GENSCAN 1.0	Date run:  7-Nov-116	Time: 17:53:31

Sequence gi568815582r:25139819_25357127 : 217309 bp : 43.62% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  21284  21386  103  0  1   81   42   105 0.380   4.43
 1.02 Intr +  24780  24900  121  0  1   81   98    79 0.676   8.70
 1.03 Intr +  29294  29395  102  1  0  129   71   141 0.995  16.87
 1.04 Intr +  30896  30987   92  1  2   61   80   102 0.957   5.49
 1.05 Intr +  35119  35216   98  1  2  103   70   106 0.446   9.95
 1.06 Term +  52379  52530  152  0  2   69   37   133 0.521   4.37
 1.07 PlyA +  53722  53727    6                               1.05

 2.00 Prom +  72015  72054   40                              -2.66
 2.01 Init +  73405  73464   60  0  0   78   47    68 0.687   2.95
 2.02 Intr +  77380  77627  248  0  2   90   94   257 0.948  22.76
 2.03 Intr +  81639  81765  127  0  1  102   98   138 0.997  16.88
 2.04 Intr +  84544  84758  215  0  2   60   92   273 0.874  22.41
 2.05 Intr +  87250  87384  135  1  0   91   63   117 0.988   9.18
 2.06 Term +  88626  88674   49  0  1  100   48    78 0.622   1.78
 2.07 PlyA +  89089  89094    6                               1.05

 3.08 PlyA -  91167  91162    6                               1.05
 3.07 Term - 100920  99998  923  1  2   89   45   422 0.941  30.36
 3.06 Intr - 104458 103967  492  2  0   41   91   393 0.199  27.87
 3.05 Intr - 107572 106889  684  2  0   67   83   516 0.320  40.54
 3.04 Intr - 112217 112091  127  2  1   14   82    92 0.650   1.45
 3.03 Intr - 113219 113128   92  0  2   95   88    19 0.849   2.31
 3.02 Intr - 115574 115388  187  2  1   80   95   148 0.976  13.96
 3.01 Init - 117309 116911  399  0  0   86   94   347 0.876  31.77
 3.00 Prom - 131973 131934   40                              -1.26

 4.07 PlyA - 133759 133754    6                               1.05
 4.06 Term - 137054 136939  116  0  2   67   43    66 0.295  -1.27
 4.05 Intr - 140121 140012  110  2  2   72   38    94 0.051   2.73
 4.04 Intr - 158617 158546   72  0  0   71   80    41 0.006   0.12
 4.03 Intr - 175417 175313  105  0  0   38  110    60 0.501   2.53
 4.02 Intr - 184154 184087   68  2  2  104   67    64 0.504   3.60
 4.01 Init - 188034 187987   48  0  0   97  110    -1 0.576   3.95
 4.00 Prom - 197588 197549   40                              -2.46

 5.00 Prom + 200977 201016   40                              -4.36
 5.01 Init + 206294 206432  139  1  1   83   78    80 0.540   6.80
 5.02 Term + 213168 213259   92  1  2   33   48   118 0.685   0.18
 5.03 PlyA + 214722 214727    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -   3784   3617  168  2  0   42   86    93 0.804   4.42
S.002 Intr -  12459  12298  162  1  0   84   26   116 0.884   4.95


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815582r:25139819_25357127|GENSCAN_predicted_peptide_1|222_aa
XGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKW
AANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWET
ASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKHDSVS
IKLQPATCSREAQLFLQETLEKLHPETLSEIPVIRMFVDLGL

>gi568815582r:25139819_25357127|GENSCAN_predicted_CDS_1|669_bp
natggacacatactggattcaaagagatatgccgttattggagcagatctccgagacctg
tctgaactggaagagaagctaaagaaatgtaacatgaatacacaattgccaacactcctg
atagctgaatgtgtgctggtttacatgactccagagcagtccgcaaacctcctgaagtgg
gcagccaacagttttgagagagccatgttcataaactacgaacaggtgaacatgggtgat
cggtttgggcagatcatgattgaaaacctgcggagacgccagtgtgacctggcgggagtg
gagacctgcaagtcattagagtcacagaaagaacggctcctgtcgaatgggtgggaaaca
gcatcggccgtcgacatgatggagttgtacaacaggttacctcgagctgaagtgagcagg
atagaatcacttgaattcctggatgaaatggagctgctggagcagctcatgcggcattac
tgcctttgctgggcaaccaaaggaggaaatgagcttggattgaaacatgattcagtttcc
ataaaattacagccagccacatgctcaagagaggcacagctgttcctgcaggagaccctg
gagaagcttcacccagaaaccctcagtgagatccctgtgattcgcatgttcgtggacctg
ggtttgtag

>gi568815582r:25139819_25357127|GENSCAN_predicted_peptide_2|277_aa
MEVAWIPESPFGDEPVMDYYIAMCEPEFGNDKAREPSVGGRWRVSWYERFVQPCLVELLG
SALFIFIGCLSVIENGTDTGLLQPALAHGLALGLVIATLGNISGGHFNPAVSLAAMLIGG
LNLVMLLPYWVSQLLGGMLGAALAKAVSPEERFWNASGAAFVTVQEQGQVAGALVAEIIL
TTLLALAVCMGAINEKTKGPLAPFSIGFAVTVDILAGGPVSGGCMNPARAFGPAVVANHW
NFHWIYWLGPLLAGLLVGLLIRCFIGDGKTRLILKAR

>gi568815582r:25139819_25357127|GENSCAN_predicted_CDS_2|834_bp
atggaagtggcctggatccctgagtcaccatttggagacgagcctgtcatggactattat
atagccatgtgtgagcctgaatttggcaatgacaaggccagggagccgagcgtgggtggc
aggtggcgagtgtcctggtacgaacggtttgtgcagccatgtctggtcgaactgctgggc
tctgctctcttcatcttcatcgggtgcctgtcggtcattgagaatgggacggacactggg
ctgctgcagccggccctggcccacgggctggctttggggctcgtgattgccacgctgggg
aatatcagtggtggacacttcaaccctgcggtgtccctggcagccatgctgatcggaggc
ctcaacctggtgatgctcctcccgtactgggtctcacagctgctcggggggatgctcggg
gctgccttggccaaggcggtgagtcctgaggagaggttctggaatgcatctggggcggcc
tttgtgacagtccaggagcaggggcaggtggcaggggcgttggtggcagagatcatcctg
acgacgctgctggccctggctgtatgcatgggtgccatcaatgagaagacaaagggccct
ctggccccgttctccatcggctttgccgtcaccgtggatatcctggctgggggccctgtg
tctggaggctgcatgaatcccgcccgtgcttttggacctgcggtggtggccaaccactgg
aacttccactggatctactggctgggcccactcctggctggcctgcttgttggactgctc
attaggtgcttcattggagatgggaagacccgcctcatcctgaaggctcggtga

>gi568815582r:25139819_25357127|GENSCAN_predicted_peptide_3|967_aa
MAVALDSQIDAPLEVEGCLIMKVEKDPEWASEPILEGSDSSETFRKCFRQFCYEDVTGPH
EAFSKLWELCCRWLKPEMRSKEQILELLVIEQFLTILPEKIQAWAQKQCPQSGEEAVALV
VHLEKETGRLRQQVSSPVHREKHSPLGAAWEVADFQPEQVETQPRAVSREEPGSLHSGHQ
EQLNRKRERRPLPKNARPSPWVPALADEWNTLDQEVTTTRLPAGSQEPVKDVHVARGFSY
RKSVHQIPAQRDLYRDFRKENVGNVVSLGSAVSTSNKITRLEQRKEPWTLGLHSSNKRSI
LRSNYVKEKSVHAIQVPARSAGKTWREQQQWGLEDEKIAGVHWSYEETKTFLAILKESRF
YETLQACPRNSQVYGAVAEWLRECGFLRTPEQCRTKFKSLQKSYRKVRNGHMLEPCAFFE
DMDALLNPAARAPSTDKPKEMIPVPRLKRIAISAKEHISLVEEEEAAEDSDDDEIGIEFI
RKSEIHGAPVLFQNLSGVHWGYEETKTFLDILRETRFYEALQACHRKSKLYGAVAEQLRE
CGFLRTPEQCRTKFKSLQKSYRKVKNGHVLESCAFYKEMDALINSRASAPSPSTPEEVPS
PSRQERGGIEVEPQEPTGWEPEETSQEAVIEDSCSERMSEEEIVQEPEFQGPPGLLQSPN
DFEIGSSIKEDPTQIVYKDMEQHRALIEKSKRVVSQSTDPSKYRKRECISGRQWENLQGI
RQGKPMSQPRDLGKAVVHQRPFVGKRPYRLLKYGESFGRSTRLMCRMTHHKENPYKCGVC
GKCFGRSRSLIRHQRIHTGEKPFKCLDCGKSFNDSSNFGAHQRIHTGEKPYRCGECGKCF
SQSSSLIIHQRTHTGEKPYQCGECGKSFTNSSHFSAHRRVHTGENPYKCVDCEKSFNNCT
RFREHRRIHTGEKPYGCAQCGKRFSKSSVLTKHREVHVREKPLPHPPSLYCPENPHKGKT
DEFRKTF

>gi568815582r:25139819_25357127|GENSCAN_predicted_CDS_3|2904_bp
atggctgtcgccctcgactctcagatcgacgcgcccctggaggttgagggatgcctaata
atgaaggtggaaaaggaccctgagtgggcatcagagcccattctggaaggatcggatagc
tctgagaccttccgcaaatgcttcaggcaattctgttatgaggatgtgactggaccccat
gaagctttcagtaaactctgggaactttgctgccggtggctgaagccagaaatgcgttcc
aaggagcaaatacttgagctgctggtgattgagcagtttctcaccattttacccgagaag
attcaggcttgggcacagaagcagtgtccgcaaagtggagaggaagcggtggccctggta
gtgcatttggagaaagagactggaagactaagacagcaggtcagcagtcccgtgcaccgg
gagaagcactccccacttggagcagcgtgggaggtggcagacttccagccagagcaggtg
gagacccaacccagggcggtgtctcgggaggaacctggaagcctccactcaggacaccag
gaacagctgaaccgaaagcgagaacgtcggcccttacccaagaatgctcggccttctccc
tgggttcctgcccttgctgatgaatggaataccctagatcaggaagtgacaaccacacgg
cttcctgctgggtcccaggaaccagtgaaagatgtccacgtggccagaggcttttcctac
agaaagagtgtgcatcagattcctgcccaaagggacctctaccgggatttcaggaaggag
aatgttgggaacgtggtctccctgggaagtgcagtgtctacatctaacaagataacccgg
ttggaacagagaaaggagccatggactctaggtctgcattcctctaacaagagaagtatc
ctacgaagcaactacgtcaaggaaaagtcagttcatgctattcaggtccctgcaaggagt
gcaggaaaaacatggagagagcagcagcagtggggtttagaagatgaaaagatagcaggt
gtgcattggagctatgaggaaacaaagactttcctggcaattctcaaagagtctcgcttt
tatgaaacacttcaggcctgtccccgaaatagccaagtgtatggtgctgtggctgaatgg
ttgcgagaatgtggcttccttagaaccccagaacagtgtcgaaccaagttcaaaagtctc
cagaaaagctatcgaaaggtgagaaatggccacatgctagaaccctgcgccttctttgag
gacatggatgctttgttgaaccctgcagcccgtgctccgtccactgataaaccaaaggag
atgatacctgtccccagactgaagagaattgccatcagtgctaaggaacacatcagcttg
gtggaggaggaggaagctgcagaagattctgatgatgatgaaataggcatcgaatttatc
cgcaagtctgaaatccatggtgcccctgtcttgtttcagaatctcagtggcgtgcactgg
ggctatgaagaaaccaagacttttcttgatatcctccgtgagactcggttttatgaagcg
cttcaagcctgtcatcggaagagcaaattgtatggggctgtagctgaacagcttcgagag
tgcggcttcctccggacaccagaacagtgccgaaccaagttcaaaagccttcagaagagt
taccgcaaggtgaaaaatggccacgtgctagagtcctgcgcgttctacaaggagatggat
gccctgattaactctcgggcatctgctccttcccccagcaccccagaggaagtcccatca
ccttcaaggcaagaaagagggggtattgaggttgaaccccaggaacctacaggctgggaa
cctgaagagacctcacaggaggcagtaatagaagactcttgcagtgagagaatgagcgag
gaggaaattgtgcaagagccagagttccagggacctccaggtctactgcagagcccaaat
gattttgaaatcggaagtagcatcaaggaggatccaacacagatagtatataaggacatg
gaacagcatagggcattaatagaaaagtctaaaagagttgtttcccagagtaccgacccc
agcaaatatcgcaaaagggaatgcatctcaggaagacaatgggaaaatcttcaaggaatt
agacagggaaagccgatgtctcagcctagagatttagggaaagccgttgtgcatcagagg
ccttttgtggggaagagaccctacagacttctcaaatatggagaaagctttggaaggagc
actcgtctgatgtgccggatgacccaccacaaggagaatccttacaagtgtggtgtctgt
gggaagtgctttggtagaagcaggagcctgatcagacaccaaagaatccacacaggcgaa
aaaccttttaaatgtcttgactgtggaaaaagctttaatgactcctcaaattttggtgcc
caccagagaatccacacaggagagaaaccctacagatgcggagagtgtggaaaatgcttt
agtcagagctctagtcttattatacatcagagaacgcacaccggtgagaagccctatcag
tgtggagagtgtgggaaaagtttcaccaacagttctcatttcagcgcccaccggagagtt
cacactggggagaatccctacaaatgtgtggactgtgaaaaaagtttcaataactgtacg
agatttcgagaacatcggagaatacacactggagagaagccctatggatgtgcccagtgt
ggcaaacgtttcagtaagagttctgttcttaccaaacatcgggaagttcatgtgagagaa
aagcctctgccacaccctccatctctgtattgccctgagaacccacataagggaaagact
gatgaatttaggaaaactttttga

>gi568815582r:25139819_25357127|GENSCAN_predicted_peptide_4|172_aa
MVEGEGGAKSHLTWQQTHTQSISKPGPLCLPNPAKNDESKIAEEEFLTFISSQKHPLKQP
PTHKNTFTRAKKFSYECHLHLNPELLLWELQMAHVRMRSSGETSEMKAINAQILGQLMVS
QVALLILAGLLSCPELAGDSKSDVIFGHKLPSAVHFWINSHHYHLKKQTLSW

>gi568815582r:25139819_25357127|GENSCAN_predicted_CDS_4|519_bp
atggtggaaggtgaaggaggagcaaagtcacatcttacatggcagcagacccatacccaa
tccatcagcaagcctggtcccctctgcctgccaaatcctgccaaaaatgatgaaagcaag
atagcagaagaagagtttctgacattcatctcctcacagaaacatccacttaaacaacca
ccaacacataaaaatacctttacaagagctaagaaattcagctatgaatgccaccttcac
ctcaaccctgaactcctcttatgggagctgcagatggcccacgtaagaatgaggtcctct
ggggagaccagtgagatgaaagcaatcaatgcacagatcttggggcagctgatggtcagc
caggtggctctgctgatcctggctggcttgctctcgtgtccagagcttgctggagacagc
aagagtgatgtcatttttgggcacaaactgccctctgctgttcacttttggattaacagc
caccattatcacctgaagaagcaaacgctgtcctggtag

>gi568815582r:25139819_25357127|GENSCAN_predicted_peptide_5|76_aa
MAEGEANMSFFTWQQQGEVQSEVGEKPLIKPSDLVTTHSPSREQHGAISSECFDGEHEDM
WNLATYMEGTINPRLP

>gi568815582r:25139819_25357127|GENSCAN_predicted_CDS_5|231_bp
atggcagaaggggaagcaaacatgtccttcttcacatggcagcaacaaggagaagtgcag
agcgaagtaggggaaaagccccttataaaaccatcagatcttgtgacaactcactcacca
tcacgagaacagcatggagctatatcatcagaatgctttgatggagaacatgaggacatg
tggaacctggccacttacatggaaggtaccatcaacccacgtcttccctga