GENSCAN 1.0	Date run:  7-Nov-116	Time: 17:36:37

Sequence gi568815591f:140307647_140526147 : 218501 bp : 46.55% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   2549   2572   24  1  0  114   89     9 0.311   1.82
 1.02 Intr +   7551   7687  137  2  2   65  119    47 0.417   4.87
 1.03 Term +   8864   8897   34  2  1   67   48    49 0.260  -4.14
 1.04 PlyA +   9839   9844    6                               1.05

 2.16 PlyA -  15178  15173    6                               1.05
 2.15 Term -  15825  15788   38  1  2   85   32    59 0.097  -2.50
 2.14 Intr -  16546  16402  145  1  1   69   57    90 0.117   3.86
 2.13 Intr -  22769  22627  143  0  2   87   53   118 0.915   8.27
 2.12 Intr -  29703  29634   70  0  1   93   25     9 0.009  -6.15
 2.11 Intr -  35917  35766  152  2  2   70   94   124 0.990  11.08
 2.10 Intr -  37617  37570   48  1  0  117   96    61 0.997   8.45
 2.09 Intr -  38324  38223  102  0  0   19   72    89 0.575   0.55
 2.08 Intr -  41121  40980  142  0  1   61   57   152 0.995   9.33
 2.07 Intr -  43805  43627  179  0  2   86  107    73 0.993   8.64
 2.06 Intr -  44500  44416   85  1  1   79   73    93 0.990   6.29
 2.05 Intr -  48118  48022   97  0  1   91   92   -31 0.853  -2.39
 2.04 Intr -  51139  50994  146  1  2   97   67   180 0.959  15.88
 2.03 Intr -  62036  61944   93  2  0   93  103    38 0.972   5.96
 2.02 Intr -  72744  72636  109  2  1   94   99    54 0.987   7.39
 2.01 Init -  74880  74792   89  0  2   87  115   -45 0.644  -1.67
 2.00 Prom -  75524  75485   40                              -5.06

 3.00 Prom +  87759  87798   40                              -2.96
 3.01 Init +  89156  89181   26  1  2   63   80    13 0.282  -3.79
 3.02 Intr +  90659  90869  211  2  1   45   54   137 0.103   4.92
 3.03 Intr +  96422  96571  150  1  0   67  115    50 0.105   5.96
 3.04 Intr +  99989 100201  213  1  0   48   77   159 0.246   9.71
 3.05 Intr + 104228 104411  184  1  1  115   52   306 0.697  29.06
 3.06 Term + 118236 118504  269  1  2   86   44   373 0.553  28.36
 3.07 PlyA + 123053 123058    6                               1.05

 4.02 PlyA - 123513 123508    6                              -0.45
 4.01 Sngl - 128009 127668  342  2  0   62   54   211 0.817  11.30
 4.00 Prom - 132268 132229   40                              -4.66

 5.11 PlyA - 133172 133167    6                               1.05
 5.10 Term - 139187 139075  113  0  2   51   49   167 0.411   7.82
 5.09 Intr - 147083 146957  127  2  1   97   75   183 0.203  18.15
 5.08 Intr - 147587 147449  139  1  1   68   60    70 0.989   2.67
 5.07 Intr - 148254 148144  111  2  0   54   64   104 0.894   4.09
 5.06 Intr - 149220 149006  215  0  2   82   50   315 0.996  24.61
 5.05 Intr - 151587 151361  227  1  2   64  106   218 0.805  18.90
 5.04 Intr - 152290 152061  230  0  2   80   86   103 0.930   6.81
 5.03 Intr - 164365 164237  129  0  0  106  110    61 0.994   9.91
 5.02 Intr - 171340 171281   60  0  0   70   62    78 0.614   1.25
 5.01 Init - 171698 171514  185  2  2   79   91   162 0.964  12.29
 5.00 Prom - 173301 173262   40                              -7.66

 6.00 Prom + 180951 180990   40                              -1.66
 6.01 Init + 188092 188211  120  0  0   83   81   105 0.963   8.88
 6.02 Term + 199439 199510   72  1  0  116   49    41 0.625   0.91
 6.03 PlyA + 203412 203417    6                               1.05

 7.06 PlyA - 204238 204233    6                               1.05
 7.05 Term - 209867 209767  101  0  2   45   50    67 0.222  -3.11
 7.04 Intr - 212072 211986   87  0  0   90   82    98 0.998   9.34
 7.03 Intr - 214454 214209  246  0  0  103  100   427 0.992  42.83
 7.02 Intr - 215778 215661  118  0  1  107  127   158 0.989  21.64
 7.01 Intr - 218146 218105   42  1  0  110  109    67 0.986   9.44

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------



Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815591f:140307647_140526147|GENSCAN_predicted_peptide_1|64_aa
KCRFTETQHACSAATGKGKQERSEAVHSCTPTQSHGFLDKSPNLDVCSVLARCCSWKSLI
GNRN

>gi568815591f:140307647_140526147|GENSCAN_predicted_CDS_1|195_bp
aaatgcaggttcacagaaacacagcatgcgtgctctgcagcaacagggaagggaaaacag
gaacgctctgaagcagtacattcctgcacacccacacagagccatggcttcctagacaag
tccccgaacctagatgtctgcagtgtcctggcacgctgctgttcttggaagtcactgatt
ggaaaccggaactga

>gi568815591f:140307647_140526147|GENSCAN_predicted_peptide_2|545_aa
MAWPNVFQRGSLLSQFSHHHVVVFLLTFFSYSLLHASRKTFSNVKVSISEQWTPSAFNTS
VELPVEIWSSNHLFPSAEKATLFLGTLDTIFLFSYAVVFVFGALTEWLRFYNKWLYCCLW
IVNGLLQSTGWPCVVAVMGNWFGKAGRGVVFGLWSACASVGNILGACLASSVLQYGYEYA
FLVTASVQFAGGIVIFFGLLVSPEEIGLSGIEAEENFEEDSHRPLINGGENEDEYEPNYS
IQDDSSVAQVKAISFYQACCLPGVIPYSLAYACLKLVNYSFFFWLPFYLSNNFGWKEAEA
DKLSIWYDVGGIIGGTLQGFISDVLQKRAPVLALSLLLAVGSLIGYSRSPNDKSINALLM
TVTGFFIGGPSNMISSAISADLGRQELIQRSSEALATVTGIVDGSGSIGAAVGQYLVSLI
RDKLGWMWVFYFFILMVRRCTPAINGRRLSALPRFSDYVGFECILLSSGSWQPRQLSLRA
QRQRTNSLVNGTFAVLFRCLDTESDSLTCWIKCEILHESSSLAIKSETDQRPVIYSQSYV
TITTI

>gi568815591f:140307647_140526147|GENSCAN_predicted_CDS_2|1638_bp
atggcctggccaaatgtttttcaaagagggtctctgctgtcccagttcagccatcatcat
gttgtagtgttcctgctcactttcttcagttattcgttgctccatgcttcacgaaaaaca
tttagcaatgtcaaagtcagtatctctgagcagtggaccccaagtgcttttaacacgtca
gttgagctgcctgtggagatctggagcagcaaccatttgttccccagtgcagagaaagcg
actcttttcctcggcacactggataccattttcctcttctcctatgctgtggtgtttgtc
tttggtgcgctcacagaatggctgcgtttctacaacaaatggctgtactgctgcctgtgg
attgtgaacggcctgctgcagtccactggttggccctgtgtggttgctgttatgggcaac
tggtttgggaaagccggacgaggagttgtttttggtctctggagtgcctgtgcttcggtg
ggcaacattttgggagcgtgcctagcttcttctgttcttcagtatggttatgagtatgcc
tttctggtgacggcgtctgtgcagtttgctggtgggatcgttatcttctttggactcctg
gtgtcaccagaagaaattggtctctcgggtattgaggcagaagaaaactttgaagaagac
tcacacaggccattaattaatggtggtgaaaatgaagacgaatatgagccgaattattca
atccaagatgatagttctgttgcccaagtcaaggcgataagcttctaccaggcatgttgc
cttcctggagtcataccgtactcactggcctacgcctgcttgaagttagtgaattactcc
ttcttcttctggctccccttttatctgagtaacaacttcggctggaaggaggcggaagcc
gacaagctgtccatttggtacgacgttggagggatcataggtggaactttgcaaggcttc
atctctgatgtactacagaagagagcgccggttcttgccctgagtctgcttctggcagtt
gggtccctcatcgggtatagtcgttctccaaatgataagtccatcaatgcccttctgatg
actgttacaggattttttattggtggaccttctaatatgattagttctgctatttctgcg
gacttgggtcgccaggagctcatccaaaggagcagtgaagctttggccactgtcacagga
attgtggatggttcggggagcattggagctgcagtgggccagtatttagtgtctctgatc
cgggacaagctaggatggatgtgggttttctactttttcattctcatggtaagacgctgc
acgcctgcaattaatggccgcagactgtcggcgctgcccaggttctcggactacgtgggt
tttgagtgcattctcctctcctctggctcttggcagcctcgccagctctccctgagggct
cagcggcagcgaacaaatagtcttgttaacgggacttttgcggtgttattccgctgctta
gacaccgagagtgactctcttacttgctggattaagtgtgagatcctgcacgaatcctca
tctctagctataaaatctgagacagaccagagacctgttatttattcgcagagttatgtg
accatcaccactatctaa

>gi568815591f:140307647_140526147|GENSCAN_predicted_peptide_3|350_aa
MVSFKRQARGAATYISPPPSRPGKPLGLDPPPPQQVFGPTHHRLRTRDPQWSPLSSPGSA
RRVSLAPLPASPAASSPLADAKPDTWGQNYTSHQAARQEEEGGTGGLKSKPRRKRKHYLL
TSRGERARQVARTMHFSSSARAADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQ
NTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFES
IPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKN
IEEVFVLMAKELIARNSLHLYGESALNGLPLDSSPVLMAQGPSEKTHCTC

>gi568815591f:140307647_140526147|GENSCAN_predicted_CDS_3|1053_bp
atggtgtcattcaagagacaagccaggggggccgccacctacatctccccaccgccctcc
cgacccgggaagcccctcggattggacccgcccccgccccagcaggtcttcggccccacg
catcaccgcttgcgcacccgagatccgcagtggtcgccgctctccagccccggctccgct
cgccgggtcagcttggctccgctgcccgcctcccccgccgccagctcacccctggcggac
gccaaacccgacacctggggccagaactacacttcccaccaagcagcgaggcaggaggaa
gaagggggcactggggggctgaaaagcaaacccagaagaaagcgaaaacattacctgctg
accagcagaggtgagagagcgagacaggtggcaagaaccatgcacttctccagctcagcc
agggcagcagatgagaactttgactatttgttcaagattatcctcattggggattccaat
gtggggaagacgtgtgtggtgcagcatttcaagtctggagtctacactgagacacagcag
aacacgattggagtggactttaccgtgcgttcccttgatattgacggcaaaaaagtgaag
atgcaggtgtgggacacagctggccaggagcgcttccgcaccatcacccaaagctactac
cgcagtgcccacgcagccatcatcgcctatgacctcacccggcggtccacgttcgagtcc
atccctcactggattcatgagatagagaaatatggagctgcaaatgtggtcattatgctg
attggaaataaatgtgacctctgggaaaagcggcacgtcctgttcgaggatgcctgcaca
ctggctgagaagtacggcctcctggccgttttggagacatctgccaaggagtcaaagaac
atagaagaagtcttcgtgctcatggccaaggagctgatcgcgcgcaacagcctgcaccta
tatggggagagtgccctgaacggcctccccctggactccagccccgttcttatggcccag
ggtccaagtgaaaagacccactgcacttgctaa

>gi568815591f:140307647_140526147|GENSCAN_predicted_peptide_4|113_aa
MGHSGGSWGTGSSALRGGFTLVGKDAGAQRVLAGHREGPRGPAGEALLPKACEGSSVVPR
PGTIQGDFSAHISRNFFQASNSVEGARRWIPLWLPSRDLVSWARRQHSRSHPA

>gi568815591f:140307647_140526147|GENSCAN_predicted_CDS_4|342_bp
atggggcacagcggcggctcgtgggggacgggatccagcgctttgagaggtggcttcacg
ctggtggggaaggacgcaggcgcacagcgcgtccttgccgggcaccgcgagggcccgcga
gggcccgcgggggaagccctgctacccaaggcctgcgaagggtccagtgtggtcccgcgc
cccgggaccatacagggagatttcagcgcccacatcagcaggaacttcttccaggcaagc
aactccgtggaaggggctcggagatggatcccgctgtggctcccgagcagggacctggtg
agctgggcacggcgccagcacagccgcagccacccagcctga

>gi568815591f:140307647_140526147|GENSCAN_predicted_peptide_5|511_aa
MAEAATPGTTATTSGAGAAAATAAAASPTPIPTVTAPSLGAGGGGGGSDGSGGGWTKQVT
CSHCVNPRWAAEPSALSAEAWRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIY
GDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVG
AGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAAVG
ECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKDMV
CGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITSNF
VIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRREEP
QRQKVGTSSRYRAQRRNHFWELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAAFISTS
FLSMDGQCFIAGVLNPRTVYKYQYEYQSVAC

>gi568815591f:140307647_140526147|GENSCAN_predicted_CDS_5|1536_bp
atggcggaggctgcaactcccggaacaacagccacaacatcaggagcaggagcggcagcg
gcgacggcggcagcagcctcccccaccccgatccccacagtcaccgccccgtccctgggg
gcgggcggagggggcggcggcagcgacggcagcggcggcggctggactaaacaggtcacc
tgcagtcactgcgtcaacccccgctgggccgcggagccctcagcgctgtccgcggaggcc
tggcggtattttatgcatggggtttgtaaggaaggagacaactgtcgctactcgcatgac
ctctctgacagtccgtatagtgtagtgtgcaagtattttcagcgagggtactgtatttat
ggagaccgctgcagatatgaacatagcaaaccattgaaacaggaagaagcaactgctaca
gagctaactacaaagtcatcccttgctgcttcctcaagtctctcatcgatagttggacca
cttgttgaaatgaatacaggcgaagctgagtcaagaaattcaaactttgcaactgtagga
gcaggttcagaggactgggtgaatgctattgagtttgttcctgggcaaccctactgtggc
cgtactgcgccttcctgcactgaagcacccctgcagggctcagtgaccaaggaagaatca
gagaaagagcaaaccgccgtggagacaaagaagcagctgtgcccctatgctgcagtggga
gagtgccgatacggggagaactgtgtgtatctccacggagattcttgtgacatgtgtggg
ctgcaggtcctgcatccaatggatgctgcccagagatcgcagcatatcaaatcgtgcatt
gaggcccatgagaaggacatggagctctcatttgccgtgcagcgcagcaaggacatggtg
tgtgggatctgcatggaggtggtctatgagaaagccaaccccagtgagcgccgcttcggg
atcctctccaactgcaaccacacctactgtctcaagtgcattcgcaagtggaggagtgct
aagcaatttgagagcaagatcataaagtcctgcccagaatgccggatcacatctaacttt
gtcattccaagtgagtactgggtggaggagaaagaagagaagcagaaactcattctgaaa
tacaaggaggcaatgagcaacaaggcgtgcaggtattttgatgaaggacgtgggagctgc
ccatttggagggaactgtttttacaagcatgcgtaccctgatggccgtagagaggagcca
cagagacagaaagtgggaacatcaagcagataccgggcccaacgaaggaaccacttctgg
gaactcattgaggaaagagagaacagcaacccctttgacaacgatgaagaagaggttgtc
acctttgagctgggcgagatgttgcttatgcttttggctgcagcatttatcagtacttca
tttctttcaatggatggacagtgttttattgcaggggtcctcaaccctcggaccgtgtac
aagtaccagtacgagtaccaatccgtggcctgttag

>gi568815591f:140307647_140526147|GENSCAN_predicted_peptide_6|63_aa
MREERTGQREQQVWPGGWALLGVIQDLLTPLWLDPGSQAKAPPCFAQGSTSPLSPESDNV
NIS

>gi568815591f:140307647_140526147|GENSCAN_predicted_CDS_6|192_bp
atgagggaagagcgcacaggccagagggaacagcaggtatggcccggaggctgggccctg
cttggtgtgatccaggacctgctgacgccactgtggctggacccagggagccaggccaag
gcacccccttgttttgcacagggctccacctcccccctgtctcctgaatctgacaatgtc
aacatcagctga

>gi568815591f:140307647_140526147|GENSCAN_predicted_peptide_7|197_aa
VLVVDLVNSRFLRQMDDEDSILPRKLQVALEHILEQRNELACEQDEGPLDGRHGPESSPL
NEVVSEAFVRFFVEIVGHYSLFLTSGEREERTLQREAFRKAVSSKSLRHFLEVFMETQMF
RGFIQERELRRQDAKGLFEVRAQEYLETLPSGEHSGVNKFLKGLALTSDPHRNTKGRGAD
LNNGPEGPYCLAGVLNL

>gi568815591f:140307647_140526147|GENSCAN_predicted_CDS_7|594_bp
gtccttgtggttgacctcgtcaacagccggttcctcagacagatggacgatgaggactcc
atcctgccccggaagcttcaggtggccctggaacacattctggaacagaggaacgagctg
gcttgtgagcaggacgaagggcccctagacggcaggcacggtccagagtccagccccttg
aacgaggtggtgtctgaagcctttgtccgcttcttcgtggagattgtgggacactactct
ttgttcctgacgtcgggcgagcgtgaggagagaaccctgcagcgggaggccttccgcaaa
gctgtctcctccaagagcctccgccacttcctggaggtcttcatggagactcagatgttt
cggggcttcatccaggagcgggagctgcgccggcaggatgccaaaggtctgtttgaggtc
cgagcccaagagtatctggaaacactccccagtggagagcacagcggtgtcaataagttc
ctgaagggactagctctcaccagcgaccctcacagaaacacaaaagggaggggcgccgac
ctcaacaatggcccagaggggccatactgcctggcaggggttctcaacctttag