GENSCAN 1.0	Date run:  7-Nov-116	Time: 18:03:57

Sequence gi568815597r:51819930_52077117 : 257188 bp : 42.81% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.09 Intr -   3857   3735  123  0  0   89   88    25 0.212   2.24
 1.08 Intr -   7940   7867   74  1  2   54   83   101 0.711   4.33
 1.07 Intr -  14241  14088  154  1  1   77   61   213 0.754  15.71
 1.06 Intr -  16283  16202   82  2  1   53   61    53 0.934  -2.61
 1.05 Intr -  16509  16440   70  2  1  116  105    78 0.970  10.57
 1.04 Intr -  18217  18135   83  1  2   41   97    36 0.611  -2.68
 1.03 Intr -  20585  20297  289  1  1  127   80   634 0.984  62.83
 1.02 Intr -  37809  37612  198  2  0   36   78   165 0.257   7.84
 1.01 Init -  58539  58346  194  0  2   78   93   273 0.868  25.29
 1.00 Prom -  60978  60939   40                              -8.35

 2.00 Prom +  65083  65122   40                              -5.85
 2.01 Init +  74287  74601  315  0  0   51    1   150 0.073  -0.02
 2.02 Intr +  81988  82076   89  0  2   62   89   116 0.912   6.95
 2.03 Term +  90739  90925  187  1  1   99   36   155 0.976   7.38
 2.04 PlyA +  92108  92113    6                               1.05

 3.13 PlyA -  92471  92466    6                               1.05
 3.12 Term - 100185  99998  188  1  2   95   48   222 0.994  15.57
 3.11 Intr - 113513 113389  125  1  2  114   76   148 0.854  15.51
 3.10 Intr - 117483 117365  119  0  2   75   64   245 0.964  19.14
 3.09 Intr - 138153 138115   39  0  0   72  116    15 0.054   0.20
 3.08 Intr - 139122 139012  111  0  0   64   87    70 0.001   4.16
 3.07 Intr - 157342 156835  508  0  1   37   64   490 0.008  33.55
 3.06 Intr - 169163 169039  125  2  2   72   90    89 0.407   5.96
 3.05 Intr - 169529 169353  177  2  0   19   59   133 0.603   2.69
 3.04 Intr - 170682 170623   60  0  0   68   91    67 0.379   3.01
 3.03 Intr - 178109 178020   90  2  0   81   85    85 0.481   6.77
 3.02 Intr - 181441 181374   68  2  2   64   84    34 0.476  -1.69
 3.01 Init - 182596 182518   79  1  1   93   37    59 0.660   2.57
 3.00 Prom - 183217 183178   40                              -8.25

 4.00 Prom + 185090 185129   40                              -7.65
 4.01 Init + 186683 186905  223  1  1   65   59   182 0.601  11.77
 4.02 Intr + 187224 187256   33  1  0   76   64    83 0.387   1.98
 4.03 Term + 198649 198896  248  2  2  -31   43   172 0.008  -4.23
 4.04 PlyA + 198979 198984    6                               1.05

 5.06 PlyA - 200221 200216    6                               1.05
 5.05 Term - 201083 201004   80  0  2   89   38   109 0.927   2.95
 5.04 Intr - 203645 203562   84  0  0   81   75    93 0.949   6.17
 5.03 Intr - 204650 204581   70  2  1   58   82    98 0.834   4.04
 5.02 Intr - 207419 207346   74  0  2   80   94    69 0.949   4.91
 5.01 Init - 208688 208649   40  2  1   56  115    -1 0.699  -0.19
 5.00 Prom - 209794 209755   40                              -4.45

 6.03 PlyA - 210012 210007    6                               1.05
 6.02 Term - 214024 212768 1257  1  0   12   47  1271 0.556 105.99
 6.01 Init - 219335 219213  123  2  0   74   68    63 0.464   3.12
 6.00 Prom - 227628 227589   40                             -10.05

 7.00 Prom + 228233 228272   40                              -4.25
 7.01 Init + 235103 235440  338  1  2   81   36   123 0.074   2.41
 7.02 Intr + 239906 239972   67  2  1  115  113    77 0.897  10.89
 7.03 Intr + 244896 245009  114  2  0  104   64   120 0.466  10.92
 7.04 Term + 251855 251890   36  1  0  109   48    32 0.168  -2.34
 7.05 PlyA + 255293 255298    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl +  58891  59409  519  0  0   82   48   234 0.925  14.59
S.002 Init + 140142 140213   72  2  0   75   97    42 0.895   5.00
S.003 Intr + 140695 140855  161  0  2   76   89   102 0.940   6.96


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:51819930_52077117|GENSCAN_predicted_peptide_1|423_aa
MPGRNKAKSTCSCPDLQPNGQDLGENSRVARLGADESEEEGRRGSLSNAGDPEIVKSPSD
PKQYRLLTESKSVNYQIQSNHGSSPVSVVTSKPSSDQKFAQTRFQTEICRASESQRELTT
ISVASRKQWTSYIKLQNGLQALLISDLSNMEGKTGNTTDDEEEEEVEEEEEDDDEDSGAE
IEDDDEEGFDDEDEFDDEHDDDLDTEDNELEELEERAEARKKTTEKQWNLSSLKTRNCFD
SEAMGSLVKGKIPRSSAPVQHLAGWQAEEQQGETDTVLSAAALCVGVGSFADPDDLPGLA
HFLEHMVFMGSLKYPDENGFDAFLKKHGGSDNASTDCERTVFQFDVQRKYFKEALDRWAQ
FFIHPLMIRDAIDREVEAVDSGNAETLKHEPRKNNIDTHARLREFWMRYYSSHYMTLVVQ
SKX

>gi568815597r:51819930_52077117|GENSCAN_predicted_CDS_1|1269_bp
atgcctggaaggaacaaggcgaagtctacctgcagctgccctgacctgcagcccaatgga
caggatctgggcgagaacagccgggttgcccgtctaggagcggatgaatctgaggaagag
ggacggagggggtctctcagtaatgctggggaccctgagatcgtcaagtctcccagcgac
cccaagcaataccgcctcttaactgaatccaagtcagttaattatcagatccaatccaat
catggatccagtccagtttctgttgtgacttccaaacccagttcggatcagaagtttgct
caaactcggttccaaacagaaatctgtcgagcttcagaatctcagcgagaacttaccacg
atatcagttgcttccagaaagcaatggacatcatacatcaaattacagaatggcttgcag
gcacttctgatttcagacctaagtaatatggaaggtaaaacaggaaatacaacagatgat
gaagaagaagaggaggtggaggaagaagaagaagatgatgatgaagattctggagctgaa
atagaagatgacgatgaagagggttttgatgatgaagatgagtttgatgatgaacatgat
gatgatcttgatactgaggataatgaattggaagaattagaagagagagcagaagctaga
aaaaaaactactgaaaaacagtggaacctaagtagtttgaagacgagaaattgttttgat
tcagaagcaatgggttcactagtgaaaggaaagatcccacgatcgtctgcacctgttcag
catttggcaggatggcaagcggaggagcagcagggtgaaactgacacagttctgtctgca
gcggctctttgtgttggagttgggagtttcgctgatccagatgacctgccggggctggca
cactttttggagcacatggtattcatgggtagtttgaaatatccagatgagaatggattt
gatgccttcctgaagaagcatgggggtagtgataatgcctcaactgattgtgaacgcact
gtctttcagtttgatgtccagaggaagtacttcaaggaagctcttgatagatgggcgcag
ttcttcatccacccactaatgatcagagatgcaattgaccgtgaagttgaagctgttgat
agtggaaatgctgagacgctcaagcatgagccaagaaagaataatattgatacacatgct
agattgagagaattctggatgcgttactactcttctcattacatgactttagtggttcaa
tccaaagnn

>gi568815597r:51819930_52077117|GENSCAN_predicted_peptide_2|196_aa
MTKTPKAIATKAKIDKWDLIKLKSFCTAKETIIRLNRQPTEWEKILPIYPSDKSLISRIY
KELKQIYKKKTNNPIKKWAKDMNRHFAKEDIYVANKPMKISSSSLRLRQQGAILEAENSP
HQTPVVMEPFQPPERSYRKQPQNPKASAPREPVETIWSKLLKPRDKNDLTQAAQPLNSPL
LTPETDAFESERRQES

>gi568815597r:51819930_52077117|GENSCAN_predicted_CDS_2|591_bp
atgactaaaacaccaaaagcaattgcaacaaaagccaaaattgacaaatgggatctaatt
aaactaaagagcttctgcacagcaaaagaaactatcatcaggctaaacaggcaacctaca
gaatgggagaaaattttgccaatctatccatctgacaaaagtctaatatccagaatctat
aaggaacttaaacaaatttacaagaaaaaaacaaacaaccccatcaaaaagtgggcaaag
gatatgaacagacactttgcaaaagaagacatttatgtggccaacaaacctatgaaaata
agctcatcatcactgaggttgcggcaacaaggtgccatcttggaagcagagaatagccct
caccagacaccagttgtgatggagcctttccagcctccagaacgatcttacagaaaacag
ccacagaatcccaaggcatcagcaccaagagagcctgtagaaactatctggtctaagctc
ctgaagcccagagataagaatgacttaacccaagctgcacagcctcttaacagtccactg
ttaaccccagaaacagatgcatttgaatctgaaaggagacaggaatcctaa

>gi568815597r:51819930_52077117|GENSCAN_predicted_peptide_3|562_aa
MVTGQSRESTVPISDTRGSMRLTFAEEVIQKGVWSVVDDVRPRKNFVPRIPPLLTVCALA
MEQCPCCRFEPLSPRKQQLVLPSRRPSGSEPVVPHSESAESKEGTQALDLVTRAPGITEN
KRIVDRKSHPTLFCSPSMEATLGRAGQQPLEAKRDVEEVGVHLFCAYKQRKTMEAVKGPI
YRSGKPWCPVGAREEAFWGRCSDGVILSSVHFLSGAGVRSECVNGGVTIRRMVTQGDTEG
LFLSDSRSLLQMASVTDGKTGVKDASDQNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTP
AFVSTVGIDFKVKTVYRHEKRVKLQIWVSPGNLGQDFPEKRLACQYKGLEVGPAWNFWAL
QHQALMLFQTACSLRAGTGSDSGLQLQHQAQGLANSKGLTKTGKMKVLQLEHGEEEIRKD
TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKC
DMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLDTDPSM
LGSSKNTRLSDTPPLLQQNCSC

>gi568815597r:51819930_52077117|GENSCAN_predicted_CDS_3|1689_bp
atggttactggtcagtccagagagagtacagttccaatttcggacacaagagggagtatg
agacttacctttgccgaagaggtcatccagaaaggggtctggtcagtggtggatgatgtg
agaccaaggaagaactttgtgcctaggattccacccctgctgacagtgtgtgccctggcg
atggagcagtgtccttgttgcagatttgaaccactttcacctcgtaaacagcagctggtc
ctgccgtcccgccgaccgtccgggagcgaacccgtcgtcccgcactcggagtccgcggag
tccaaggaggggacccaggcactggaccttgttacacgggcaccggggatcacagaaaat
aagagaatcgtggacagaaaaagtcatccaactctgttctgtagtccaagcatggaagca
actttggggagggcagggcagcagcctttggaagctaagagagatgtggaggaggtgggt
gtccacctgttctgtgcctataaacagaggaagacaatggaagccgtgaaaggccctatc
tatagaagtggaaagccctggtgccctgtgggagccagagaagaagcattttgggggagg
tgtagtgatggggtgattctgagtagtgtgcatttcctcagtggtgctggagtaaggagt
gagtgtgtgaatggtggggtgaccattagaaggatggtgactcagggtgacaccgaaggt
ctgttcctgagtgactctaggtctctcttgcagatggcttcagtgacagatggtaaaact
ggagtcaaagatgcctctgaccagaattttgactacatgtttaaactgcttatcattggc
aacagcagtgttggcaagacctccttcctcttccgctatgctgatgacacgttcacccca
gccttcgttagcaccgtgggcatcgacttcaaggtgaagacagtctaccgtcacgagaag
cgggtgaaactgcagatctgggtgagtcccgggaatcttgggcaggattttcctgagaag
cggctggcctgccagtacaagggcttagaggtggggccagcttggaacttctgggcctta
cagcatcaggcattaatgctgtttcagactgcatgctccctgagggcagggaccgggtct
gactcgggtctacagctccagcaccaggcacagggccttgccaatagtaagggtttaaca
aagactggcaaaatgaaagttcttcagctagaacatggggaggaagagataaggaaggac
acagctgggcaggagcggtaccggaccatcacaacagcctattaccgtggggccatgggc
ttcattctgatgtatgacatcaccaatgaagagtccttcaatgctgtccaagactgggct
actcagatcaagacctactcctgggacaatgcacaagttattctggtggggaacaagtgt
gacatggaggaagagagggttgttcccactgagaagggccagctccttgcagagcagctt
gggtttgatttctttgaagccagtgcaaaggagaacatcagtgtaaggcaggcctttgag
cgcctggtggatgccatttgtgacaagatgtctgattcgctggacacagacccgtcgatg
ctgggctcctccaagaacacgcgtctctcggacaccccaccgctgctgcagcagaactgc
tcatgctag

>gi568815597r:51819930_52077117|GENSCAN_predicted_peptide_4|167_aa
MASWEGKDLTVPQPDTRKGSVLRRISKRGRNASCSSDKRKASVSCRSLGNGMSRYKTRLY
APSTEIGKSRLRAGVSRSTLRETPTDTQDRGLASALEENGHLMTAPDVQLGYFNVKWSRA
MIDVLGKGYFILMRKIREDSLEEVAQNGYEGRTERTYFRLRKQDERR

>gi568815597r:51819930_52077117|GENSCAN_predicted_CDS_4|504_bp
atggcctcgtgggaagggaaagacctgaccgtcccccagcccgacacccgtaaagggtct
gtgctgaggaggattagtaaaagaggaaggaatgcctcttgcagttcagacaagaggaag
gcatctgtctcctgccggtccctgggcaatggaatgtctcggtataaaacccgattgtat
gctccatctactgagatagggaaaagccgccttagggctggagtctctcgttccacctta
cgagaaacacccacagatacacaggacagaggactagcttctgccctcgaggagaatggc
cacctgatgacagccccagatgtgcaattgggttacttcaatgtaaagtggtccagggct
atgatagatgtattggggaaaggatattttatcctcatgagaaagatcagggaagactct
ctggaagaagtggctcaaaatgggtatgaaggaagaacagaaagaacatattttaggctg
aggaaacaagatgaacgaagatag

>gi568815597r:51819930_52077117|GENSCAN_predicted_peptide_5|115_aa
MVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILF
LDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAFRKKHLEDEL

>gi568815597r:51819930_52077117|GENSCAN_predicted_CDS_5|348_bp
atggtgattattcataaatcctggtgtggagcttgcaaagctctaaagcccaaatttgca
gaatctacggaaatttcagaactctcccataattttgttatggtaaatcttgaggatgaa
gaggaacccaaagatgaagatttcagccctgacgggggttatattccacgaatccttttt
ctggatcccagtggcaaggtgcatcctgaaatcatcaatgagaatggaaaccccagctac
aagtatttttatgtcagtgccgagcaagttgttcaggggatgaaggaagctcaggaaagg
ctgacgggtgatgccttcagaaagaaacatcttgaagatgaattgtaa

>gi568815597r:51819930_52077117|GENSCAN_predicted_peptide_6|459_aa
MKPIQGAIGDAGSVPKKQRMLMTLQEKIELLDMYCRLRSTQSLYLLSEKAEPGPSWRRTP
VSIETRGSVKVKGDRKSSLHFRLTSETRTTRKLAQRGCQWSLPERMPLVVFCGLPYSGKS
RRAEELRVALAAEGRAVYVVDDAAVLGAEDPAVYGDSAREKALRGALRASVERRLSRHDV
VILDSLNYIKGFRYELYCLARAARTPLCLVYCVRPGGPIAGPQVAGANENPGRNVSVSWR
PRAEEDGRAQAAGSSVLRELHTADSVVNGSAQADVPKELEREESGAAESPALVTPDSEKS
AKHGSGAFYSPELLEALTLRFEAPDSRNRWDRPLFTLVGLEEPLPLAGIRSALFENRAPP
PHQSTQSQPLASGSFLHQLDQVTSQVLAGLMEAQKSAVPGDLLTLPGTTEHLRFTRPLTM
AELSRLRRQFISYTKMHPNNENLPQLANMFLQYLSQSLH

>gi568815597r:51819930_52077117|GENSCAN_predicted_CDS_6|1380_bp
atgaaacccatacaaggtgccattggtgatgctggaagtgttcccaagaagcagagaatg
ctcatgacattacaagaaaaaattgaattgcttgatatgtactgtagactgaggtctaca
cagtctctgtatctcctttctgagaaagctgaacctgggcctagctggcgtagaactcct
gtttccatagaaacaagagggtctgtaaaagtcaagggagacaggaagagcagtttgcac
ttccggcttacgtcggagacgcgtacaacccggaagttggcgcagcgcggttgccaatgg
tcgctccctgagaggatgccgctcgtggtgttttgcgggctgccgtacagcggcaagagc
cggcgtgctgaagagttgcgcgtggcgctggctgccgagggccgcgcggtgtacgtggtg
gacgacgcagctgtcctgggcgcagaggacccagcggtgtacggcgattctgcccgtgag
aaggcattgcgtggagctctgcgagcctccgtggaacggcgcctgagtcgccacgacgtg
gtcatcctggactcgcttaactacatcaaaggtttccgttacgagctctactgcctggca
cgggcggcgcgcaccccgctctgcctggtctactgcgtacggcccggcggcccgatcgcg
ggacctcaggtggcgggcgcgaacgagaaccctggccggaacgtcagtgtgagttggcgg
ccacgcgctgaggaggacgggagagcccaggcggcgggcagcagcgtcctcagggaactg
catactgcggactctgtagtaaatggaagtgcccaggccgacgtacccaaggaactggag
cgagaagaatccggggctgcggagtctccagctcttgtgactccggattcagagaaatct
gcaaagcatgggtccggtgccttttactctcccgaactcctggaggccctaacgctgcgc
tttgaggctcccgattctcggaatcgctgggaccggcctttattcactttggtgggccta
gaggagccgttgcccctggcggggatccgctctgccctgtttgagaaccgggccccacca
ccccatcagtctacgcagtcccagcccctcgcctccggcagctttctgcaccagttggac
caggtcacgagtcaagtactggccggattgatggaagcgcagaagagcgctgtccccggg
gacttgctcacgcttcctggtaccacagagcacttgcggtttacccggcccttgaccatg
gcagaactgagtcgccttcgtcgccagtttatttcgtacactaaaatgcatcccaacaat
gagaacttgccgcaactggccaacatgtttcttcagtatttgagccagagcctgcactga

>gi568815597r:51819930_52077117|GENSCAN_predicted_peptide_7|184_aa
MTRSRKLKPSKQVAPRRGRVSMAVGARGHGAERTQGRSPSRRSTQFAERRSAQHLYFPDF
FFSNSEGSDVRRMWVVPPGSGLGWSELKGADHVEGYESCSRARVAFRGFWVSRFTNSMNQ
EKLAKLQAQVRIGGKGTARRKKKVVHRTATADDKKLQSSLKKLAVNNIAGIEELEPQVPI
DRQL

>gi568815597r:51819930_52077117|GENSCAN_predicted_CDS_7|555_bp
atgacgaggagcaggaaactgaagcccagcaaacaggtggccccgagacgaggccgcgtc
tccatggcagtaggtgcgcggggccacggggctgagcggacgcagggccggagtcccagc
agacggtccacacagttcgccgagcgccgctcagcacaacacctctacttcccagatttt
tttttttcaaactctgaaggaagtgatgttagacggatgtgggtggtgcctccggggtcc
ggtttgggatggagtgagcttaaaggtgcagatcacgtagaagggtacgagagctgttct
cgagcgcgagttgcttttcgtggattctgggtgtccagatttaccaacagcatgaatcaa
gaaaagttagccaaacttcaggctcaggtccggatagggggcaagggtacagctcgcaga
aagaagaaggtggtacatagaacagccacagctgatgacaaaaagcttcagagttctcta
aaaaaactggctgtgaataatatagctggtattgaagagctagagcctcaggtgcccata
gatagacagctctga