GENSCAN 1.0	Date run:  7-Nov-116	Time: 17:43:53

Sequence gi568815595f:58232989_58524957 : 291969 bp : 44.35% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  23599  23717  119  0  2   75   99    40 0.147   3.71
 1.02 Intr +  27876  28076  201  0  0   16   41   166 0.092   3.10
 1.03 Intr +  34201  34357  157  1  1  120   51    97 0.979   9.21
 1.04 Intr +  36333  36446  114  2  0   87  115   104 0.964  13.64
 1.05 Intr +  37944  38076  133  2  1   85  119    68 0.999   9.82
 1.06 Intr +  41670  41827  158  1  2   59   97   208 0.201  18.53
 1.07 Intr +  48566  48646   81  1  0   43   98    42 0.001   0.53
 1.08 Intr +  52097  52151   55  1  1   77   84   109 0.989   7.95
 1.09 Intr +  52365  52465  101  1  2   51   91   123 0.195   8.73
 1.10 Term +  60601  60777  177  0  0   73   54   195 0.752  12.29
 1.11 PlyA +  61505  61510    6                               1.05

 2.04 PlyA -  61879  61874    6                               1.05
 2.03 Term -  65186  65096   91  1  1  136   44    57 0.623   3.29
 2.02 Intr -  65435  65272  164  2  2   91   91    37 0.128   3.07
 2.01 Init -  71928  71926    3  0  0  103   81     0 0.096   0.80
 2.00 Prom -  75888  75849   40                              -4.26

 3.00 Prom +  76255  76294   40                              -6.76
 3.01 Init +  77342  77418   77  1  2   74   95    61 0.852   5.96
 3.02 Intr +  77519  77603   85  2  1  114   64    83 0.600   8.32
 3.03 Intr +  99977 100102  126  1  0   98   74   260 0.008  26.48
 3.04 Intr + 132886 132936   51  0  0  101  115    29 0.199   6.00
 3.05 Intr + 136443 136490   48  2  0  104   99    10 0.120   2.58
 3.06 Intr + 149526 149712  187  2  1   88  107    42 0.060   5.36
 3.07 Intr + 157594 157671   78  2  0   82   66    58 0.683   2.52
 3.08 Intr + 158159 158232   74  0  2   73   94    13 0.802  -0.47
 3.09 Intr + 158785 158859   75  0  0  111   97    -3 0.761   2.61
 3.10 Intr + 162010 162114  105  0  0   77   77    78 0.983   6.01
 3.11 Intr + 162670 162771  102  0  0   86   94    52 0.984   5.97
 3.12 Intr + 164051 164212  162  1  0   65  101    90 0.994   8.17
 3.13 Intr + 164617 164734  118  0  1  102   52    96 0.569   7.44
 3.14 Intr + 166254 166389  136  1  1    9   97    41 0.129  -3.27
 3.15 Intr + 170874 170922   49  0  1   90   98    39 0.400   3.78
 3.16 Intr + 175936 176013   78  0  0  113   99    39 0.365   7.25
 3.17 Intr + 177102 177171   70  2  1   85   93    54 0.307   4.35
 3.18 Term + 191764 191972  209  2  2  139   48   128 0.973  11.40
 3.19 PlyA + 192145 192150    6                               1.05

 4.11 PlyA - 192191 192186    6                               1.05
 4.10 Term - 195191 195046  146  0  2  104   29   115 0.935   5.27
 4.09 Intr - 195626 195485  142  2  1   65   63   114 0.978   6.53
 4.08 Intr - 196811 196720   92  0  2  115  105    -1 0.999   4.01
 4.07 Intr - 197250 197140  111  1  0   56  116    43 0.935   4.25
 4.06 Intr - 197954 197669  286  2  1   84   76   170 0.984  12.31
 4.05 Intr - 198640 198605   36  1  0   82   80    33 0.558   0.36
 4.04 Intr - 198805 198743   63  1  0   50   99    51 0.713   1.31
 4.03 Intr - 198996 198889  108  0  0   74   88   126 0.985  11.68
 4.02 Intr - 200696 200643   54  2  0  115   92    68 0.970   9.08
 4.01 Init - 200821 200780   42  1  0  104   80    40 0.704   4.61
 4.00 Prom - 204837 204798   40                              -1.66

 5.00 Prom + 206624 206663   40                              -6.06
 5.01 Init + 207154 207257  104  0  2   85  115    60 0.457   8.12
 5.02 Intr + 228230 228352  123  2  0   44  113    62 0.027   4.00
 5.03 Intr + 239329 239472  144  1  0   75   75    60 0.026   2.80
 5.04 Intr + 265725 265794   70  0  1   50  101    70 0.333   3.68
 5.05 Term + 267958 268644  687  0  0   73   39   497 0.739  36.91
 5.06 PlyA + 269077 269082    6                               1.05

 6.06 PlyA - 269385 269380    6                               1.05
 6.05 Term - 269787 269782    6  0  0   97   37     0 0.007  -6.33
 6.04 Intr - 276037 275905  133  0  1   88   68   156 0.803  14.25
 6.03 Intr - 284435 284218  218  2  2   58  117   212 0.953  18.40
 6.02 Intr - 289613 289508  106  1  1   89  105    22 0.982   4.22
 6.01 Intr - 291617 291438  180  1  0  131  121    60 0.996  12.58

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  52365  52531  167  1  2   51   55   181 0.800   9.18
S.002 Term -  99863  99535  329  0  2    2   47   279 0.867  10.07
S.003 Intr - 100169  99964  206  1  2   58   75   119 0.943   6.44
S.004 Intr - 100651 100422  230  1  2   52  105   161 0.964  10.87
S.005 Init + 188828 188864   37  1  1   52  121    39 0.888   3.80


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595f:58232989_58524957|GENSCAN_predicted_peptide_1|431_aa
MDLDVVNMFVIAGGTLAIPILAFVASFLLWPSALIRIYYWEQEQVSPVGHSKSSEQLSLG
LSVPGAWPAHFHNTVDYGCSCRRYQMLQHESTESHTGDAVATADDIRYWRRTLGMQVRYV
HHEDYQFCYSFRGRPGHKPSILMLHGFSAHKDMWLSVVKFLPKNLHLVCVDMPGHEGTTR
SSLDDLSIDGQVKRIHQFVECLKLNKKPFHLVGTSMGGQVAGVYAAYYPSDVSSLCLVCP
AGLQYSTDNQFVQRLKELQGSAAVEKIPLIPSTPEEMSEMLQLCSYVRFKVPQQVRRCLP
CFSSPSVGCTHCPTSPSEMNQILQGLVDVRIPHNNFYRKLFLEIVSEKSRYSLHQNMDKI
KVPTQIIWGKQDQVLDVSGADMLAKSIANCQVELLENCGHSVVMERPRKTAKLIIDFLAS
VHNTDNNKKLD

>gi568815595f:58232989_58524957|GENSCAN_predicted_CDS_1|1296_bp
atggatcttgatgtggttaacatgtttgtgattgcgggcggcacgctggccatcccaatc
ctggcatttgtggcttcatttcttctgtggccttcagcactgataagaatctattattgg
gaacaagaacaggtgtccccagtaggccacagcaagtcttcagagcagctctctctgggt
ctaagtgtccctggagcatggccagcacacttccacaacaccgtggactatggctgctcc
tgcaggaggtaccaaatgcttcaacatgagtcaacagagagccacaccggggatgctgtg
gccactgcggatgacatcaggtactggcggaggacattgggcatgcaagtccgctatgtt
caccatgaagactatcagttctgttattccttccggggcaggcctgggcacaaaccctcc
atcctcatgctccacggattctctgcccacaaggatatgtggctcagtgtggtcaagttc
cttccaaagaacctgcacttggtctgcgtggacatgccaggacatgagggcaccacccgc
tcctccctggatgacctgtccatagatgggcaagttaagaggatacaccagtttgtagaa
tgcctgaagctgaacaaaaaacctttccacctggtaggcacctccatgggtggccaggtg
gctggggtgtatgctgcttactacccatcggatgtctccagcctgtgtctcgtgtgtcct
gctggcctgcagtactcaactgacaatcaatttgtacaacggctcaaagaactgcagggc
tctgccgccgtggagaagattcccttgatcccgtctaccccagaagagatgagtgaaatg
cttcagctctgctcctatgtccgcttcaaggtgccccagcaggtgaggcgatgcctgccc
tgcttcagctcgccctctgtgggctgcacccactgtccaaccagtcccagtgagatgaac
cagatcctgcaaggccttgtcgatgtccgcatccctcataacaacttctaccgaaagttg
tttttggaaatcgtcagtgagaagtccagatactctctccatcagaacatggacaagatc
aaggttccgacgcagatcatctgggggaaacaagaccaggtgctggatgtgtctggggca
gacatgttggccaagtcaattgccaactgccaggtggagcttctggaaaactgtgggcac
tcagtagtgatggaaagacccaggaagacagccaagctcataatcgactttttagcttct
gtgcacaacacagacaacaacaagaagctggactga

>gi568815595f:58232989_58524957|GENSCAN_predicted_peptide_2|85_aa
MTRLMMVTRLSSHCQHRQPQVHTLVGTSPREQILGPRALRQLGTPEEPAPGLSPGRKWRN
CKNSTQFGVGEGEKADEKVQSVVEG

>gi568815595f:58232989_58524957|GENSCAN_predicted_CDS_2|258_bp
atgactaggctgatgatggtcacaagactctcctcccactgccagcacaggcaaccccaa
gtccacaccctggttggtaccagccccagggagcaaatactgggccccagagccctgcgg
cagctggggacaccagaagagccagccccaggactgtcacctggcaggaaatggagaaat
tgcaagaacagcacccagtttggggttggggagggagaaaaggctgatgagaaggtccag
tctgtggttgaagggtga

>gi568815595f:58232989_58524957|GENSCAN_predicted_peptide_3|609_aa
MPAPAATYERVVYKNPSEYHYMKVCLEFQDCGVGLNAAQFKQLLISAVKDLFGEAAAAGR
PGMAFMEKPPAGKVLLDDTVPLTAAIEASQSLQSHTEYIIRVQRGISVENSWQIVRRYSD
FDLLNNSLQIAGLSLPLPPKKLIGNMDREFIAERQKGLQNYLNVITTNHILSNCELVKKF
LDPNNYSANYTEIALQQVSMFFRSEPKWEVVEPLKDIGWRIRKKYFLMKIKNQPKERLVL
SWADLGPDKYLSDKDFQCLIKLLPSCLHPYIYRVTFATANESSALLIRMFNEKGTLKDLI
YKAKPKDPFLKKYCNPKKIQGLELQQIKTYGRQILEVLKFLHDKGFPYGHLHASNVMLDG
DTCRLLDLENSLLGLPSFYRSYFSQFRKINTLESVDVHCFGHLLYEMTYGRPPDSVPVDS
FPPAPSMAVASGFASVFCGTKMCICSFQVAVLESTLSCEACKNGMPTISRLLQMPLFSDV
LLTTSEKPQFKIPTKLKEALRIAKECIEKRLIEEQKQKSKRSALENSEEHSAKYSNSNNS
GISALPPPPPPPPPPAAPLPPASTEAPAQLSSQAVNGMSRGALLSSIQNFQKGTLRKAKT
CDHSAPKIG

>gi568815595f:58232989_58524957|GENSCAN_predicted_CDS_3|1830_bp
atgcctgcccctgctgccacatatgaaagagtagtttacaaaaacccttccgagtaccac
tacatgaaagtctgcctagaatttcaagattgtggagttggactgaatgctgcacagttc
aaacagctgcttatttcggctgtgaaggacctgtttggggaggcggcggcggccgggcgt
cccgggatggccttcatggagaagccgccagccggcaaggtgctgctggacgacacggtg
ccgctgacagcagccatcgaggcgagccagagcctgcagtcccacacggaatatattatt
cgagtgcaaagaggaatttctgtggaaaacagctggcagattgttagaagatacagtgac
tttgatttgcttaacaacagcttacagattgcaggcctaagtctacctcttcctcccaaa
aaattgattggtaacatggatcgtgaattcatagctgaaaggcagaaaggtcttcagaac
tatctcaacgtgatcacaacaaatcatatcttgtctaattgtgagctggttaagaagttt
ttagatccaaacaactattccgcaaactatactgagattgccttgcaacaggtttccatg
ttcttccgatcagaaccaaagtgggaggtggtggaacctttgaaagacataggttggaga
ataaggaagaaatatttcttgatgaagattaaaaatcagccaaaggaacggctagtgtta
agctgggctgaccttggcccagacaagtatttgtcagataaagattttcagtgtctaatc
aaacttctgccttcttgtttgcacccttacatctatcgggttacctttgccacagctaat
gaatcctcagcgttgctaattaggatgtttaacgaaaagggaacattgaaggatctgatc
tacaaggcaaaaccaaaagacccatttctaaagaagtactgcaaccctaagaagattcag
ggcctggaactccagcaaataaaaacatatggacggcaaatattagaggtactgaagttt
cttcatgacaagggattcccttatgggcatcttcacgcctccaatgtgatgctcgatggg
gacacttgccggctgctggaccttgagaattccttattgggcctgccttccttctaccga
tcttatttttcacaattcaggaaaatcaatacattggaaagtgtggatgtccactgcttt
ggccacttactgtatgaaatgacttatggacgaccgccagactcggtgcctgtggactcc
ttccctcctgccccgtccatggctgtggcaagtggatttgccagcgtgttctgtggaact
aaaatgtgtatctgttcatttcaagtggccgtgttggagtctacgctgtcttgtgaagcc
tgtaaaaatggcatgcctaccatctcccggctcttacagatgccattattcagcgatgtt
ttactaaccacttctgaaaaaccacagtttaagatccctacaaagttaaaagaggcattg
agaattgccaaagaatgtatagagaagagactaattgaggaacagaaacagaagtcaaaa
cgatctgctcttgaaaatagtgaagagcattcagcgaagtacagcaactccaataattca
gggatatctgcattacctccacctcctccacctccaccaccaccagcagctcccttgcct
cctgcgagcaccgaggcacctgcccagctctcgtctcaggctgtgaatggcatgagccga
ggggccttgctcagctccatccagaatttccaaaaaggaactttgaggaaagccaaaacc
tgtgatcacagtgctccgaagatcggctga

>gi568815595f:58232989_58524957|GENSCAN_predicted_peptide_4|359_aa
MAAVSGLVRRPLREVSGLLKRRFHWTAPAALQVTVRDAINQGMDEELERDEKVFLLGEEV
AQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAI
DQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNS
EDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVV
SHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFG
VGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKKTLNI

>gi568815595f:58232989_58524957|GENSCAN_predicted_CDS_4|1080_bp
atggcggcggtgtctggcttggtgcggagaccccttcgggaggtctccgggctgctgaag
aggcgctttcactggaccgcgccggctgcgctgcaggtgacagttcgtgatgctataaat
cagggtatggatgaggagctggaaagagatgagaaggtatttctgcttggagaagaagtt
gcccagtatgatggggcatacaaggttagtcgagggctgtggaagaaatatggagacaag
aggattattgacactcccatatcagagatgggctttgctggaattgctgtaggtgcagct
atggctgggttgcggcccatttgtgaatttatgaccttcaatttctccatgcaagccatt
gaccaggttataaactcagctgccaagacctactacatgtctggtggccttcagcctgtg
cctatagtcttcagagggcccaatggtgcctcagcaggtgtagctgcccagcactcacag
tgctttgctgcctggtatgggcactgcccaggcttaaaggtggtcagtccctggaattca
gaggatgctaaaggacttattaaatcagccattcgggataacaatccagtggtggtgcta
gagaatgaattgatgtatggggttccttttgaatttcctccggaagctcagtcaaaagat
tttctgattcctattggaaaagccaaaatagaaaggcaaggaacacatataactgtggtt
tcccattcaagacctgtgggccactgcttagaagctgcagcagtgctatctaaagaagga
gttgaatgtgaggtgataaatatgcgtaccattagaccaatggacatggaaaccatagaa
gccagtgtcatgaagacaaatcatcttgtaactgtggaaggaggctggccacagtttgga
gtaggagctgaaatctgtgccaggatcatggaaggtcctgcgttcaatttcctggatgct
cctgctgttcgtgtcactggtgctgatgtccctatgccttatgcaaagattctagaggac
aactctatacctcaggtcaaagacatcatatttgcaataaagaaaacattaaatatttag

>gi568815595f:58232989_58524957|GENSCAN_predicted_peptide_5|375_aa
MGASLDQEHSGHPAGSRGVEVSSGSATVANSSGGRSIFCPNEVTLGGFLDGGRSPERPSH
DEKFGAFSSTPYPLGRLPDSGRYSQSQLPSELGEREKGKYKKTQPCGLTPYSMIQAHSQL
CVSSFPETWALEDASLEQMDNGDWGYMMTDPVTLNVGGHLYTTSLTTLTRYPDSMLGAMF
GGDFPTARDPQGNYFIDRDGPLFRYVLNFLRTSELTLPLDFKEFDLLRKEADFYQIEPLI
QCLNDPKPLYPMDTFEEVVELSSTRKLSKYSNPVAVIITQLTITTKVHSLLEGISNYFTK
WNKHMMDTRDCQVSFTFGPCDYHQEVSLRVHLMEYITKQGFTIRNTRVHHMSERANENTV
EHNWTFCRLARKTDD

>gi568815595f:58232989_58524957|GENSCAN_predicted_CDS_5|1128_bp
atgggtgcctcgctggatcaggagcacagcggacaccctgccggatccagaggggtggaa
gtcagcagcgggtctgcaacggtggcaaacagcagtggtggacggagcatcttttgtcct
aatgaggtgactcttggtgggttcctggatgggggccggtctccagaaagaccaagccat
gatgagaagtttggagcttttagctccactccctatcctctgggaaggcttccagactct
ggacggtattcccagagtcagctcccttctgaattgggagaaagagagaaaggaaaatac
aagaagacccaaccatgtggattaacaccctatagcatgatccaggcccacagccagctc
tgtgtttccagtttccctgaaacctgggctcttgaagacgcatcactggagcagatggat
aatggagactggggctatatgatgactgacccagtcacattaaatgtaggtggacacttg
tatacaacgtctctcaccacattgacgcgttacccggattccatgcttggagctatgttt
gggggggacttccccacagctcgagaccctcaaggcaattactttattgatcgagatgga
cctcttttccgatatgtcctcaacttcttaagaacttcagaattgaccttaccgttggat
tttaaggaatttgatctgcttcggaaagaagcagatttttaccagattgagcccttgatt
cagtgtctcaatgatcctaagcctttgtatcccatggatacttttgaagaagttgtggag
ctgtctagtactcggaagctttctaagtactccaacccagtggctgtcatcataacgcaa
ctaaccatcaccactaaggtccattccttactagaaggcatctcaaattattttaccaag
tggaataagcacatgatggacaccagagactgccaggtttcctttacttttggaccctgt
gattatcaccaggaagtttctcttagggtccacctgatggaatacattacaaaacaaggt
ttcacgatccgcaacacccgggtgcatcacatgagtgagcgggccaatgaaaacacagtg
gagcacaactggactttctgtaggctagcccggaagacagacgactga

>gi568815595f:58232989_58524957|GENSCAN_predicted_peptide_6|214_aa
XFLVKSYLQTQMSPGSTPQRSLSPSVAYLTAPDLARCPAQRAADFLCPELYTTAWAHVAV
RLIKDSVQHLQTLTQSGADQHEAWNQTTVIHLQAAKVHCYYVTVKGFTEALEKLENEPAI
QQVLKRLCDLHAIHGILTNSGDFLHDAFLSGAQVDMARTAYLDLLRLIRKDAILLTDAFD
FTDQCLNSALGCYDGNVYERLFQWAQKSPTNTQK

>gi568815595f:58232989_58524957|GENSCAN_predicted_CDS_6|645_bp
nngttcctggtgaagagctacctgcagactcagatgtcccctggctccacgccacagaga
tctctctctccatctgtcgcatatctcaccgcacctgacctggccaggtgtccagcccag
agggcagccgacttcctctgcccggagctctacaccacggcctgggcacatgtggcagta
aggctcataaaggactcagtgcagcatttacagaccctgacgcaatccggagctgaccag
cacgaggcttggaaccagaccactgtcatacacctccaggctgctaaggtgcactgctac
tatgtcactgtgaagggttttacagaagctctggagaaactagaaaatgaaccagcgatt
cagcaggtgctcaagcgcctctgtgacctccatgccatacatggaatcttgactaactcg
ggtgactttctccatgacgccttcctgtctggtgcccaagtggacatggcaagaacagcc
tacctggacctgctccgcctgatccggaaggatgccatcctgttaactgatgcttttgac
ttcaccgatcagtgtttaaattcagcacttggctgttatgatggaaacgtctacgaacgc
ctgttccagtgggctcagaagtcaccaaccaatactcagaaataa