaagaggcggaatttgagacaggga
gtgacacgcatcttgtatatttattctataatttggtttctcagaggaccgtgtaattac
catgaaattatgactcgtcatcctgagaattatcaatgggaaaactggagtctagaaaat
gttgctaccattttagcccaccggttccccaatagttatatttgggtgataaaatgttcc
cgaatgcatttgcacaaattcagctgctatgacaattttgtgaaaagtaacatgtttggt
gccccagaacacaatactgactttggagcttttaagcacctttatatgttattagttaat
gcttttaatttaagtcagaatagtttatcaaagaaaagtttgaatgtttggaataaggac
tccatagcatctaactgtagatccagtccttctcatactacgaatggttgccagggagaa
aaagtgaggacctgtgaaaaatctgatgagtctgccatgagtttttatccaccatcacta
aatgacgcatcttttactttgattggattcagtaaaggttgtgttgttttgaatcagttg
ctttttgaattgaaagaagccaagaaagacaagaacatagatgcttttatcaaaagcata
agaacaatgtattggctggatggtggtcattctggaggaagcaatacttgggttacttat
ccagaagtcttgaaagaatttgcacaaacaggaattatcgttcacactcatgtaacacct
taccaagtacgtgatccaatgagatcttggattggaaaggagcacaagaaatttgttcag
atacttggggatcttggtatgcaggtgactagccaaattcattttacaaaggaagctcct
tccatagagaatcacttcagggttcatgaagtattttga

>gi568815596r:199833070_200055470|GENSCAN_predicted_peptide_5|203_aa
MFVFTQYISGKTVQGESKLAQGHLLIEKEKVFNLFFRLSQYRVQVGRYLVVMDNLLIQVT
GKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPAL
WFHNVISEEFGVGVNIFWKHLPSECYDKTDTYGNKDPTAASRAAQILDRALKTLAELPEE
YRDFYARRMVLHIQDKAYSKNSE

>gi568815596r:199833070_200055470|GENSCAN_predicted_CDS_5|612_bp
atgtttgtgtttacccagtatatttctgggaaaacagtgcaaggagaaagtaagctggcc
caaggtcatcttctcatagagaaggagaaagtatttaaccttttctttcgactttctcag
tacagagttcaagtgggaagatatttagtagtaatggataatttgttaatacaagtgaca
ggaaaaaagcgtgttgtactcttcagtcctcgagatgcccagtatttatatttaaaaggt
actaaatcagaagtactgaatatagataacccagacttggctaaatatccacttttttcc
aaggctagaagatatgaatgttcccttgaagctggtgatgtattattcattcctgcttta
tggttccataatgtaatttctgaagagtttggagtgggagtgaatatcttttggaagcac
cttccatctgaatgctatgataaaacagatacctatggaaacaaagatcctacagcagca
tcaagagctgcacaaattctggacagagccttgaaaacactggccgagttaccagaggaa
tatagggacttctatgcacgacgaatggtcctacacattcaagacaaagcctacagcaag
aactctgagtaa

>gi568815596r:199833070_200055470|GENSCAN_predicted_peptide_6|370_aa
MALAARLLPQFLHSRSLPCGAVRLRTPAVAEVRLPSATLCYFCRCRLGLGAALFPRSARA
LAASALPAQGSRWPVLSSPGLPAAFASFPACPQRSYSTEEKPQQHQKTKMIVLGFSNPIN
WVRTRIKAFLIWAYFDKEFSITEFSEGAKQAFAHVSKLLSQCKFDLLEELVAKEVLHALK
EKVTSLPDNHKNALAANIDEIVFTSTGDISIYYDEKGRKFVNILMCFWYLTSANIPSETL
RGASVFQVKLGNQNVETKQLLSASYEEVGPPYGDRTRLCQTAPGYCHIPHARSLTWCVGP
GDVKHLWTSNGISMTERDHAESTTKTADPWNFTAFPGIITATATAYSKREIAFDELCKDK
LRRDCHPASR

>gi568815596r:199833070_200055470|GENSCAN_predicted_CDS_6|1113_bp
atggcgctggccgctcgtttgctaccccagttcctgcactctcggtcgctgccctgcggg
gccgtccgactccggactcctgctgtggccgaggtgaggctgccgtcggccacactttgc
tacttctgccgctgtcgcctcggcttgggagcggcgttatttccacgaagcgctagggcc
ttggcagcctcggcgctacctgcccagggctcccggtggccagtgctcagcagcccggga
ctccccgcagccttcgcttctttccctgcctgccctcagcgcagctacagcacggaggag
aagccccagcagcaccagaaaaccaagatgatcgtcctgggattctccaaccccatcaac
tgggttaggactcgaattaaggccttccttatctgggcctatttcgacaaagagttcagc
atcacagagttctccgagggagcgaagcaggcttttgctcatgtatccaagttgctgtca
cagtgtaaatttgatctgttggaagaacttgtggccaaagaggtgctacatgcattgaaa
gaaaaggttacttcactacctgacaaccataaaaatgcccttgctgctaacatagatgaa
attgtatttacatcaacaggagacatctccatttactatgatgagaaaggaaggaagttt
gttaacatcctgatgtgcttttggtatctaaccagtgccaacatccccagtgaaacttta
agaggagccagtgtattccaggttaagttggggaatcagaatgtggaaactaaacaactt
cttagtgcaagctatgaggaagtgggaccaccctatggggacaggaccagactgtgccag
actgcgccagggtactgccatattccacatgcccgttccctcacgtggtgtgtaggtcct
ggggatgttaaacacttatggacctcaaatggcatcagcatgactgaacgtgatcatgca
gagtcaactaccaaaactgctgatccatggaacttcacagcctttccgggcataataacg
gctacagctacagcttattcaaagagagaaatagcctttgatgagctgtgcaaggacaaa
ttaagacgtgactgtcacccagcatctagatag

>gi568815596r:199833070_200055470|GENSCAN_predicted_peptide_7|295_aa
MGKMSPGHFRDLQGNPSHHRPEGLEGKNGGPGPYCFVQIWDMAPCIPATPAPATAKRGQA
SVFTKEKKYLLHSVIVRCFDHVLFTALVKEVFQDTGHHTDKIDSSLFITDTDSLGEDIAQ
HTGPHRDCTWDQGEQPGAMGGKLGSIKRSGVPENVEATSELGNKQRLEQFGRLRRRQENV
GKFETPRDVLNGFDQNADNDMDNEKQADVVSDGDEELVGNWSKGCHKAAIKVLAMAAVSA
KDLTGEEFTSKLMQFLAGFRFPDQEELHLKSETSSAVGPDLENEIMAIKSAAIIR

>gi568815596r:199833070_200055470|GENSCAN_predicted_CDS_7|888_bp
atggggaaaatgtctccagggcatttcagagatcttcaaggcaacccctctcatcacagg
cctgaaggcctagaagggaaaaatggtggcccagggccttactgctttgtgcagatttgg
gatatggcaccctgcataccagccactccagctccagccacagctaaaaggggccaagct
tcggtcttcaccaaagaaaagaaatacctacttcatagtgtcattgtgaggtgctttgat
catgtcctattcaccgcattggtgaaggaggtatttcaggacactggacaccacacagat
aagattgacagcagtttattcatcactgatactgatagtctgggagaggacattgctcaa
cacacagggccacacagggactgcacttgggaccaaggtgaacaaccaggggccatggga
ggcaagcttggcagtatcaagaggagtggggtacctgaaaatgtggaagcaacttcggaa
ctgggtaacaaacagaggttggaacagtttggaaggctcagaagaagacaggaaaatgtg
ggaaagtttgaaactcccagagatgtgttgaatggctttgaccaaaatgctgataatgat
atggacaatgaaaagcaggctgacgtggtctcagatggagatgaggaacttgttgggaac
tggagcaaagggtgtcacaaagcagcaattaaggtgttagccatggctgctgtctcagct
aaagacttgactggagaagaatttacttccaaactcatgcagtttttagcaggattcagg
tttccagatcaagaggagttgcacttgaagagtgaaacctcatctgcagttggacctgat
ttggagaatgaaatcatggccatcaagtctgctgccataataagatga

>gi568815596r:199833070_200055470|GENSCAN_predicted_peptide_8|96_aa
XRRQQERGMRDAKQQKCWPICSLRELRPREVATTREPRLRVPGVSGLEALLSEEYRGVGT
HLENSLAAFLQVCCPLLGVHVVPNHCAPSLAQGQQE

>gi568815596r:199833070_200055470|GENSCAN_predicted_CDS_8|291_bp
naccgaaggcaacaggagcgagggatgagggatgccaaacaacaaaaatgttggcctata
tgctccctccgggagctccgtcccagggaagtagccactacccgagagcccaggctgcga
gtgcctggagtctcaggtctggaggccctgctcagtgaggagtatcgaggggtgggaacc
cacctggaaaatagtctggccgctttcctgcaagtctgctgccctcttctgggggtccac
gttgtccctaatcactgtgctccctccctggcccaagggcaacaggaatga