GENSCAN 1.0	Date run:  8-Nov-116	Time: 06:13:34

Sequence gi568815583f:78339792_78598140 : 258349 bp : 43.12% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +    638    707   70  1  1  114   94   199 0.845  24.31
 1.02 Intr +   1252   1430  179  2  2   76   72   372 0.641  34.04
 1.03 Intr +   3708   3821  114  2  0   98   58   142 0.866  12.84
 1.04 Term +   8136   8186   51  2  0  113   49   101 0.728   6.13
 1.05 PlyA +  12312  12317    6                               1.05

 2.06 PlyA -  13861  13856    6                               1.05
 2.05 Term -  21927  21756  172  2  1   97   43    47 0.061  -1.60
 2.04 Intr -  34853  34715  139  0  1   87   53    72 0.359   3.12
 2.03 Intr -  36602  36400  203  1  2    8   47   125 0.505  -0.67
 2.02 Intr -  37907  36830 1078  0  1  -43   53   418 0.119  14.43
 2.01 Init -  38931  38355  577  0  1   62   40   239 0.208  11.81
 2.00 Prom -  39555  39516   40                              -2.16

 3.08 PlyA -  40041  40036    6                               1.05
 3.07 Term -  45094  44996   99  1  0   61   37    77 0.082  -1.97
 3.06 Intr -  49370  49263  108  2  0    5   60   136 0.210   2.98
 3.05 Intr -  57616  57463  154  0  1  115   64     8 0.062   1.17
 3.04 Intr -  65507  65432   76  0  1  102   65    56 0.110   3.27
 3.03 Intr -  70981  70888   94  1  1   69   50   135 0.920   7.34
 3.02 Intr - 112692 112551  142  2  1   96   84    73 0.744   8.06
 3.01 Init - 118792 118716   77  1  2   72   78    60 0.511   1.96
 3.00 Prom - 130302 130263   40                              -4.26

 4.00 Prom + 135339 135378   40                              -2.26
 4.01 Init + 136493 136568   76  1  1   78  110    22 0.988   4.65
 4.02 Intr + 138506 138606  101  0  2   94   76   104 0.991   9.63
 4.03 Intr + 143527 143643  117  0  0  110  100     6 0.960   4.66
 4.04 Intr + 144970 145129  160  0  1   11   94   106 0.998   3.06
 4.05 Intr + 145914 146049  136  1  1   80  106    52 0.960   5.83
 4.06 Intr + 154118 154265  148  2  1   82   93    46 0.827   4.74
 4.07 Intr + 167805 167880   76  2  1   63  105    52 0.548   3.49
 4.08 Intr + 173293 173634  342  2  0  123   82   243 0.967  22.60
 4.09 Intr + 175231 175316   86  2  2   44  110    69 0.692   4.24
 4.10 Intr + 187607 187772  166  1  1   15   82   163 0.843   7.93
 4.11 Term + 193419 193879  461  1  2  123   42   279 0.994  22.05
 4.12 PlyA + 194831 194836    6                               1.05

 5.00 Prom + 195336 195375   40                              -4.76
 5.01 Init + 199547 199619   73  1  1   85   66    65 0.787   5.23
 5.02 Intr + 200629 200748  120  2  0   57   93   136 0.906  11.47
 5.03 Intr + 202692 202854  163  1  1   83   80   107 0.974   8.43
 5.04 Intr + 205078 205166   89  1  2  100   53    33 0.990   0.61
 5.05 Intr + 205843 205973  131  2  2   67   68    89 0.996   5.21
 5.06 Intr + 206784 206907  124  2  1   71   86    57 0.995   3.96
 5.07 Term + 208999 209153  155  2  2   71   39   137 0.903   5.18
 5.08 PlyA + 209380 209385    6                               1.05

 6.00 Prom + 221373 221412   40                              -4.26
 6.01 Init + 225929 226034  106  1  1  102   99   200 0.965  20.88
 6.02 Intr + 241020 241171  152  1  2   47   66    83 0.038   1.88
 6.03 Intr + 248523 248632  110  2  2   50   97    47 0.867   0.88
 6.04 Intr + 250014 250845  832  0  1   63   58   424 0.362  28.30
 6.05 Term + 253301 253462  162  1  0  121   48    11 0.290  -1.66
 6.06 PlyA + 254309 254314    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  81077  81196  120  1  0  103   85    43 0.917   6.19
S.002 Term +  83156  83287  132  1  0   80   43   113 0.962   4.09
S.003 Term +  91459  91549   91  1  1   96   45    96 0.822   3.29


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815583f:78339792_78598140|GENSCAN_predicted_peptide_1|137_aa
MPNFAGTWKMRSSENFDELLKALGVNAMLRKVAVAAASKPHVEIRQDGDQFYIKTSTTVR
TTEINFKVGEGFEEETVDGRKCRSLATWENENKIHCTQTLLEGDGPKTYWTRELANDELI
LTFGADDVVCTRIYVRE

>gi568815583f:78339792_78598140|GENSCAN_predicted_CDS_1|414_bp
atgcccaacttcgccggcacctggaagatgcgcagcagcgagaatttcgacgagctgctc
aaggcactgggtgtgaacgccatgctgaggaaagtggccgtagcggctgcgtccaagccg
cacgtggagatccgccaggacggggatcagttctacatcaagacatccaccacggtgcgc
accactgagatcaacttcaaggtcggagaaggctttgaggaggagaccgtggacggacgc
aagtgcaggagtttagccacttgggagaatgagaacaagatccactgcacgcaaactctt
cttgaaggggacggccccaaaacctactggacccgtgagctggccaacgatgaacttatc
ctgacgtttggcgccgatgacgtggtctgcaccagaatttatgtccgagagtga

>gi568815583f:78339792_78598140|GENSCAN_predicted_peptide_2|722_aa
MDKFLDTYTLPRLNQEEVESLNRPITGSEIEAIIKSLPTKKSPGPDGFTAEFYQRYNEEL
VPFLLKLFQSIEKEGILSNSFYEASIILIPKPGRDTTKKENFRPISLMNIDAKILNKILA
NRIQQHIKKLIHHNQVSFIPGMQGWFNIHKSMKVIQHINRTKDKNYMIISIDAEKAFDKI
QQPFMLKTLKKLGIQLTKDVKDLFKENYKALLNEIKEDTNKWKNIPCSWIGRINIMKMAI
LPKVIYRFNAIPIKPPMTFFTELEKTTLKFIWNQKRVCIAKTILSQKNKAGGITLPDFKL
YYKATVTKAAWYCYQNRDIDQWNRTEPSEIIPHIYNHLIFDKPDKNKQWGKDSLFNKWCW
ENWLAIWRKLKLDPFLTPYTKINSRWIKDLNVRPKIIKTLEENLGNTIQDIDMGKDFMTK
TPKAMATKAKIDKWDLVKLKSFFTAKETTIGVNRQPTEWEKIFTIYPSDKVLISRIHKEL
KQIYKKKPKNPIKKWAKDMNRHFSKEDIYAANRHMKKCSSPLAIREMQIKTTMRYHLTPV
RMAIIKKSGNNSKDLEPTQMSINDDWIKKMWHIYIMEYDAAIKKDEFLSFVGTWMKLETI
ILSKLSQGEKTKHRMFSLIGQGPVQPQHLVLAWHRVECSFPENPHKVPTPGLLSGSENES
IVGPGRQSLPQSTSDDPTVLGLPDPRSQQTQTKESTFCLNAPAAVPERALIGLAWITCLS
QN

>gi568815583f:78339792_78598140|GENSCAN_predicted_CDS_2|2169_bp
atggataaattcctggacacatacaccctcccaagactaaaccaggaagaagttgaatcc
ctaaatagaccaataacaggctctgaaattgaggcaataattaagagcctaccaaccaaa
aaaagtccaggaccagacggattcacagctgaattctaccagaggtataacgaggagctg
gtaccattccttctgaaactattccaatcaatagaaaaagagggaatcctctctaactca
ttttatgaagccagcatcatcctgataccaaagcctggaagagacacaacaaaaaaagag
aattttagaccaatatccctaatgaacatcgatgcaaaaatcctcaataaaatactggca
aaccgaatccagcagcacatcaaaaagcttatccaccacaatcaagttagcttcatccct
gggatgcaaggctggttcaacatacacaaatcaatgaaagtaatccagcatataaacaga
accaaagacaaaaactacatgattatctcaatagatgcagaaaaggcctttgacaaaatt
caacagcccttcatgctaaaaactctcaaaaaactaggaatccaacttacaaaggatgtg
aaggacctcttcaaggagaactacaaagcactgctcaacgaaataaaagaggacacaaac
aaatggaagaacattccatgctcatggataggaagaatcaatatcatgaaaatggccata
ctgcccaaggtaatttatagattcaatgccatccccatcaagccaccaatgactttcttc
acagaattggaaaaaactactttaaagttcatatggaaccaaaaaagagtctgcattgcc
aagacaatcctaagccaaaagaacaaagctggaggcatcacgctacctgacttcaaacta
tactacaaggctacagtaaccaaagcagcatggtactgctaccaaaacagagatatagat
caatggaacagaacagagccctcagaaataataccacacatctacaaccatctgatcttt
gacaaacctgacaaaaacaagcaatggggaaaggattccctatttaataaatggtgctgg
gaaaactggctagccatatggagaaagctgaaactggatcctttccttacaccttataca
aaaattaattcaagatggattaaagacttaaatgttagacctaaaatcataaaaacccta
gaagaaaacctaggcaataccattcaggacatagacatgggcaaggacttcatgactaaa
acaccaaaagcaatggcaacaaaagccaaaattgacaaatgggatctagttaaactaaag
agcttctttacagcaaaagaaactaccatcggagtgaacagacaacctacagaatgggag
aaaatttttacaatctacccatctgacaaagtgctaatatccagaatccacaaagaactt
aaacaaatttacaagaaaaaaccaaagaaccccatcaaaaagtgggcaaaggatatgaac
agacacttctcaaaagaagacatttatgcagccaacagacacatgaaaaaatgctcatca
ccactggccatcagagaaatgcaaatcaaaaccacaatgagataccatctcacaccagtt
agaatggcgatcattaaaaagtcaggaaacaacagcaaagacttggaaccaacccaaatg
tccatcaatgatgactggattaagaaaatgtggcacatatacatcatggaatacgatgca
gccataaaaaaggatgagttcttgtcctttgtagggacatggatgaagctggaaaccatt
attctgagcaaactatcgcaaggagagaaaaccaaacaccgcatgttctcactcataggg
cagggccctgtgcagcctcagcacctggtgctggcctggcaccgagttgagtgctcattc
cctgagaacccgcataaggtgcccacaccaggccttctcagtggctctgaaaatgagagc
atagtgggacctgggaggcagagtctcccgcaaagtaccagtgatgaccccacagttcta
ggcttacctgatccccgtagccagcaaacccagacgaaagagagcaccttctgcctaaat
gctccggctgcggtcccagagagggctctgattggcttagcttggatcacatgcctgtct
cagaactga

>gi568815583f:78339792_78598140|GENSCAN_predicted_peptide_3|249_aa
MMTSWERWLMLVILALWEVRLEDHLREYNCSYGFNYHYIYTNNSKIFSVVQVCLLSSKTT
CPIQEVNMFTLILLIEFGVVAAPEGQQSTAVYHWCNTAVLDPLALAGMMAVAAPDDPPPP
SVSSSKPSTVGTRQLSGPWHARLCPREADIMELIKPTWTQVPGIQEAVLSHPPQQSPADA
GLPGSGQRSSKGAVPPCRLHIPEVMAAVITDKDVPMLPQSRLLQDAWGLGDPWTAVRATL
TDYGKEQSS

>gi568815583f:78339792_78598140|GENSCAN_predicted_CDS_3|750_bp
atgatgaccagctgggaacggtggctcatgcttgtaatcctagcactttgggaggtgagg
ctggaggatcatttgagggagtacaactgctcctatggcttcaattatcactacatctac
actaataattccaaaatattttctgtagtccaagtctgtcttctaagctccaaaaccaca
tgcccgattcaggaggtgaacatgtttactttaatactgctgattgaatttggtgtggtc
gccgcacctgagggccagcagtccacagctgtctaccactggtgcaataccgcggtgctg
gacccactggcattggctggcatgatggcagtggctgctcctgacgacccgccaccgcca
tcggtatcatcttccaagccatcaacagtgggcaccaggcagctgtcagggccctggcat
gcaaggctgtgcccaagggaagcggacatcatggagctaattaaaccaacgtggacccaa
gtgcctggaattcaggaggctgtcctctcccacccaccccaacagagccccgcagacgct
ggattaccaggaagtggacaaagaagcagcaaaggggcagttcctccatgtcgtctgcac
atcccagaagtgatggccgcggtcattactgacaaagatgtacccatgttgccacagtct
cggctgctgcaggatgcctggggtctgggcgatccatggacagcagtgagggctacattg
acagattacggcaaagagcagagcagttag

>gi568815583f:78339792_78598140|GENSCAN_predicted_peptide_4|622_aa
MCPEYGAILSFFPVDNVTLKHLEHTGFSKAKLESMETYLKAVKLFRNDQNSSGEPEYSQV
IQINLNSIVPSVSGPKRPQDRVAVTDMKSDFQACLNEKVGFKGFQIAAEKQKDIVSIHYE
GSEYKLSHGSVVIAAVISCTNNCNPSVMLAAGLLAKKAVEAGLRVKPYIRTSLSPGSGMV
THYLSSSGVLPYLSKLGLTPREFNSYGARRGNDAVMTRGTFANIKLFNKFIGKPAPKTIH
FPSGQTRRCAAEAALPVCGKAGSTPGRRVAADIMSSGNYQQSEALSKPTFSEEQASALVE
SVFGLKVSKVRPLPSYDDQNFHVYVSKTKDGPTEYVLKISNTKASKNPDLIEVQNHIIMF
LKAAGFPTASVCHTKGDNTASLVSVGRPIAELPVSPQLLYEIGKLAAKLDKTLQLSSLHR
ENFIWNLKNVPLLEKYLYALGQNRNREIVEHVIHLFKEEVMTKLSHFRECINHGDLNDHN
ILIESSKSASGNAEYQVSGILDFGDMSYGYYVFEVAITIMYMMIESKSPIQVGGHVLAGF
ESITPLTAVEKGALFLLVCSRFCQSLVMAAYSCQLYPENKDYLMVTAKTGWKHLQQMFDM
GQKAVEEIWFETAKSYESGISM

>gi568815583f:78339792_78598140|GENSCAN_predicted_CDS_4|1869_bp
atgtgtccggaatatggtgctatcctcagctttttccctgttgacaatgtgacattaaaa
catttagaacatacaggttttagcaaagccaaactcgaatcaatggaaacataccttaaa
gctgtgaaattgtttcgaaatgaccagaattcttcaggagaacctgaatactcccaggtg
atccagattaatctgaattcaatagttccatctgttagtggtccaaaaagacctcaggat
agagttgctgtgacagatatgaaaagcgatttccaggcttgcttaaatgaaaaggttgga
tttaaaggcttccaaattgcagctgaaaaacaaaaggatattgtctccattcattatgaa
ggaagtgaatataagctgtctcatggatcagtggtcattgctgcagttatcagttgtacc
aataattgcaatccatctgtcatgcttgctgcaggtcttttggctaaaaaggctgttgaa
gctggtctgcgtgttaaaccttatataagaacaagtttatctccaggcagtgggatggtt
acacattacctcagttcaagtggagtattaccatatctaagtaagcttggccttacccct
cgtgaattcaactcttacggagctcgaagaggtaatgatgctgtaatgacaagaggcact
tttgcaaatatcaagctttttaataagtttattggaaaaccagctcctaaaacaattcat
tttccatcaggacagacgcgccggtgcgcggccgaggccgcactacctgtctgcgggaaa
gcgggatccaccccaggacgtcgggtcgctgccgacataatgtcaagtggaaactatcag
cagtcagaggctcttagcaaacccactttcagtgaggaacaagcctctgcgttagtggag
tcagtgtttgggttgaaagtttccaaggtccggccacttcctagctatgatgaccaaaac
tttcatgtctacgtttcaaaaaccaaagatggcccaactgaatatgtcctcaaaataagc
aacaccaaggctagcaaaaatccagacctgattgaagtgcagaatcacatcatcatgttt
ctgaaagccgctggatttccaacagcctctgtgtgtcacactaaaggagacaacacagct
tctctcgtgtctgtaggaagacccatcgctgagcttcccgtcagcccccagctattgtat
gaaattggaaaactagctgccaaattggataagacactgcagttaagtagtcttcatcgg
gagaacttcatctggaatctgaaaaatgttcctcttctggagaaatacctgtatgccctg
ggccagaatcgaaaccgagagattgttgagcatgtcattcatctgttcaaggaggaagta
atgaccaaattaagtcattttcgagaatgtatcaatcacggagatcttaatgaccataat
attttaatagagtccagcaagtcagcctctggaaatgctgaatatcaagtgtctgggatt
ttagactttggtgacatgagctatggctactatgtgtttgaagtggcaattaccatcatg
tacatgatgattgagagcaagagtcctatacaagtaggaggccatgtccttgcagggttt
gaaagcatcaccccactgacagctgtagagaagggtgctttgtttttacttgtatgcagt
cgtttttgtcagtcacttgtcatggctgcatactcttgccagctatacccagagaacaaa
gactatctcatggttactgcaaaaaccgggtggaaacacttacagcaaatgtttgacatg
ggtcagaaagctgtagaagaaatctggtttgaaactgccaaatcctatgaatctgggatc
tccatgtga

>gi568815583f:78339792_78598140|GENSCAN_predicted_peptide_5|284_aa
MDNEHRNKYDNFSKEDKMVRVYADAVLRMRGGHISSGYSVSGGGLFFRGVKGSVDISGLQ
GLPSGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEY
LLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYG
GWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLT
RENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREKKEKEQKEKDK

>gi568815583f:78339792_78598140|GENSCAN_predicted_CDS_5|855_bp
atggataatgaacacagaaacaagtatgacaatttcagtaaagaagataaaatggtgcga
gtatatgctgacgcggttctgcgcatgcgcgggggccatattagcagcggttattcggtg
agcggtggtggtttattcttccgtggagttaagggctccgtggacatctcaggtcttcag
ggtcttccatctggtcgcttataccaagttgaatatgccatggaagctattggacatgca
ggcacctgtttgggaattttagcaaatgatggtgttttgcttgcagcagagagacgcaac
atccacaagcttcttgatgaagtctttttttctgaaaaaatttataaactcaatgagtat
ttattacagtatcaggagccaataccttgtgagcagttggttacagcgctgtgtgatatc
aaacaagcttatacacaatttggaggaaaacgtccctttggtgtttcattgctgtacatt
ggctgggataagcactatggctttcagctctatcagagtgaccctagtggaaattacggg
ggatggaaggccacatgcattggaaataatagcgctgcagctgtgtcaatgttgaaacaa
gactataaagaaggagaaatgaccttgaagtcagcacttgctttagctatcaaagtacta
aataagaccatggatgttagtaaactctctgctgaaaaagtggaaattgcaacactaaca
agagagaatggaaagacagtaatcagagttctcaaacaaaaagaagtggagcagttgatc
aaaaaacatgaggaagaagaagccaaagctgagcgtgagaagaaagaaaaagaacagaaa
gaaaaggataaatag

>gi568815583f:78339792_78598140|GENSCAN_predicted_peptide_6|453_aa
MAARGSGPRALRLLLLVQLVAGRCGLAGAAGGAQRGLSEPSSIAKHEDSLLKDLFQDYER
WVRPVEHLNDKIKIKFGLAISQLVDVEWIDVKLRWNPDDYGGIKVIRVPSDSVWTPDIVL
FDNADGRFEGTSTKTVIRYNGTVTWTPPANYKSSCTIDVTFFPFDLQNCSMKFGSWTYDG
SQVDIILEDQDVDKRDFFDNGEWEIVSATGSKGNRTDSCCWYPYVTYSFVIKRLPLFYTL
FLIIPCIGLSFLTVLVFYLPSNEGEKICLCTSVLVSLTVFLLVIEEIIPSSSKVIPLIGE
YLVFTMIFVTLSIMVTVFAINIHHRSSSTHNAMAPLVRKIFLHTLPKLLCMRSHVDRYFT
QKEETESGSGPKSSRNTLEAALDSIRYITRHIMKENDVREVVEDWKFIAQVLDRMFLWTF
LFVSIVGSLGLFVPVIYKWANILIPVHIGNANK

>gi568815583f:78339792_78598140|GENSCAN_predicted_CDS_6|1362_bp
atggcggcgcgggggtcagggccccgcgcgctccgcctgctgctcttggtccagctggtc
gcggggcgctgcggtctagcgggcgcggcgggcggcgcgcagagaggattatctgaacct
tcttctattgcaaaacatgaagatagtttgcttaaggatttatttcaagactacgaaaga
tgggttcgtcctgtggaacacctgaatgacaaaataaaaataaaatttggacttgcaata
tctcaattggtggatgtggaatggatagatgtaaaattaagatggaaccctgatgactat
ggtggaataaaagttatacgtgttccttcagactctgtctggacaccagacatcgttttg
tttgataatgcagatggacgttttgaagggaccagtacgaaaacagtcatcaggtacaat
ggcactgtcacctggactccaccggcaaactacaaaagttcctgtaccatagatgtcacg
tttttcccatttgaccttcagaactgttccatgaaatttggttcttggacttatgatgga
tcacaggttgatataattctagaggaccaagatgtagacaagagagatttttttgataat
ggagaatgggagattgtgagtgcaacagggagcaaaggaaacagaaccgacagctgttgc
tggtatccgtatgtcacttactcatttgtaatcaagcgcctgcctctcttttataccttg
ttccttataataccctgtattgggctctcatttttaactgtacttgtcttctatcttcct
tcaaatgaaggtgaaaagatttgtctctgcacttcagtacttgtgtctttgactgtcttc
cttctggttattgaagagatcataccatcatcttcaaaagtcatacctctaattggagag
tatctggtatttaccatgatttttgtgacactgtcaattatggtaaccgtcttcgctatc
aacattcatcatcgttcttcctcaacacataatgccatggcgcctttggtccgcaagata
tttcttcacacgcttcccaaactgctttgcatgagaagtcatgtagacaggtacttcact
cagaaagaggaaactgagagtggtagtggaccaaaatcttctagaaacacattggaagct
gcgctcgattctattcgctacattacaagacacatcatgaaggaaaatgatgtccgtgag
gttgttgaagattggaaattcatagcccaggttcttgatcggatgtttctgtggactttt
cttttcgtttcaattgttggatctcttgggctttttgttcctgttatttataaatgggca
aatatattaataccagttcatattggaaatgcaaataagtga