GENSCAN 1.0	Date run:  7-Nov-116	Time: 15:50:32

Sequence gi568815578r:49407923_49668116 : 260194 bp : 47.24% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  16697  16767   71  2  2   56  113    31 0.094   1.23
 1.02 Intr +  19078  19309  232  2  1   94   64    71 0.321   2.13
 1.03 Intr +  19951  20151  201  1  0   64   78   135 0.718   8.50
 1.04 Intr +  36304  36462  159  1  0  108   74    53 0.461   5.00
 1.05 Intr +  37497  37688  192  0  0   52   45   102 0.266   0.91
 1.06 Intr +  41181  41340  160  0  1   51  110    55 0.404   3.99
 1.07 Intr +  42536  42728  193  1  1   72   15    81 0.024  -1.73
 1.08 Intr +  47326  47400   75  2  0   85   94    42 0.063   3.99
 1.09 Intr +  53112  53275  164  1  2   62   36    86 0.066   0.49
 1.10 Term +  55297  55347   51  0  0  148   49     6 0.092   0.13
 1.11 PlyA +  55673  55678    6                               1.05

 2.06 PlyA -  58655  58650    6                               1.05
 2.05 Term -  60708  60550  159  0  0   85   42   107 0.546   3.74
 2.04 Intr -  74584  73992  593  2  2   -2  113  1089 0.001  94.72
 2.03 Intr -  76408  76020  389  0  2   85   84   131 0.004   6.83
 2.02 Intr -  93937  93772  166  2  1   94  100    49 0.522   5.72
 2.01 Init -  95987  95903   85  2  1   89   77    54 0.909   5.42
 2.00 Prom -  97585  97546   40                              -6.16

 3.11 PlyA -  98452  98447    6                               1.05
 3.10 Term - 100142  99998  145  1  1  106   47   344 0.999  29.48
 3.09 Intr - 103257 103106  152  0  2   71   79   113 0.999   7.66
 3.08 Intr - 105339 105158  182  1  2   89   84   163 0.999  15.59
 3.07 Intr - 106473 106305  169  0  1  105   77   107 0.899  10.82
 3.06 Intr - 116317 116136  182  2  2  123   94   141 0.953  17.79
 3.05 Intr - 131799 131648  152  2  2  117   94   222 0.986  25.51
 3.04 Intr - 136526 136383  144  1  0   93   94   101 0.722  10.60
 3.03 Intr - 140097 139919  179  0  2   92   74   196 0.996  17.32
 3.02 Intr - 142267 142144  124  0  1   53   93   119 0.855   9.49
 3.01 Init - 160194 160121   74  0  2   98  101   238 0.991  24.64
 3.00 Prom - 167582 167543   40                              -4.96

 4.15 PlyA - 170967 170962    6                               1.05
 4.14 Term - 180958 180854  105  1  0   90   45    59 0.117   0.21
 4.13 Intr - 195486 195347  140  1  2   43   58    74 0.073   0.08
 4.12 Intr - 199692 199554  139  0  1  107   70    97 0.966   9.84
 4.11 Intr - 203399 203290  110  0  2   45   73    63 0.015   0.50
 4.10 Intr - 206784 206725   60  1  0   73   90    54 0.030   2.81
 4.09 Intr - 213071 212954  118  2  1   59   42    81 0.039   0.64
 4.08 Intr - 228537 228405  133  2  1  115   66   172 0.226  18.35
 4.07 Intr - 229520 229419  102  1  0   70   81    89 0.975   5.69
 4.06 Intr - 231878 231756  123  1  0   87   82    83 0.980   7.30
 4.05 Intr - 232743 232556  188  0  2   59   65    27 0.921  -4.01
 4.04 Intr - 234662 234546  117  2  0   95   89   107 0.999  12.16
 4.03 Intr - 235728 235604  125  1  2   95   97    50 0.928   6.90
 4.02 Intr - 239156 239043  114  0  0  109   61    25 0.763   2.32
 4.01 Intr - 248780 248646  135  0  0  107   76   188 0.980  20.04

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init - 203387 203290   98  2  2   74   73   149 0.891   9.78


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578r:49407923_49668116|GENSCAN_predicted_peptide_1|499_aa
XCCLSLHPAAGAEQPIWDDRDIFNGNGSRYGHVVHDHSGWLRDGHMMQSRPMHVNHRALR
NYWYPLELLGWLDTSLGLLRAIFAMTWGAACEDANTKEKRSRLLPTSLFFVRNTHSRGAL
FSAVAQQSGLDHQAGFRYGKEPADVMESCQLGQELRGDDVIIKFQKTWRHEDDPLWPQLQ
QNMQGLEDTLQSSPVPGAPKVSWFCPWSPSRRGDEGEQEPARAVEFLTGGGGGRLLMLTR
EPVLPPVAGCPRPGPCSGNLPQCLSNTGVKSLKWFPKVLSRIAGPGSGQSERCIPLATTI
GRVWACDPNQANQSEPWDLSWDYRKEKLQHSNGAPPSAQTRAPACMLLASNYQPARRMKH
GSLMLLRGANRCWQKSIPVDKSVDTCTLIRAHLAPKYRNESVSRSLWLSGKRVSVDAGEQ
RESNCNSPVGTNSTLVVTAVTNKLLHFPTFCCQPISRAGKPQALGTFFCPLPDSVCLSLD
DGAVGASEARNAPPTFPAT

>gi568815578r:49407923_49668116|GENSCAN_predicted_CDS_1|1500_bp
nnatgctgcctgtccctacatccggctgctggggctgagcagccaatttgggacgaccgt
gatatatttaacggaaatggctccaggtatgggcatgtggttcatgaccacagtggttgg
ctcagagatggccatatgatgcaatccaggccaatgcatgtcaaccacagagctcttagg
aactactggtacccactggagctgctgggctggttagatacaagcctggggctgctgaga
gccatttttgctatgacttggggagctgcctgcgaggatgccaacacaaaggaaaaaagg
tccaggctgctgcctacatctttgttcttcgtgaggaacacacactcccggggggccctt
ttctcagctgtggcccagcagtcgggtctggaccaccaggctgggttccgttatgggaaa
gaaccagcagatgtaatggaatcatgccaattaggccaggagctgcgtggggatgatgtt
atcattaagttccagaagacgtggagacatgaggatgaccctctctggccccagctgcag
cagaacatgcaaggattggaggacactctccaatcttcccctgtcccaggggctcctaaa
gtgtcctggttttgcccttggagcccaagtagaagaggggacgagggggagcaggagcca
gccagggctgtggagttcctgacaggtggaggtggtggacgtctgctgatgttgaccagg
gagcccgtgctcccaccggtggctggctgccccagacctggcccctgttctgggaatctg
ccccagtgtctgagcaacacaggggtgaagagtttgaaatggttccccaaggtgctttcc
aggattgcagggcctgggtctggccaatcagaacggtgcattcccctggcaacaacgatt
ggcagagtctgggcatgtgaccccaatcaagccaatcagagtgaaccctgggacttgtca
tgggactaccggaaagagaagctccagcattctaatggagctccgccttcagcacagacc
agggcccctgcatgcatgctgttagcatctaactaccagccagcacggcgcatgaagcac
ggttcattaatgctcttgaggggagcaaacaggtgctggcagaaatctattcccgtggac
aaatctgtggacacgtgcaccctcatacgtgcccacttagcccccaagtataggaatgag
tcagtgtcacgatccctctggctttcagggaagcgtgtgagtgtggatgcaggtgagcag
cgagaaagtaactgtaatagtccagttggcaccaacagtacacttgtggtgaccgcagtg
accaacaaactgttgcacttccccacgttctgctgccagcccatctcccgggctggaaag
ccgcaagcccttggcactttcttctgccccttgcctgacagtgtttgcctttctttggat
gatggagcagtgggggcctcagaggcaagaaatgcacccccaacatttccagccacgtga

>gi568815578r:49407923_49668116|GENSCAN_predicted_peptide_2|463_aa
MLKSIKPSLFVELPLSVILMEGIGRAWNGPSDLQLQDFGLSYPCTIKVNRKTQCFILPGK
DIKKYIYSYCQLMKGYFNTPKAERWRRPALVPGSGRSEVRDRIAASAEPKLSPDLLISPR
QPPPPPPREQEEEEVEEVPRGRGPAPAPPAPAGAPRLGERAPAPRRLQPGRVACPAGVGP
AQPGPGTAAAHGRGRPGGRDDARSLAPGGGRPGGGAGAAGSAMPAGMTKHGSRSTSSLPP
EPMEIVRSKACSRRVRLNVGGLAHEVLWRTLDRLPRTRLGKLRDCNTHDSLLEVCDDYSL
DDNEYFFDRHPGAFTSILNFYRTGRLHMMEEMCALSFSQELDYWGIDEIYLESCCQARYH
QKKEQMNEELKREAETLREREGEEFDNTCCAEKRKKLWDLLEKPNSSVAAKAALTAPSSV
HRKPDVHTFLAQNIVKIHLWVVLWMPGLAYRETGKLKRAGCAA

>gi568815578r:49407923_49668116|GENSCAN_predicted_CDS_2|1392_bp
atgctgaaatctattaaaccatctttgtttgtggaactgcctctgagtgtgattctgatg
gagggcattggccgtgcctggaatggtcctagtgatctgcagctccaagactttggcctt
tcatacccttgtaccattaaagtcaacagaaagacccagtgttttattttgccaggtaag
gacattaagaaatacatttactcctactgtcagcttatgaaaggatattttaatacccct
aaagcagaaaggtggcgccgtcctgccttggtgcccggctccgggcgctccgaagtgcgg
gacagaatagcagcgagcgcggagccgaagctcagccccgacttgttgatctcgcccagg
cagccgccgccgccgccgccgcgggagcaggaggaggaggaggtggaggaggtgccgcgc
ggccgcggtcctgcccccgcgcccccggcgcccgccggcgccccccgcctcggagagcgc
gccccggccccgcggcgcctgcagcccgggcgagttgcctgcccggccggggtaggcccg
gctcagcccggccccgggaccgccgctgcccacgggcgggggcgcccgggcggccgggac
gatgcgcggtccctggccccaggaggcggccgccctggggggggggcgggggcggccgga
tcagcgatgccggcgggcatgacgaagcatggctcccgctccaccagctcgctgccgccc
gagcccatggagatcgtgcgcagcaaggcgtgctctcggcgggtccgcctcaacgtcggg
gggctggcgcacgaggtactctggcgtaccctggaccgcctgccccgcacgcggctgggc
aagctccgcgactgcaacacgcacgactcgctgctcgaggtgtgcgatgactacagcctc
gacgacaacgagtacttctttgaccgccacccgggcgccttcacctccatcctcaacttc
taccgcactgggcgactgcacatgatggaggagatgtgcgcgctcagcttcagccaagag
ctcgactactggggcatcgacgagatctacctggagtcctgctgccaggcccgctaccac
cagaagaaagagcagatgaacgaggagctcaagcgtgaggccgagaccctacgggagcgg
gaaggcgaggagttcgataacacgtgctgcgcagagaagaggaaaaaactctgggaccta
ctggagaagcccaattcctctgtggctgccaaggcagcactgactgctccctcctctgtg
caccggaaacctgacgttcataccttcctcgcacaaaacatcgtgaaaattcacttgtgg
gttgttctgtggatgccaggcctggcctacagagaaacaggaaagcttaagcgtgcaggc
tgtgcagcctga

>gi568815578r:49407923_49668116|GENSCAN_predicted_peptide_3|500_aa
MAWAALLGLLAALLLLLLLSRRRTRRPGEPPLDLGSIPWLGYALDFGKDAASFLTRMKEK
HGDIFTILVGGRYVTVLLDPHSYDAVVWEPRTRLDFHAYAIFLMERIFDVQLPHYSPSDE
KARMKLTLLHRELQALTEAMYTNLHAVLLGDATEAGSGWHEMGLLDFSYSFLLRAGYLTL
YGIEALPRTHESQAQDRVHSADVFHTFRQLDRLLPKLARGSLSVGDKDHMCSVKSRLWKL
LSPARLARRAHRSKWLESYLLHLEEMGVSEEMQARALVLQLWATQGNMGPAAFWLLLFLL
KNPEALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRLTAAPFITRE
VVVDLAMPMADGREFNLRRGDRLLLFPFLSPQRDPEIYTDPEVFKYNRFLNPDGSEKKDF
YKDGKRLKNYNMPWGAGHNHCLGRSYAVNSIKQFVFLVLVHLDLELINADVEIPEFDLSR
YGFGLMQPEHDVPVRYRIRP

>gi568815578r:49407923_49668116|GENSCAN_predicted_CDS_3|1503_bp
atggcttgggccgcgctcctcggcctcctggccgcactgttgctgctgctgctactgagc
cgccgccgcacgcggcgacctggtgagcctcccctggacctgggcagcatcccctggttg
gggtatgccttggactttggaaaagatgctgccagcttcctcacgaggatgaaggagaag
cacggtgacatctttactatactggttgggggcaggtatgtcaccgttctcctggaccca
cactcctacgacgcggtggtgtgggagcctcgcaccaggctcgacttccatgcctatgcc
atcttcctcatggagaggatttttgatgtgcagcttccacattacagccccagtgatgaa
aaggccaggatgaaactgactcttctccacagagagctccaggcactcacagaagccatg
tataccaacctccatgcagtgctgttgggcgatgctacagaagcaggcagtggctggcac
gagatgggtctcctcgacttctcctacagcttcctgctcagagccggctacctgactctt
tacggaattgaggcgctgccacgcacccatgaaagccaggcccaggaccgcgtccactca
gctgatgtcttccacacctttcgccagctcgaccggctgctccccaaactggcccgtggc
tccctgtcagtgggggacaaggaccacatgtgcagtgtcaaaagtcgcctgtggaagctg
ctatccccagccaggctggccaggcgggcccaccggagcaaatggctggagagttacctg
ctgcacctggaggagatgggtgtgtcagaggagatgcaggcacgggccctggtgctgcag
ctgtgggccacacaggggaatatgggtcccgctgccttctggctcctgctcttccttctc
aagaatcctgaagccctggctgctgtccgcggagagctcgagagtatcctttggcaagcg
gagcagcctgtctcgcagacgaccactctcccacagaaggttctagacagcacacctgtg
cttgatagcgtgctgagtgagagcctcaggcttacagctgcccccttcatcacccgcgag
gttgtggtggacctggccatgcccatggcagacgggcgagaattcaacctgcgacgtggt
gaccgcctcctcctcttccccttcctgagcccccagagagacccagaaatctacacagac
ccagaggtatttaaatacaaccgattcctgaaccctgacggatcagagaagaaagacttt
tacaaggatgggaaacggctgaagaattacaacatgccctggggggcggggcacaatcac
tgcctggggaggagttatgcggtcaacagcatcaaacaatttgtgttccttgtgctggtg
cacttggacttggagctgatcaacgcagatgtggagatccctgagtttgacctcagcagg
tacggcttcggtctgatgcagccggaacacgacgtgcccgtccgctaccgcatccgccca
tga

>gi568815578r:49407923_49668116|GENSCAN_predicted_peptide_4|569_aa
XNTYLFMMQAQGILIRDNVRTIGAQVYEQVLRSAYAKRNSSVNDSDYPLDLNHSETFLQT
TTFLPEDFTYFANHTCPERLPSMKGPIDINMSEIGMDYIHELFSKDPTIKLGGHWKPSDC
MPRWKVAILIPFRNRHEHLPVLFRHLLPMLQRQRLQFAFYVVEQVGTQPFNRAMLFNVGF
QEAMKDLDWDCLIFHDVDHIPESDRNYYGCGQMPRHFATKLDKYMYLLPYTEFFGGVSGL
TVEQFRKINGFPNAFWGWGGEDDDLWNRVQNAGYSVSRPEGDTGKYKSIPHHHRGEVQFL
GRYALLRKSKERQGLDGLNNLNYFANITYDALYKNITVNLTPELAQGTQSKTLIDQKSGT
SRTHHSVASPFSTDDDSGKVPEPLAGPEVGAGDEAVEYPSYINSQGSPRDDPVPARPGCG
SGAPWRLHGALQQSPKSLAMGKVKHHDSEKASDLPKITGPTESQPECKPGPSDLEYALFT
MAPGTKTPVLEAGSPSSRCRLSGLISVKASLFGLQMATLLLPLHTVIPLCMCAPEEVTHL
TSLEFALLHLIPMVLNQGSFASQDTFSNV

>gi568815578r:49407923_49668116|GENSCAN_predicted_CDS_4|1710_bp
ntgaacacctacctcttcatgatgcaagcccaaggcattctgatccgggacaacgtgaga
acaatcggtgctcaggtttatgagcaggtgcttcggagtgcttatgccaagaggaacagc
agtgtaaatgactcagattatcctcttgacttgaaccacagtgaaaccttcctgcaaact
acaacatttcttcctgaagacttcacctactttgcaaaccatacctgccctgaaagactc
ccttccatgaagggcccaatagacataaacatgagtgaaattggaatggattacattcat
gaactcttctccaaagacccaaccatcaagctcggaggtcactggaagccttctgattgc
atgcctcggtggaaggtggcgatccttatccccttccggaaccgccacgagcacctccca
gtcctgttcagacacctgcttcccatgctccagcgccagcgcttgcagtttgcattttat
gtggttgaacaagttggtacccaaccctttaatcgagccatgcttttcaacgttggcttt
caagaggcaatgaaagacttggattgggactgtttgatttttcatgatgtagatcacata
ccggaaagtgatcgcaactattatggatgtggacagatgccgaggcattttgcaaccaaa
ttggataagtatatgtatctgcttccttataccgagttctttggcggagtgagtggctta
acagtggaacaatttcggaaaatcaatggctttcctaatgctttctggggttggggtgga
gaagatgacgacctctggaacagagtacagaatgcaggctattctgtgagccggccagag
ggtgacacaggaaagtacaagtccattcctcatcaccatcgaggagaagtccagtttctt
ggaaggtatgctctgctgaggaagtcaaaagaacggcaagggctggatggcctcaacaac
ctgaactactttgcaaacatcacatacgacgccttgtataaaaacataactgtcaacctg
acacccgagctggctcagggaacccaatcaaagacgctgatcgatcagaagagcggtaca
agtagaacacaccactcagtggcaagtcctttctccacagatgatgactcagggaaggtc
ccagagcctctggcaggccccgaggtaggtgctggggatgaagctgtggagtatcctagt
tatatcaactctcagggtagcccgcgggatgacccggtccccgcgcgtcctgggtgcggc
tcgggcgctccctggcggctgcacggggcattgcagcagtccccgaagagcctggcgatg
ggaaaggtaaagcaccatgactcagagaaggcaagtgacttgcctaaaatcacagggccc
acagagtcacagccagaatgcaagcctgggccctcagatctggagtatgccctcttcacc
atggctccaggcaccaaaactccagtgctggaggctggaagtccaagctcgagatgccgg
ctgtcagggttgatttccgtcaaggcctctctctttggcctgcagatggcgaccctcttg
ctgcctctgcacacggtcatccctctgtgcatgtgcgctcctgaggaagtaactcatctt
acctctttggaatttgctcttctacatcttatccccatggttctcaaccagggcagcttt
gcctctcaggacacatttagcaatgtctga