GENSCAN 1.0	Date run:  7-Nov-116	Time: 17:12:29

Sequence gi568815592f:20302233_20590427 : 288195 bp : 41.90% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3087   3093    7  2  1   97   98     0 0.010   2.90
 1.02 Intr +  15722  15775   54  0  0   83   82    31 0.130   0.03
 1.03 Intr +  16133  16310  178  0  1   31   64   177 0.033   7.66
 1.04 Intr +  16889  17029  141  2  0   47   15   135 0.140   0.65
 1.05 Term +  27030  27267  238  0  1   81   43   171 0.113   6.56
 1.06 PlyA +  27647  27652    6                               1.05

 2.10 PlyA -  27694  27689    6                               1.05
 2.09 Term -  29293  29145  149  2  2   61   41   191 0.899   8.78
 2.08 Intr -  38698  38554  145  1  1   91   82    60 0.645   4.63
 2.07 Intr -  41682  41648   35  1  2   92   80    27 0.522  -0.68
 2.06 Intr -  45400  45191  210  2  0   54   88   136 0.251   8.16
 2.05 Intr -  54520  54472   49  1  1   83   75    53 0.201   0.83
 2.04 Intr -  54840  54631  210  0  0   62  107    26 0.064   0.09
 2.03 Intr -  58652  58490  163  1  1   36   47   148 0.090   4.56
 2.02 Intr -  59295  59186  110  0  2   44   99    29 0.308  -2.24
 2.01 Init -  68727  68677   51  0  0   38   84    86 0.314   4.41
 2.00 Prom -  69700  69661   40                              -5.45

 3.03 PlyA -  72186  72181    6                               1.05
 3.02 Term -  75581  75368  214  1  1   69   29   223 0.694  10.22
 3.01 Init -  80195  80173   23  2  2   46  113    10 0.710  -1.49
 3.00 Prom -  81035  80996   40                              -0.95

 4.00 Prom +  81438  81477   40                              -3.65
 4.01 Init +  91338  91429   92  2  2   49  100   145 0.682  11.81
 4.02 Intr +  92778  92974  197  0  2  -33   92   128 0.238  -0.76
 4.03 Term +  97650  97744   95  1  2   75   33    90 0.278  -0.79
 4.04 PlyA +  98058  98063    6                               1.05

 5.05 PlyA -  99159  99154    6                               1.05
 5.04 Term - 100466 100115  352  1  1   45   43   374 0.521  21.57
 5.03 Intr - 100966 100689  278  1  2  109   37   123 0.686   4.69
 5.02 Intr - 101662 101483  180  1  0   72   56   158 0.746  10.14
 5.01 Init - 104570 104463  108  2  0   73   59    70 0.571   2.87
 5.00 Prom - 104754 104715   40                              -8.25

 6.03 PlyA - 105339 105334    6                               1.05
 6.02 Term - 108057 107663  395  1  2  104   41   204 0.970  11.51
 6.01 Init - 109488 109305  184  0  1   66   36   127 0.545   4.63
 6.00 Prom - 115604 115565   40                              -4.75

 7.07 PlyA - 116123 116118    6                               1.05
 7.06 Term - 118523 118439   85  1  1   80   43   124 0.733   3.25
 7.05 Intr - 126421 126332   90  0  0   35  107    76 0.293   2.39
 7.04 Intr - 129268 129140  129  0  0   86   59    85 0.115   4.29
 7.03 Intr - 140886 140847   40  1  1   82   72    37 0.006  -2.14
 7.02 Intr - 148472 148278  195  0  0   16  103   118 0.601   4.56
 7.01 Init - 153373 153262  112  1  1   67   81    99 0.311   7.52
 7.00 Prom - 154583 154544   40                              -8.05

 8.00 Prom + 156874 156913   40                              -7.05
 8.01 Init + 162026 162160  135  1  0   40   96    64 0.081   2.59
 8.02 Intr + 177614 177725  112  1  1   66   78   129 0.874   8.73
 8.03 Intr + 178974 179193  220  1  1   82   76   139 0.730   8.54
 8.04 Intr + 180530 180717  188  2  2   38   32   161 0.510   3.91
 8.05 Intr + 184480 184571   92  2  2   25   94    95 0.166   2.59
 8.06 Intr + 185881 186016  136  0  1   80   93    36 0.987   2.52
 8.07 Term + 188011 188198  188  2  2   78   38   170 0.686   7.67
 8.08 PlyA + 188368 188373    6                               1.05

 9.04 PlyA - 189017 189012    6                              -0.45
 9.03 Term - 189349 189126  224  2  2   76   44   138 0.806   4.30
 9.02 Intr - 189778 189677  102  2  0   87   62    99 0.447   6.43
 9.01 Init - 224517 224325  193  0  1   82   91    64 0.243   5.28
 9.00 Prom - 229031 228992   40                              -6.15

10.03 PlyA - 230887 230882    6                               1.05
10.02 Term - 232435 232174  262  0  1   33   48   263 0.862  10.81
10.01 Init - 240555 240437  119  0  2   92   38    89 0.223   4.02
10.00 Prom - 240787 240748   40                              -7.05

11.00 Prom + 241914 241953   40                              -9.15
11.01 Init + 244119 244291  173  2  2   56  115   230 0.934  21.46
11.02 Intr + 274814 274925  112  2  1   89   87    98 0.218   9.26
11.03 Term + 283218 283289   72  2  0   75   48    78 0.073  -0.57
11.04 PlyA + 285099 285104    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -   6626   6569   58  2  1   43   45    98 0.857   2.52
S.002 Init + 209882 209939   58  1  1   73  107    47 0.829   6.62
S.003 Intr + 246361 246473  113  1  2   74   95    61 0.920   4.50


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592f:20302233_20590427|GENSCAN_predicted_peptide_1|205_aa
MQGISPNAIPPRSPHPTTSPAPDQEGQMGAEIQLALEYSGMWLPPKTETETYLRRICLRR
GLLLVCTMGRCVVPVTLALRAWDVQPAMSEPPLPSPDGLLRGLRLPYERRSLLHGAPSTI
DRPRAEKTMIAGKVQGKEIGDQWENTSGGASGMSSQLLRPPPPFPLPLAPLLLLGDSSQA
IEVSVITRVFDDVFLPSYTIIFLKA

>gi568815592f:20302233_20590427|GENSCAN_predicted_CDS_1|618_bp
atgcaaggtatatctcctaatgctatccctccccgctccccccaccccacaacaagcccc
gcacctgaccaagagggacaaatgggagctgaaatccagcttgcactcgaatattctggc
atgtggctgccaccaaaaacagagacagaaacatacttgcgacgcatctgcctgcggaga
ggacttcttctggtttgcacaatgggtcggtgtgtggtacctgtaaccctggcactgagg
gcttgggacgtgcagcccgccatgtctgagcctcccctaccctctcctgacgggctcctg
cgcggcctgaggctcccctacgagcgccgctccctgctccatggggcgcccagtaccatc
gaccgcccaagagctgagaagacaatgatagcaggcaaggtgcaaggaaaggaaataggt
gatcaatgggaaaatacgtcaggaggtgcttcaggaatgtcatctcagttactcagacca
ccgccaccttttcctctcccactggcaccactgctccttcttggggactcctcacaggct
atagaagtttcagtcattacccgtgtatttgatgatgtgtttctcccaagctatactatc
attttcttgaaagcatag

>gi568815592f:20302233_20590427|GENSCAN_predicted_peptide_2|373_aa
MEHLLNAKRYAGYEATELLQEYYPLSHLPLSQCLLNNYYVLRDVSGAVEPKQMRYRGQLP
DLAGVLVDLAQAIQCDLGLAVLGDLHNQMSKDSTDPSLAGMTSSSPFKFSLWVGLQTAQL
AGDPITLSIERELILPLEFQIYNYDICLMAENDNFAEHSAYPTLRSVYGDQWGKSWVLRD
ILKSSGQPERLDVKGNNDKKKDSVHVPYKHNPSSSNYIFHPRLVESVDVEPLDTECQLYL
VIQQGSRQGSNKDDMKDRCQGTGQDELTLLRPAKYQFHDFPSGSFNFILSQTHFMTQFWI
CSRRLDMTLSLYFHSAFATVAIALEKLLGRLKEQIRGGYASRAAFQNHTTGLAASGPHSH
DASAPIRKLLVLE

>gi568815592f:20302233_20590427|GENSCAN_predicted_CDS_2|1122_bp
atggagcacctactgaatgccaagcgctatgctggatatgaggccacagagttactccag
gagtattatcccctttctcatctcccattaagtcaatgtttgctgaacaattactatgtg
ctaagagatgtgtcaggtgctgtggagccaaagcaaatgagatacaggggacaacttcca
gacctggcaggagttctagtggacctggctcaggctatccagtgtgatttaggattagcg
gttctgggtgacctgcacaaccaaatgagcaaagatagcactgaccctagtctagctgga
atgacaagcagcagtcccttcaagttttcgctctgggtggggctgcaaacagctcagcta
gctggagacccaatcaccttgtctatagaaagagaattaattctgcctctggaattccaa
atctataattatgacatatgcctgatggctgaaaatgacaactttgcagaacattctgct
taccccactttgagaagtgtctatggggaccaatgggggaagtcctgggttctgagagac
atcctgaagtcttctggacagccagagagattagatgtaaaagggaataatgacaagaaa
aaagattctgtacatgttccgtacaaacacaacccttctagttctaattacattttccat
ccgaggttggtggaatccgtggatgtggaacccttagatacggagtgccaattgtacctg
gtaattcagcagggaagccgacaggggagcaataaggatgacatgaaggacagatgccaa
ggtacaggacaagatgagctgactcttttgcgaccagccaaatatcagtttcatgatttc
ccatcaggctcttttaactttattctcagtcaaactcattttatgacccagttttggatt
tgctctcgaagactcgacatgactctcagtctgtattttcattcagccttcgccacagta
gccattgccctagagaaattgttgggaagattgaaagagcagattcgaggaggctatgct
tcaagagcagctttccagaaccacaccacaggactggctgcttctgggccccacagccac
gatgcctctgcaccaatcaggaagctgctggttttagaataa

>gi568815592f:20302233_20590427|GENSCAN_predicted_peptide_3|78_aa
MTPEKGRRLCEFTAHITAEAGPQAKFKVKVGCRTVVPVKMNSPFATYILFGGITIFDSSE
LSAAFQIRPFTCTDKSKS

>gi568815592f:20302233_20590427|GENSCAN_predicted_CDS_3|237_bp
atgacacctgagaaaggtagaaggctgtgtgagttcacagctcacattacagcagaagca
ggaccacaagccaaatttaaagtaaaagtgggctgcaggacagttgtacctgtaaaaatg
aattctccttttgctacctacattctttttggtggcatcaccatctttgacagctcggaa
ctgtctgcagcctttcagatacggccctttacctgcactgacaaaagtaaatcttag

>gi568815592f:20302233_20590427|GENSCAN_predicted_peptide_4|127_aa
MVQGECIKQEEEKEEDIKGIIEENEAINEIHTSEWGRATKCHKSCVASAVREKGNQVVLV
GPENRRTPKQPIELHWDVSELTQGQPLKLRRVLSSGGISIEESNIDGTRAGKLLVYYTSS
SCPLSTT

>gi568815592f:20302233_20590427|GENSCAN_predicted_CDS_4|384_bp
atggtccaaggagaatgtataaaacaggaagaagagaaggaagaagatattaagggaata
atagaagaaaacgaagccatcaatgagatccatacaagtgagtggggacgagctaccaag
tgccataagagctgtgtggcatcagcagtgagggagaaggggaaccaggtagtgttggtg
ggacccgagaataggagaacccccaaacagccaatagagcttcactgggatgtcagtgag
ctgacacagggacagcctctaaaactgagaagggtcctgtcctccggaggtatatccata
gaggaaagcaacattgatggaacaagagcagggaagctgctggtatattacacttctagc
tcatgccctttgagtaccacttaa

>gi568815592f:20302233_20590427|GENSCAN_predicted_peptide_5|305_aa
MVKIESSGLTKAAKHKLHPKVGRSVESWTEWNSGKKPPTESGAPAASAAPEPSRSLTCCC
KGISETSLAPGGGGGPAGEGARRAEQTGGAGRGRAPPLCCRELQILKCVKRSPADPLRSE
HAAGTPGRQRASKADWGLAPQQSPGFNPSEPPTPQFTTPSPTPFSIRGVTPSYARERGSF
ELEGKGEWGAPTTPRGASPPPAGAGDGGEGGYYRRAAAAAAAAASQRWWLLQQPGSAGGS
VRRGVEEAAGGLLRAGGTGEEGAGGYGAALEGGGTGGGGSVRGEDLDVRARGGGSGGGGG
EAGAG

>gi568815592f:20302233_20590427|GENSCAN_predicted_CDS_5|918_bp
atggtgaagattgagagttcaggtctaacaaaagccgctaagcataaactgcacccaaaa
gttggcaggtctgtggaatcatggacggagtggaactcaggcaaaaaacccccaacagaa
tccggtgcccccgcggcgtcggcggcccccgagccgtcccggtcactaacctgctgctgt
aagggcatttccgaaaccagcctggctccggggggaggtggggggccggctggagagggg
gcccggagggccgaacagaccggcggcgcagggcgagggcgggcgccgcccctttgttgc
cgggagttacagatcctaaaatgtgtcaagcgcagccccgccgatcccctgcgctccgag
cacgccgcagggacccccggccgccaacgagcctccaaggccgactgggggctagcaccc
caacagtcccccggtttcaacccctcagagccccccacaccccagttcactactccctcc
cccacccccttctccatccggggcgtgaccccttcctacgcccgagaaagaggaagcttc
gagttggaggggaagggagagtggggcgcgcccacgaccccgcgcggtgcgagcccacct
cccgccggggctggggacggtggggagggagggtattaccggagggccgccgccgccgcc
gctgccgccgcgtcccagcgctggtggctgctgcagcagcccggctctgctggagggtcc
gtgcggcgtggtgtagaggaggctgccggcggtctgctccgcgccgggggcactggggag
gagggggccggcggctacggcgccgctttggagggaggaggaacaggaggtggtggaagt
gttcgtggtgaggatctggatgtacgcgcccggggcggcggcagcggcggcggcggcggc
gaagccggggctggctag

>gi568815592f:20302233_20590427|GENSCAN_predicted_peptide_6|192_aa
MGQWEEGNKRSKVEREKLRANTPEGNLRCLQHHTVAAAECRGMGSKTEKARFHHPLMAGK
GGQGAGYKHMSLLLSKGLPDAERHTGDSVGLRDAALVMYQKWSPQSIRNGEEQSGTKYTD
PEFTAHHSQSPELPPFRIIKTRAGRSSPQQKVKRHSNPPLSKTNSTRQKTFQRKSASLIT
TLISWYLMLTGC

>gi568815592f:20302233_20590427|GENSCAN_predicted_CDS_6|579_bp
atgggccagtgggaggagggcaacaaaaggagtaaggtggagagggagaagctacgagca
aacacaccagagggaaatctgcggtgcctgcagcaccacactgtcgcagcagccgagtgc
agaggaatgggaagcaagaccgaaaaggcaagatttcaccatcccttgatggcaggaaaa
ggtggacagggtgcaggttataaacacatgagcctccttctctccaagggactgccagat
gcagaaaggcacacaggagatagtgtgggcctcagggatgctgctctggttatgtatcag
aaatggagcccccaaagcatcagaaatggggaagagcagagtggaacgaaatatacagac
cctgagttcactgcccatcattctcagagtccagagctaccacccttcaggatcataaaa
actagagcaggcagaagctctcctcagcagaaagtcaagaggcattcaaatcctccactc
tctaagacaaactctactcgccaaaaaactttccagaggaaatcagcttcactgattact
actctcatcagttggtacttaatgctcactggctgttag

>gi568815592f:20302233_20590427|GENSCAN_predicted_peptide_7|216_aa
MTRYRENCTAVSINKTIGFYDESSSSAVDKAISDGPKGTGKDFMTKTPKAIGTKAKIDKW
DLIKLKSFCTAKETLNRVNRQHIEWEKIFANYASDKGLISSIAILEQTQLSVLTDRLQYV
QSAPRETKKQKAVLLAPEAGHRQQKANLSSRDTGPWDASTYQRANLSDPVYIPNIGSHSA
APFPVNPESNSLQCEGKTLHQQKDDSLKAQGIVGIL

>gi568815592f:20302233_20590427|GENSCAN_predicted_CDS_7|651_bp
atgactcgctacagggaaaattgtacagcagtgtcaataaataaaaccataggcttctat
gatgaatcgtcaagttctgctgtggacaaggcaatatctgatgggccaaaaggaacgggc
aaagatttcatgacgaagacaccaaaagcaattggaacaaaagcaaaaattgacaaatgg
gatctaattaaactaaagagcttctgcacagcaaaagaaactctcaacagagtaaacaga
caacatatagaatgggagaaaatttttgcaaactatgcatctgacaaaggtctaatatcc
agcatcgcaattcttgagcagacccagctttctgtgttgacagacaggttgcaatatgtt
cagtctgctcctagagagacaaaaaagcaaaaagcagtgctcctggcacctgaggcagga
caccgtcagcagaaggcaaatctcagctcacgggacactgggccatgggatgcgagcacg
tatcagagggctaacctttctgaccctgtctacattcccaacattggttctcattcagcc
gctcccttcccagtcaaccctgagagcaacagtcttcagtgtgaaggcaaaaccctccac
cagcaaaaagatgactcgctgaaggctcaggggattgttggcattttgtag

>gi568815592f:20302233_20590427|GENSCAN_predicted_peptide_8|356_aa
MHHKHSSSLSVNQRAVYQTLKNPAAPHTVPESGLRGRLSPPCIPQAKRRLELGESGHQYL
SDGLKTPKGKGRAALRSPDSPKTPKSPSEKTRYDTSLGLLTKKFIQLLSQSPDGVLDLNK
AAEVLKVQKRRIYDITNVLEGIHLIKKKSKNNVQWMGCSLSEDGGMLAQCQGLSKEVTEL
SQEEKKLDELIQSCTLDLKLLTEDSENQRYPLCRQFSGDIRKISGLKDQTVIVVKAPPET
RLEVPDSIESLQIHLASTQGPIEVYLCPEETETHSPMKTNNQDHNGNIPKPASKANLLQQ
TEDQIPSNLEGPFVNLLPPLLQEDYLLSLGEEEGISDLFDAYDLEKLPLVEDFMCS

>gi568815592f:20302233_20590427|GENSCAN_predicted_CDS_8|1071_bp
atgcatcataaacacagcagctctttgtcagtcaatcagagagctgtttatcagacactg
aagaatccagcagctcctcacacagttccagagtcaggcctaagggggaggttatctcct
ccttgcattcctcaggcaaagcgaaggctggagctaggagaaagcggtcatcagtacctc
tcagatggtttaaaaacccccaagggcaaaggaagagctgcactacgaagtccagatagt
ccaaaaactccaaaatctccctcagaaaaaacgcggtatgatacgtctcttggtctgctc
accaagaagttcattcagctcctgagccagtcacccgatggggtattggatttgaacaag
gcagcagaagtgctaaaagtgcaaaagagaaggatttatgatatcaccaacgttctggaa
ggcatccacctcattaagaagaagtctaaaaacaacgtccaatggatgggctgcagtctg
tctgaggatgggggcatgctggcccagtgtcaaggcctgtcaaaagaagtgaccgagctc
agtcaggaagagaagaaattagatgaactgatccaaagctgcaccctggacctcaaactg
ttaaccgaggattcagagaatcaaagatatcctttgtgccgccagttctctggggatatt
cgaaaaattagtggccttaaagaccaaactgttatagttgtgaaagcccctccagaaaca
agacttgaagtgcctgactcaatagagagcctacaaatacatttggcaagtacccaaggg
cccattgaggtttacttatgtccagaagagactgaaacacacagtccaatgaaaacaaac
aaccaagaccacaatgggaatatccctaaacccgcttccaaagccaacctcttacagcag
actgaggaccaaattccttccaacctagaaggaccgtttgtgaacttactgcctcccctg
ctgcaagaggactatctcctgagcctcggggaggaggaaggcatcagcgatctcttcgat
gcttacgatttggaaaagctcccactggtggaagacttcatgtgtagttga

>gi568815592f:20302233_20590427|GENSCAN_predicted_peptide_9|172_aa
MATKLQQIKKKQNQALQFLKMVVRVGLLRKRRLSKGSKNVTGSAKECMGEEHSRKRGHLV
EKPSVLSIQGMDRRYYAIFPVGDGRCHLPEGKPFLDITGAREAQGWRDPCLLLLGAVTSS
DLVLLSNGPPMSASPRTDSLQAPPPGNGSTMGQSSLQRLINLRSHRFRCSDQ

>gi568815592f:20302233_20590427|GENSCAN_predicted_CDS_9|519_bp
atggccacaaaattacagcagattaagaaaaagcagaatcaggccttgcagtttttaaag
atggtggtcagagtaggcttattgagaaaaagacgtttaagtaaaggctcaaaaaatgtg
acggggtcagccaaagaatgtatgggggaagagcattcaaggaaaaggggccacctagtg
gaaaagccttcagtccttagcatccaaggaatggaccggagatactacgccatattccca
gtgggagatggccgctgccacctgcccgagggaaagccattcttggacataactggggcc
cgggaagcccaaggatggagggacccatgcctgctgctccttggggctgttacatcatct
gacctggttctcctttccaatgggccacccatgtcagcaagccccaggactgactcgctc
caagctccccctcctgggaatggaagcacgatgggacaaagctccttgcagaggctgata
aaccttagatcacacaggtttagatgctctgatcagtag

>gi568815592f:20302233_20590427|GENSCAN_predicted_peptide_10|126_aa
MRNPCDDGNVLHPDCINVNILVVILYCIVVLQDVTNGRPGPRKTETGETRLGHKRSCGHT
LPHMDPSATLTQKSGSKNQSKVRKSTRHSPEAAQTLDGERHDTYVPPRLFAHAQRRWPEE
IKLHHC

>gi568815592f:20302233_20590427|GENSCAN_predicted_CDS_10|381_bp
atgaggaatccttgtgatgatggaaatgttttgcatcctgactgtatcaatgtcaatatc
ctggttgtgatactgtattgtattgtagttttgcaagatgttaccaacgggagacctggc
ccaagaaaaactgaaactggagaaacaaggcttggccataaaaggagctgtggccacact
ctgccccacatggacccatcggccacccttacccagaagtcgggaagtaaaaaccagtcc
aaagtgagaaaatcaacccgccactctccggaagctgcacagactttagatggagagcgc
catgacacatacgtcccgccacgtttatttgcgcatgctcagcgacggtggcccgaagag
atcaaattacatcattgctga

>gi568815592f:20302233_20590427|GENSCAN_predicted_peptide_11|118_aa
MPSASCDTLLDDIEDIVSQEDSKPQDRHFVRKDVVPKVRRRNTQKYLQEEENSPPSDRPP
YTPITRGLLSLFHISLRCWRPNLGDRKRSVVRERAQNSLEGPAASLSVSSSLYGGPFT

>gi568815592f:20302233_20590427|GENSCAN_predicted_CDS_11|357_bp
atgccttctgcatcctgtgatacactactggatgacatcgaagatatcgtgtctcaggaa
gattcaaaaccacaagataggcattttgtaagaaaggatgttgtcccgaaggtacgaagg
cgaaatacccaaaaatatttgcaagaggaagaaaacagtccaccaagtgacaggcctcca
tacactcctattacaagaggacttctgtctctgttccacatttcccttcgttgttggcga
cctaaccttggtgaccgcaagcgatcggttgtgagagaaagagctcaaaattccttggaa
ggacctgctgcttctctttctgtttctagttcactctacggaggcccttttacttga