GENSCAN 1.0	Date run:  7-Nov-116	Time: 16:59:51

Sequence gi568815595r:20061108_20284027 : 222920 bp : 38.51% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  11226  11352  127  2  1  108   95    21 0.703   4.13
 1.02 Intr +  34156  34301  146  2  2   18  100    79 0.247   1.18
 1.03 Intr +  38755  38847   93  0  0   76   98    65 0.976   5.54
 1.04 Intr +  40180  40361  182  0  2   57   84   135 0.945   7.74
 1.05 Intr +  50489  50680  192  2  0  107   78    77 0.954   6.29
 1.06 Intr +  53775  53881  107  0  2   71  111    17 0.931   1.24
 1.07 Intr +  58491  58616  126  1  0   70  115    58 0.927   6.43
 1.08 Intr +  61561  61706  146  2  2   48   59   189 0.472  11.08
 1.09 Intr +  64798  65006  209  0  2   99  105   193 0.995  19.05
 1.10 Intr +  66316  66442  127  1  1   83  116    69 0.978   8.96
 1.11 Intr +  75835  75945  111  0  0   71   77    99 0.885   6.76
 1.12 Intr +  79114  79257  144  0  0   78   99   118 0.998  11.46
 1.13 Intr +  85209  85323  115  2  1  122   45    75 0.974   5.70
 1.14 Term +  91225  91418  194  2  2   79   34   191 0.970   9.40
 1.15 PlyA +  92307  92312    6                               1.05

 2.06 PlyA -  92401  92396    6                               1.05
 2.05 Term - 113943 113134  810  0  0    2   39   399 0.073  18.59
 2.04 Intr - 122697 122501  197  1  2  118   68   159 0.974  15.11
 2.03 Intr - 125131 124952  180  2  0   15   69   227 0.056  12.42
 2.02 Intr - 130141 130026  116  0  2   72   58   141 0.321   8.67
 2.01 Init - 133926 133817  110  0  2   62   70    57 0.330   1.04
 2.00 Prom - 165541 165502   40                              -3.15

 3.00 Prom + 176783 176822   40                              -3.45
 3.01 Init + 178684 178776   93  0  0   61   81    54 0.393   2.43
 3.02 Intr + 179176 179356  181  0  1   92   68    50 0.418   1.92
 3.03 Intr + 180603 180743  141  1  0  -44  103   151 0.133   2.80
 3.04 Intr + 189311 189456  146  0  2   69    3   140 0.434   2.68
 3.05 Term + 189612 189743  132  2  0  101   48    89 0.486   3.31
 3.06 PlyA + 191033 191038    6                               1.05

 4.03 PlyA - 191451 191446    6                               1.05
 4.02 Term - 193906 193649  258  1  0   10   42   220 0.334   4.17
 4.01 Init - 199907 199899    9  2  0   89   74     1 0.293  -0.55
 4.00 Prom - 200310 200271   40                              -3.65

 5.09 PlyA - 201074 201069    6                               1.05
 5.08 Term - 202071 201182  890  1  2   43   36   278 0.358   9.73
 5.07 Intr - 207535 207308  228  2  0   44   87   169 0.724   9.32
 5.06 Intr - 208860 208698  163  0  1   29   67   126 0.439   3.23
 5.05 Intr - 209461 209242  220  0  1   70   49   134 0.229   5.08
 5.04 Intr - 211147 210979  169  2  1   26  103   106 0.111   3.98
 5.03 Intr - 215347 215130  218  0  2   72   73   148 0.421   8.92
 5.02 Intr - 215567 215531   37  0  1  101   98     1 0.436  -1.20
 5.01 Intr - 217801 217613  189  2  0   60   99    75 0.459   4.44

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 122920 122779  142  1  1   79   52    95 0.976   5.34
S.002 Init + 124683 124742   60  2  0   63  -15   119 0.923   0.40
S.003 Term + 124868 125305  438  1  0  122   37   259 0.924  18.49


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815595r:20061108_20284027|GENSCAN_predicted_peptide_1|672_aa
AEESCKCNGWKNPNPSPTPPRADLQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRL
LGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKSILQRGKPVVEGSLEKKPPFEKPSI
EQGVNNFVQYKFSHLPAKERQTIVELAKMFLNRINYWHLEAPSQRRLRSPNDDISGYKEN
YTRWLCYCNVPQFCDSLPRYETTQVFGRTLLRSVFTVMRRQLLEQARQEKDKLPLEKRTL
ILTHFPKFLSMLEEEVYSQNSPIWDQDFLSASSRTSQLGIQTVINPPPVAGTISYNSTSS
SLEQPNAGSSSPACKASSGLEANPGEKRKMTDSHVLEEAKKPRVMGDIPMELINEVMSTI
TDPAAMLGPEVSRTNFLSAHSARDEAARLEERRGVIEFHVVGNSLNQKPNKKILMWLVGL
QNVFSHQLPRMPKEYITRLVFDPKHKTLALIKDGRVIGGICFRMFPSQGFTEIVFCAVTS
NEQVKGYGTHLMNHLKEYHIKHDILNFLTYADEYAIGYFKKQGFSKEIKIPKTKYVGYIK
DYEGATLMGCELNPRIPYTEFSVIIKKQKEIIKKLIERKQAQIRKVYPGLSCFKDGVRQI
PIESIPGINLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFF
FSKIKEAGLIDK

>gi568815595r:20061108_20284027|GENSCAN_predicted_CDS_1|2019_bp
gccgaggagtcttgtaaatgtaatggctggaaaaaccctaacccctcacccactcccccc
agagccgacctgcagcaaataattgtcagtctaacagaatcctgtcggagttgtagccat
gccctagctgctcatgtttcccacctggagaatgtgtcagaggaagaaatgaacagactc
ctgggaatagtattggatgtggaatatctctttacctgtgtccacaaggaagaagatgca
gataccaaacaagtttatttctatctatttaagctcttgagaaagtctattttacaaaga
ggaaaacctgtggttgaaggctctttggaaaagaaacccccatttgaaaaacctagcatt
gaacagggtgtgaataactttgtgcagtacaaatttagtcacctgccagcaaaagaaagg
caaacaatagttgagttggcaaaaatgttcctaaaccgcatcaactattggcatctggag
gcaccatctcaacgaagactgcgatctcccaatgatgatatttctggatacaaagagaac
tacacaaggtggctgtgttactgcaacgtgccacagttctgcgacagtctacctcggtac
gaaaccacacaggtgtttgggagaacattgcttcgctcggtcttcactgttatgaggcga
caactcctggaacaagcaagacaggaaaaagataaactgcctcttgaaaaacgaactcta
atcctcactcatttcccaaaatttctgtccatgctagaagaagaagtatatagtcaaaac
tctcccatctgggatcaggattttctctcagcctcttccagaaccagccagctaggcatc
caaacagttatcaatccacctcctgtggctgggacaatttcatacaattcaacctcatct
tcccttgagcagccaaacgcagggagcagcagtcctgcctgcaaagcctcttctggactt
gaggcaaacccaggagaaaagaggaaaatgactgattctcatgttctggaggaggccaag
aaaccccgagttatgggggatattccgatggaattaatcaacgaggttatgtctaccatc
acggaccctgcagcaatgcttggaccagaggtcagcaggaccaattttctgtcagcacac
tcggccagggatgaggcggcaaggttggaagagcgcaggggtgtaattgaatttcacgtg
gttggcaattccctcaaccagaaaccaaacaagaagatcctgatgtggctggttggccta
cagaacgttttctcccaccagctgccccgaatgccaaaagaatacatcacacggctcgtc
tttgacccgaaacacaaaacccttgctttaattaaagatggccgtgttattggtggtatc
tgtttccgtatgttcccatctcaaggattcacagagattgtcttctgtgctgtaacctca
aatgagcaagtcaagggctatggaacacacctgatgaatcatttgaaagaatatcacata
aagcatgacatcctgaacttcctcacatatgcagatgaatatgcaattggatactttaag
aaacagggtttctccaaagaaattaaaatacctaaaaccaaatatgttggctatatcaag
gattatgaaggagccactttaatgggatgtgagctaaatccacggatcccgtacacagaa
ttttctgtcatcattaaaaagcagaaggagataattaaaaaactgattgaaagaaaacag
gcacaaattcgaaaagtttaccctggactttcatgttttaaagatggagttcgacagatt
cctatagaaagcattcctggaattaatctgaaaaccatgagtgaacgcctcaagaatagg
tactacgtgtctaagaaattattcatggcagacttacagcgagtctttaccaattgcaaa
gagtacaacccccctgagagtgaatactacaaatgtgccaatatcctggagaaattcttc
ttcagtaaaattaaggaagctggattaattgacaagtga

>gi568815595r:20061108_20284027|GENSCAN_predicted_peptide_2|470_aa
MLDIINHQRNANEIHSEIPFIPTRMARIKKKDNDKCCSEGQTSKAKVSAGGTPSGGSERN
PLLASSSFWQLSAFLANQWRSEAENFECGGGSSRRRRTVVRSWRAQCAGLAVAGELRRAL
KCEEEEDSCCRSSGQANTSTLLKNYQDNNKMLVLALENEKSKVKEAQDIILQLRKECYYL
TCQLYALKGKLTSQQTVEPAQIPTIPQDTLGVDFDSGEAKSTDNVLPRTVSVRSSLKKHC
NSICQFDSLDDFETSHLAGKSFEFERVGFLDPLVNMHIPENVQHNACQWSKDQVNLSPKL
IQPGTFTKTKEDILESKSEQTKSKQRDTQERKREEKRKANRRKSKRMSKYKENKSENKKT
VPQKKMHKSVSSNDAYNFNLEEGVHLTPFRQKVSNDSNREENNESEVSLCESSGSGDDSD
DLYLPTCKYIQNPTSNSDRPVTRPLAKRALKYTDEKETEGSKPTKTPTSK

>gi568815595r:20061108_20284027|GENSCAN_predicted_CDS_2|1413_bp
atgcttgatatcattaaccatcagagaaatgcaaatgaaatccacagtgagataccattc
atacccactaggatggctagaatcaagaagaaagataatgacaagtgttgttctgaaggc
cagacgtccaaagccaaggtgtcagcaggtggtactccctctggaggctcagaacgaaat
ccactccttgcctcttccagtttctggcagctgtcggcattcctagccaaccaatggagg
agcgaggcggaaaatttcgaatgtggcggcggtagttccaggcgacggcggacggtggta
cggtcctggagggcccagtgcgcggggctagccgtggctggagagcttcgaagagccttg
aaatgtgaggaggaggaagatagctgttgcagaagtagtggccaagccaacacttctaca
ctgctgaaaaattaccaagacaacaacaaaatgttagttttagctttggaaaatgaaaaa
tccaaagtgaaagaagcccaagatatcatcctacagctgagaaaagaatgttactatctc
acatgtcagctatatgcattgaaaggaaaacttacatcacaacaaacagtagaacctgct
cagatacctactattcctcaagacacactgggagttgattttgattcaggtgaagctaag
tctactgataatgtcttacctagaactgtatctgttcgtagcagtttaaagaaacattgt
aacagtatatgtcagtttgatagcttggatgattttgaaaccagtcatttggcagggaag
tcttttgaattcgaaagagttggatttttagacccactagtaaacatgcacatacctgaa
aatgtacaacacaatgcttgtcaatggagcaaggaccaagttaacttatcaccaaagctg
attcagccaggaacgtttactaaaacaaaagaagacattttagaatctaaatctgaacaa
actaaaagtaagcaaagagatacacaagaaagaaaaagagaagagaaaagaaaagctaac
aggagaaaatcaaaacgtatgtcaaaatataaagagaataaaagcgaaaataaaaaaact
gttccccaaaaaaaaatgcacaaatctgtcagttccaatgatgcttacaattttaatttg
gaagagggtgttcatcttactcctttccgacaaaaagtgagcaatgactctaatagagaa
gaaaacaacgagtctgaagtgagcctctgtgaatcaagtggttcaggagatgattccgat
gacctctatttgcccacttgcaagtacattcagaatcccacgagcaattcagatagacca
gtcaccaggcctctagctaaaagagcactgaaatacacagatgaaaaagagacggagggt
tctaagccaacaaaaactcctaccagtaagtga

>gi568815595r:20061108_20284027|GENSCAN_predicted_peptide_3|230_aa
MGIHRNHEGRPRCQGGECGQTVPMMVLQLIEAWVGGELLQLQFLLGDETGSQGQFDDLEP
VCVCHCWVPQPAPLRSGNSETFSATPLDRTPEVPVSPDEKSWQNNSGITRNLNVMTPTKD
HTSSVAMVNNKNGNSEMTAFSPHGWLHRLELGASGVSGTGHKLLVDRLFTAVEDSGPIPT
APLHSAPALTPSGCHQALPLVPFGVVARAVPGPLCAVTGAGEAGMQEAMS

>gi568815595r:20061108_20284027|GENSCAN_predicted_CDS_3|693_bp
atgggaatccacaggaatcatgaaggacgccccaggtgccagggaggagaatgtgggcaa
acagtccccatgatggtgttacagctgatagaagcctgggtgggaggagagctgctacag
ctgcagtttctcctaggtgacgagacaggcagccagggccagtttgatgacctggaacca
gtctgtgtgtgtcattgctgggtgcctcagcctgctcctctgagatcaggaaacagtgaa
actttctctgctacacccctagacagaactccagaagtgccagtatctccagatgagaag
agctggcagaataattctggtatcacaagaaatctgaatgtcatgacaccaacaaaggat
cacactagctctgtagcaatggtgaataataaaaatggaaactcagaaatgacagcattc
agcccccatggctggttacaccggttggagttgggtgccagtggtgtttctggtacaggg
cacaagctgctggtggatcgactattcacagctgtagaggacagcggccccattcccaca
gctccactacacagtgctccagctttaacaccatctggatgccaccaagccttaccactt
gtgccctttggagtggtggccagagctgtacctgggccgctttgtgctgtgactggagca
ggagaggctgggatgcaggaagcaatgtcctga

>gi568815595r:20061108_20284027|GENSCAN_predicted_peptide_4|88_aa
MAQWVQPKEGEPKQGGASPHLGSLTASGNSLSQPKEAIRDCTVHSGPDTAIFPWSSKPID
QEIPSDAYATRAMGVQHKTEQPFVQTPS

>gi568815595r:20061108_20284027|GENSCAN_predicted_CDS_4|267_bp
atggcacagtgggtgcagcccaaggagggcgagccaaagcagggtggggcatcgcctcac
ctgggaagcctcacggcgtcggggaattccctctcccagccaaaggaagccattagggac
tgtactgtgcactctggcccagatactgcaattttcccatggtcttcgaaacccatagac
caggagattccctctgatgcctatgccaccagggccatgggtgtccagcacaaaactgag
cagccatttgtgcagacacccagctag

>gi568815595r:20061108_20284027|GENSCAN_predicted_peptide_5|704_aa
XPQNQACLENSPLRKACFLAQLNCLDRLKPKANLEDPSCQSNLKEVSVLACLAVHNFSNW
ADADSFLFKQAAVVFSVTKVCPELVPSSGFLISLTSRMKPRTLMVSVTVLKDGVSGVCSF
RCSDVSRVSSFRWVRGLADFRSEATDLRSQQMFATPVPMICVEVPVGIHTGDSLLTGREF
VPFFDCHSIIYLTNIPGISKLSGCRVNQQLVRTLELNGFPLCRPSAQPRSTGKAEADSKQ
TNAPNSEESGLLEHPFPESLTPVSLVQQLCYSYLTGHQVRGLADFRSEAADLHSELLKLV
RPELFVPPGGFVVSLTSGVKPQTFAVSVTAVKEIQATIREYYKHLSTNKLENLEEMDKFL
DKYTFPRLSQEEVESLNRPITSSEIEAVIAHQPKKAQDQMDSQPNSTTDAEKAFDKIQQP
FMLKTLNKLGIDGTYLKIIRAIYDKPTANIILNGQKLEAFPLKTGTRQGCPLSPLLFNIV
LEVLARAIRQEKEIKGIQSGKEEVKLSLFADDMIVYLENPIVSAQNLVKLISNFSKVSGY
KINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIHLTRDVKHLLKENYKPLLNK
IKEDTNKWKNIPCSWVGRINIMKMAILPKVIYRFNAIPIKLPMTFFTELEKATLKFIWNQ
KRAHIAKSILSQKNKAGGITLPDFKVYYKATVTKTAWYWYQTEI

>gi568815595r:20061108_20284027|GENSCAN_predicted_CDS_5|2115_bp
ngtccacagaaccaagcctgtttggaaaacagtcctttaagaaaagcttgtttccttgct
caactcaactgtcttgaccgccttaaaccaaaagcaaatttggaagacccctcctgccaa
agcaatctaaaagaagtgagtgtactagcttgcttagcagtccacaacttcagcaactgg
gctgatgcagattccttcctgtttaaacaggctgcagtcgttttcagtgtcacaaaagtg
tgtccagaattggttccttccagtgggttcttgatctcgctgacttcacgaatgaagcca
cggaccctcatggtgagtgttacagttcttaaagatggtgtatctggagtttgttccttc
agatgttcagatgtgtccagagtttcttccttccggtgggttcgtggtctcgctgacttc
aggagtgaagccacagaccttcgcagtcaacagatgtttgcaactccagtccccatgatc
tgcgttgaggtcccagtggggatccatactggggacagcttgctgaccggtagggaattt
gtccctttcttcgactgtcattctatcatttacttgactaacataccaggtatctccaaa
ctctcaggctgcagggtcaaccaacaacttgtcaggaccctggagctgaatggctttcct
ctctgccgaccctcggctcagcccagaagtacaggaaaagcggaagctgattccaagcaa
accaatgctcccaattccgaagagtcggggttgttagagcaccctttcccagaaagcctg
acacccgtgtctttagtccagcagctgtgctactcatatttaactggccatcaggttcgt
ggtcttgctgacttcaggagtgaagccgcagaccttcacagtgagctcttaaagctggtg
cgtccagagttgtttgttcctcccggtgggttcgtggtctcactgacttcaggagtgaag
ccgcagaccttcgcagtgagtgttacagctgttaaagaaatacaagctaccatcagagaa
tactataaacacctctccacaaacaaactagaaaatctagaggaaatggataaattcctg
gacaaatacaccttcccaagattaagccaggaagaagttgaatccctgaatagaccaata
acaagttctgaaattgaagcagtaatagcccaccaaccaaaaaaagcccaggaccagatg
gattcacagccaaattctaccacagatgcagaaaaggcctttgacaaaattcaacaaccc
ttcatgctaaaaactctcaataaattaggtattgatgggacgtatctcaaaataataaga
gctatttatgacaaacccacagccaatatcatactgaatgggcaaaaactggaagcattc
cctttgaaaactggaacaagacagggatgccctctctcaccactcctattcaacatagtg
ttggaagttctggccagggcaattaggcaggagaaggaaataaagggtattcaatcagga
aaagaggaagtcaaattgtccctgtttgcagatgacatgattgtatatctagaaaacccc
attgtctcagcccaaaatctcgttaagctgataagcaacttcagcaaagtctcaggatac
aaaatcaatgtacaaaaatcacaagcattcttatacaccaataacagacaaacagagagc
caaatcatgagtgaactcccattcacaattgcttcaaagagaataaaatacttaggaatc
caccttacaagggacgtgaagcacctcctcaaggagaactacaaaccactgctcaataaa
ataaaagaggatacaaacaaatggaagaacattccatgctcatgggtaggaagaatcaat
atcatgaaaatggccatactgcccaaggtaatttatagattcaatgccatccccatcaag
ctaccaatgactttcttcacagaactggaaaaagctactttaaagttcatatggaaccaa
aaaagagcccacatcgccaagtcaatcctaagccaaaagaacaaagctggaggcatcaca
ctacctgacttcaaagtatactacaaggctacagtaaccaaaacagcatggtactggtac
caaacagagatatag