GENSCAN 1.0	Date run:  7-Nov-116	Time: 18:06:48

Sequence gi568815591f:112106717_112442726 : 336010 bp : 39.20% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   4018   4371  354  0  0   74   64    99 0.038   3.28
 1.02 Term +  14602  14724  123  0  0  100   33    82 0.149   1.30
 1.03 PlyA +  16775  16780    6                               1.05

 2.00 Prom +  20372  20411   40                              -3.65
 2.01 Init +  32129  32272  144  1  0   53   88    66 0.034   3.27
 2.02 Intr +  37125  37185   61  2  1  101   84    26 0.015   0.89
 2.03 Intr +  40825  40972  148  2  1   54   99    89 0.027   4.97
 2.04 Intr +  44087  44282  196  2  1   55  105     2 0.010  -2.90
 2.05 Intr +  48086  48202  117  1  0   83   80    67 0.834   5.14
 2.06 Intr +  48929  49031  103  1  1   87   90    62 0.825   5.13
 2.07 Intr +  50541  50690  150  1  0   62   64    84 0.693   2.61
 2.08 Intr +  73480  73749  270  2  0  -60  100   196 0.025   2.59
 2.09 Intr +  83557  83651   95  2  2   38   65   117 0.039   3.16
 2.10 Term +  98497  99057  561  0  0   70   47   223 0.471   9.78
 2.11 PlyA +  99358  99363    6                               1.05

 3.00 Prom +  99444  99483   40                             -15.66
 3.01 Sngl + 100001 100360  360  1  0   66   53   272 0.948  17.39
 3.02 PlyA + 100854 100859    6                               1.05

 4.03 PlyA - 101050 101045    6                               1.05
 4.02 Term - 104449 104281  169  0  1  111   37    75 0.350   1.07
 4.01 Init - 114421 114126  296  1  2   89   59   151 0.133   9.01
 4.00 Prom - 122017 121978   40                              -4.35

 5.00 Prom + 133058 133097   40                              -5.05
 5.01 Init + 150746 150776   31  1  1   62   92    49 0.102   2.65
 5.02 Intr + 180157 180358  202  2  1   92  115   205 0.982  21.02
 5.03 Intr + 182034 182095   62  0  2   87   36    82 0.038   0.36
 5.04 Intr + 203545 203675  131  2  2   46   70    72 0.061   0.69
 5.05 Intr + 211466 211557   92  1  2   87   41    70 0.127   0.07
 5.06 Intr + 221001 221111  111  0  0   83  108    24 0.188   2.48
 5.07 Intr + 223368 223500  133  0  1   53   87    50 0.397   1.13
 5.08 Intr + 229388 229455   68  1  2   88   52   142 0.802   7.38
 5.09 Intr + 231014 231110   97  2  1   77   94    37 0.824   2.29
 5.10 Intr + 232116 232205   90  2  0   59   81    73 0.844   2.97
 5.11 Intr + 233127 233169   43  2  1   84  111    28 0.998   1.59
 5.12 Intr + 234156 234330  175  1  1  127   45   111 0.972   8.78
 5.13 Intr + 235845 235967  123  0  0  114   14   121 0.016   6.08
 5.14 Intr + 253244 253325   82  2  1   45   53    67 0.007  -2.38
 5.15 Intr + 256912 257008   97  0  1   55   94    84 0.527   4.36
 5.16 Intr + 258241 258387  147  2  0  104   48    87 0.414   5.59
 5.17 Intr + 258605 258786  182  0  2   83   87    43 0.439   2.37
 5.18 Intr + 259500 259568   69  2  0   55   94    74 0.431   3.16
 5.19 Intr + 263603 263822  220  1  1   53   63   117 0.311   2.65
 5.20 Intr + 266232 266345  114  1  0   47   85    76 0.479   2.70
 5.21 Intr + 268176 268395  220  1  1   98   22   119 0.125   2.74
 5.22 Intr + 286701 286799   99  0  0   56   75    79 0.000   1.71
 5.23 Intr + 291486 291531   46  0  1   87   92    33 0.302   1.09
 5.24 Term + 292075 292167   93  0  0  153   42    29 0.781   1.65
 5.25 PlyA + 292297 292302    6                               1.05

 6.00 Prom + 296103 296142   40                              -5.25
 6.01 Init + 301458 301611  154  2  1   75   82    83 0.083   6.59
 6.02 Intr + 302832 303008  177  1  0   40   92    87 0.064   3.27
 6.03 Intr + 310900 311030  131  2  2   91   72    29 0.031   1.09
 6.04 Term + 314029 314121   93  0  0   86   36   133 0.904   4.75
 6.05 PlyA + 314225 314230    6                               1.05

 7.02 PlyA - 316540 316535    6                               1.05
 7.01 Term - 326650 326504  147  1  0   79   48    97 0.089   1.72

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  33534  33664  131  1  2   68   42   134 0.933   4.16
S.002 Init - 168302 168235   68  2  2   76  119    47 0.918   7.20
S.003 Term + 182034 182157  124  0  1   87   49    94 0.862   2.28
S.004 Term + 235845 236013  169  0  1  114   48   124 0.978   7.37
S.005 Intr - 283668 283498  171  1  0   81   71   111 0.814   7.69


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:112106717_112442726|GENSCAN_predicted_peptide_1|158_aa
MGCSEDPPSDTSSIDTVSTAWGSQTGGQLEGWLTCCRRRLSHRGNSAPHGNVRTLTPCQR
LPHSECTCTSAKRIPAHVLTNPQTPIAPWMSTLEWSIRRAGDLHQKQGVIISEKHPPQGV
VTGCYPVIRFPTFPYVFCGAQAPSASYKGPSPSTKRLT

>gi568815591f:112106717_112442726|GENSCAN_predicted_CDS_1|477_bp
atgggctgctctgaggaccctccttcagacacttccagtatagacacagtatccactgct
tggggaagtcagactggtggtcagctggaggggtggcttacatgctgcaggaggaggctg
tcccacaggggcaactccgctccccacggaaatgtgcggaccctcactccctgccagcgt
cttccccattcagaatgcacctgtacctcagcaaaaagaatccctgcccatgttctaacg
aatccccaaacccccattgccccttggatgtccacccttgagtggagtataaggcgtgcg
ggtgacctacatcagaaacagggtgtgatcatttctgaaaagcacccaccgcagggagta
gtaacaggatgctatcctgttattagattccccacattcccctatgtgttctgcggagca
caggctcctagtgcttcttacaaaggtccatctccatcaacaaaacgtttaacatag

>gi568815591f:112106717_112442726|GENSCAN_predicted_peptide_2|614_aa
MHMHQEKATVRRWLSTSQEVGLHYNFNSAGWPNPNPNPSAGRQESTVQTYTFPLVSITAL
ADVLIRIISFAQYLKIPSKVFPIIEKFAHFPVFSIKSRNPASEDLATTITKIRRLSERTS
IYSDTISYPHSWEHQQQQHNPHSLITRYYLAPARLGMLKGLQRFVCLSHKDLLRMSFLVI
KWKKEQDPALQLQPGYGHAIAGSILQELWPDTIPCCASDLKQLGVPDCGQCGPQSSKDVS
QSPREVFEFVSGSANEAWQPSNESNYRVLIQYPPCSGHGRRHFPLPALDMVHCRPDSTPA
VGLLSREAEPDKEGGSPPQPRNPRQMQNDSGEPCSPKEPNKHQRTKDFRKTEAQCSFTCK
NNLFTSADNFYPDRSTQHNLPSARQIRLQFSFPKFGRLPYTVAKSDSFKTAAAKALREAA
AGHRAGTENSESYPVPFSPNASVRVCFPKSYLPAPKNQAFRSPSPFITQQPCTATPPPLR
SPGVERVARSKNTAEIPVLLQRPKNRAAQMLKFTNAPAPQHTHPINPGSQRGRRVREGSA
CQSGSLQDPATFHTPGMSIRARGKGLRLPTVLGVFSLPECCCLPLHPEEPLQLPVALGKK
GKEGEKPHSPPLPT

>gi568815591f:112106717_112442726|GENSCAN_predicted_CDS_2|1845_bp
atgcacatgcaccaagaaaaagccacagtgagaaggtggctgtctacaagccaggaagtg
ggcctgcattataatttcaactctgcaggttggcctaaccctaaccctaacccctctgca
ggtaggcaagaatcaactgtgcagacttacacattccctttggtctcaatcacagcactt
gcagatgttttgattcggatcatctcctttgcccaatacctcaaaataccctcaaaggta
tttcctataattgaaaagtttgcccactttcctgtgttcagtataaaatctagaaatcct
gcatcagaagacctggccacaaccatcacaaaaataaggcggttatctgagaggacttct
atatattcagacaccatttcctacccacattcttgggaacatcagcaacagcaacataat
ccccatagcttaattacaagatactacttggccccagccagactggggatgctaaaaggc
ttgcagaggtttgtttgtttaagccacaaggatctcttaaggatgagttttctggttatt
aagtggaagaaagaacaagatcctgcactgcaacttcagccaggctacgggcatgcaata
gcggggagcattcttcaggagctctggcctgacacaataccttgctgtgcctcagattta
aaacagttaggagtcccagactgtggacagtgtggaccccagagttcaaaagatgtgagt
cagagtcccagggaagtatttgagtttgtcagtggttctgctaatgaagcctggcaacca
agcaatgagagtaattacagagtgcttatccaatacccaccttgtagcggccatgggaga
cgtcattttccccttcctgccctggacatggtacactgccggccagattctacaccagct
gttggcttactctccagagaggcagaaccagacaaggaaggaggtagcccccctcaaccc
agaaacccccggcagatgcaaaacgactctggagaaccttgctctcccaaagagcccaac
aagcatcagaggaccaaagacttcagaaaaacagaagcacagtgctcctttacatgtaaa
aataacctcttcacttctgcagacaacttttaccccgacaggtccacacagcacaacctg
ccatctgccaggcagatcaggctgcaattctcctttcccaagtttggaaggcttccctac
actgtagcaaagtcggacagtttcaaaacagcagcagcaaaggccctgagagaggcagct
gcagggcacagagcaggaacagagaacagcgagagctatcctgttcctttttctccgaac
gccagtgtcagggtatgctttcctaaaagctatctccctgcccccaagaaccaggctttc
cgatccccctccccatttatcactcagcagccctgtaccgccacaccgcccccactgcgc
tcacccggggtcgagagggtggccagaagtaaaaacactgctgaaatacccgttcttctc
caaagaccaaagaaccgagcggcgcagatgttgaaatttaccaatgcccccgccccgcaa
catacacaccccataaatccgggatcgcagagagggaggagggtcagagagggctcagct
tgtcagagcggctctctccaggaccctgccacattccacactccgggaatgtcgatccga
gccagagggaagggtttgcgcctccctactgttttgggggtgttctctctgcccgagtgt
tgttgtctccctctccacccagaggaaccgttgcagctccctgtcgctttggggaagaag
ggtaaggaaggagagaaaccccattcgcctcctcttccaacttga

>gi568815591f:112106717_112442726|GENSCAN_predicted_peptide_3|119_aa
MAASKTQGAVARMQEDRDGSCSTVGGVGYGGEYGAPEARLMCLPFSMTGCATDLWSDPRS
PSALGPPGFDWAPRVVAQRDGLEPVAATWLGLPGDGGENAMGWRRKCHGMAFPSAGEAP

>gi568815591f:112106717_112442726|GENSCAN_predicted_CDS_3|360_bp
atggctgcttccaagacccagggggctgtcgcccgaatgcaggaagaccgtgatgggagc
tgcagcacagtcgggggtgtaggttatgggggtgagtacggtgccccggaggcgcggctg
atgtgtcttcctttctctatgaccgggtgtgcaacggacctctggtctgaccctaggagc
ccttcagctctggggccacctgggttcgactgggccccacgggtggtggcccagcgggat
gggttggagccggtggcggctacttggttggggctgcccggggatggcggagaaaatgcc
atgggatggcggagaaaatgccatggaatggccttcccctccgccggggaagctccctga

>gi568815591f:112106717_112442726|GENSCAN_predicted_peptide_4|154_aa
MGTSLDQEPSRHPAGSGRVEVSGGSAAGLRWWQTAVVDKEQKLSSSGNKHGPEECAVGRF
NRVKTELPYKGRGPKEGSPCWLECLGLYPDNCPSPYALRDITHEIVSSLEDKHYQNHQII
RSRIQALAKSSTTKHPFGGKKVDFDRILQYGDTD

>gi568815591f:112106717_112442726|GENSCAN_predicted_CDS_4|465_bp
atgggcacctcgctggatcaggagcccagcagacaccctgctggatctggaagggtggaa
gtcagcggcgggtcagcggcgggtctgcgatggtggcaaacagcagtggtggacaaagag
caaaagctcagctcgagcggtaacaaacacggaccagaagagtgtgcagttggaaggttt
aatagagtgaaaacggagctcccatacaaagggaggggacccaaagagggtagcccgtgc
tggctggaatgcctgggtttatatcctgacaattgtccctccccctatgctctcagagac
atcacacatgagatagtaagttctctggaagataaacattaccaaaatcatcagataata
aggtccagaatccaagcattagcaaaatcatcaactactaaacacccattcggagggaaa
aaagttgactttgacagaatattacaatatggagatacagattaa

>gi568815591f:112106717_112442726|GENSCAN_predicted_peptide_5|908_aa
MNSEPARDLPDSKDCILEPLSLPESPGGTTTLEGSPSVPCIFCEEHFPVAEQDKLLKHMI
IEHKIVIADVKLVADFQSCVLSQRGQPSPLEEDQSLVKGVVKGPTMNNTDPPVTQEILRV
NKLSPRNRQQGPSEFSTQTLYLREILEQQQQERNDTNFHGVCMFCNEEFLGNRSVILNHM
AREHAFNIGLPDNIVNCNEFLCTLQKKLDNLQCLYCEKTFRDKNTLKDHMRKKQHRKINP
KNREYDRFYVINYLELGKSWEEVQLEDDRELLDHQEDDWSDWEEHPASAVCLFCEKQAET
IEKLYVHMEVSLTSAGSLSVITSRIPNHPSYGATLNAIPDAHEFDLLKIKSELGLNFYQQ
VKLVNFIRRQVHQCRCYGCHVKFKSKADLRTHMEETKHTSLLPDRKTWDQLEYYFPTYEN
DTLLCTLSDSESDLTAQEQNENVPIISEDTSKLNRKIYPKIHMDSQETRITKTILKKKNK
GIGSECGRRNTKGVGAELCHGSSVLEPDGSLPEHTMGFHSVNALHPRDWHPILLEECYGP
GASAVPSVGCFHAPSGWQLPGGLTGPSVATLLPHWPVGLFGELYHVKGSTLVSINGHSAM
VIVSLRPFLFLLKEKAISRSVLATLSGAEGQLLSVFKLHAHTDPSYTFQIHKVLTTGLPP
CPRAICVPPTTSPHGHPEATDNYSTTLSYCLFSWATPGTNSHSLDSLEANAEMEFEVQGS
ISHNLNDEQDIQKIGGLFKTLPFTSSSLTIGSLALTALATVHLLFLHETESNNPSGVSSD
PDKITSPRQYTTKDVLGLIFLLLLPDLLSDPDNYTLANPLNTPPHIKPERILNSVWNFAG
TSEMSVGTYCPYLKEQVQIQCGRMKVPGESGFGFVLLEVLDVLLLVPEYCMTFYHVPVSC
PLTLVVSV

>gi568815591f:112106717_112442726|GENSCAN_predicted_CDS_5|2727_bp
atgaactcagagcctgcaagggacctgccagacagtaaggattgtatcctggagccgctt
tccctgccagaaagtccaggtggcaccaccactttagaaggttctccatctgtgccttgt
attttctgtgaagaacattttcctgtggctgaacaagacaaacttctgaagcacatgatt
attgagcataagattgtcatagctgatgtcaagttggttgctgatttccaaagctgtgtt
ctcagtcaaagaggacaaccatctccactagaagaggaccagtctttggtcaagggtgtg
gtcaaagggcccaccatgaataacacagaccctccagtcactcaggaaattctcagggtt
aataagttatctcctaggaacagacaacaagggccatccgaattctccacacaaaccctt
tacctgagagaaattctggaacaacagcagcaagaacgaaatgataccaattttcatggc
gtttgtatgttttgcaatgaagaattccttggaaacagatctgttattttgaaccacatg
gccagagaacatgctttcaacattggattgccagacaacattgtaaactgcaatgaattt
ttgtgtacattacagaaaaagcttgacaatttgcagtgcttgtactgtgagaagaccttc
agggacaaaaatacacttaaagatcacatgaggaaaaaacagcatcgtaagattaatcct
aagaacagagaatatgacagattttatgtcatcaattatttggaacttggaaaatcgtgg
gaagaagttcagttggaagatgatcgggagttgctggaccatcaggaagatgactggtct
gattgggaagaacaccctgcctctgcagtctgcttattttgtgaaaagcaagcagaaaca
attgagaagttgtatgtccacatggaggtgtccttaacctctgctgggtcactttcagtg
ataacatcacgaattcctaatcatccttcatatggtgctacactaaatgccatcccagat
gcacacgaatttgatcttctcaaaataaagtcagaacttggattaaatttctatcagcaa
gtgaaactggtcaattttattcggaggcaagttcaccaatgcagatgttatggctgccat
gtgaagttcaaatccaaagcagacttaagaactcacatggaagaaactaaacacacttcg
ctgctccccgatagaaagacgtgggatcaactggagtattattttccaacctatgaaaat
gacactctcctgtgtacactatctgacagtgaaagtgacctgacagctcaggaacaaaat
gaaaatgttcccatcatcagtgaagatacatctaaactaaatagaaaaatctatcctaaa
attcatatggactctcaagagactcgaatcaccaaaacaatcttgaaaaagaagaacaag
gggattggcagtgaatgtggaagacgaaatacaaaaggggtgggggcagagctctgtcat
gggagctctgtcttggagcctgacggttctctgccagagcacacaatgggctttcattca
gtgaatgccttgcatcctagagattggcaccccatccttttagaggaatgctatggccct
ggtgcttcagctgtgccctctgtgggctgtttccatgctccctcaggctggcagcttccg
ggaggattgacggggcccagtgtagccaccttgctgccacactggccagttggtctcttt
ggggaattataccatgttaagggctccacgctggtctctattaatggacattcagcaatg
gtgatagttagccttaggccatttctctttctactcaaagaaaaagccatcagcagatca
gtcttggccaccctgagtggagctgaagggcagctgctgtctgttttcaaattgcatgca
catactgacccatcctacaccttccaaattcacaaagttttaacaactggactgccacct
tgccccagggctatctgtgttcctcctactaccagtcctcatggccacccagaggcaact
gataactactcaacaaccttatcttattgcctgttttcttgggccactcctggtaccaac
tcacatagcttggattctctggaagcaaatgctgagatggagtttgaagtgcaaggctcc
atcagccataacctcaatgacgaacaagacatccaaaaaataggaggactgttcaagact
ttacccttcacttcctcctcccttactattggtagccttgcacttacagctctagcaact
gttcaccttttattcttgcatgaaacagaatctaacaacccttcaggagtttcatcagac
cccgacaaaatcacttccccccgacaatatacaaccaaagatgttctaggtttaattttt
ctcctcctccttcccgacctcctgagcgacccagataattacactttagccaaccccctc
aataccccaccccacattaagccagagcgtatcctgaacagcgtctggaactttgcgggc
accagtgaaatgtcagttggaacgtattgcccatacctaaaagagcaggtgcagatacag
tgtgggaggatgaaagtaccaggtgagagtgggttcggttttgttttgctggaggttctg
gatgtgctcttgcttgttccagaatactgcatgaccttttatcatgtccctgtttcctgt
ccactcactctagttgtttcagtctga

>gi568815591f:112106717_112442726|GENSCAN_predicted_peptide_6|184_aa
MDLNIPGSFHWLVSQGFESPSVYKFYITLRLHASESEAPGVKYGVVRQGQVGSSEDGSGL
MALCDVNLVHGKQTPLSTIGRNAAGSAIVLCSCSGSSIQSLGSHPFGRESELEKTTLNFI
WNQKRACIAKTILSKKNKGGDIMLPDFKLYYKATLAVSGSHDIAQARAMLKVVQTAKDLL
SSPF

>gi568815591f:112106717_112442726|GENSCAN_predicted_CDS_6|555_bp
atggacctcaacatcccaggttccttccactggctcgtttctcagggctttgaatctcct
tctgtttacaagttttatattactcttaggctacatgcctctgaaagtgaggcccctgga
gtgaaatatggtgtggtgagacagggccaggtagggtcctctgaagatggttctggtctg
atggccctctgtgatgtcaatttggtccatggaaagcaaacacccttgtccaccattggg
aggaatgctgctggctcagccatagttctctgttcttgctctggcagctccatacagtcc
ctcggttcacacccttttgggcgagaatcagaactagaaaaaactactttaaatttcata
tggaaccaaaaaagagcctgtatagccaagacaatcctaagcaaaaagaacaaaggtgga
gacatcatgctacctgacttcaaactatactacaaggctacactggcagtctccggcagc
cacgatattgcccaggctcgtgctatgttgaaagtggtccaaactgccaaagatttactc
tcctctcccttttag

>gi568815591f:112106717_112442726|GENSCAN_predicted_peptide_7|48_aa
ELIQHKRTASPSYDFICDPTNQHTPLSNPLLTKLSLKTLIPEFLGRLI

>gi568815591f:112106717_112442726|GENSCAN_predicted_CDS_7|147_bp
gaactgattcagcacaagaggacagcttcaccttcctatgatttcatctgtgaccccacc
aatcagcacaccccactttccaacccactactcaccaaattgtccttaaaaaccctgatc
cctgagtttttggggagactgatttga