GENSCAN 1.0	Date run:  6-Nov-116	Time: 02:06:20

Sequence gi568815579f:54639506_54756112 : 116607 bp : 45.45% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3986   4025   40  1  1   65  105    25 0.705   2.25
 1.02 Intr +   4415   4585  171  0  0   56   48   105 0.589   3.21
 1.03 Term +  12580  12725  146  2  2  109   41   100 0.638   5.47
 1.04 PlyA +  13936  13941    6                               1.05

 2.00 Prom +  21500  21539   40                              -8.26
 2.01 Init +  23529  23562   34  2  1   87   89    82 0.757   6.30
 2.02 Intr +  24249  24533  285  1  0   55   94   152 0.824   9.81
 2.03 Intr +  24681  24980  300  1  0  118   94   115 0.688  11.81
 2.04 Intr +  25294  25344   51  2  0  128  105   -38 0.493   0.78
 2.05 Intr +  26894  26931   38  0  2  126   65    25 0.254   1.98
 2.06 Intr +  27797  27944  148  1  1  -25   77   138 0.194   1.21
 2.07 Intr +  31926  32142  217  1  1  124   49   115 0.213   8.76
 2.08 Intr +  32541  32582   42  0  0   74   94    48 0.117   1.36
 2.09 Intr +  57288  57559  272  0  2  104   94    28 0.032   2.19
 2.10 Intr +  57707  58009  303  0  0  127   94    79 0.603   8.96
 2.11 Intr +  58201  58440  240  2  0   -2   94   244 0.608  13.52
 2.12 Intr +  58690  58992  303  2  0   93   94   146 0.611  12.26
 2.13 Intr +  61931  62006   76  0  1   92   68    35 0.330   0.47
 2.14 Intr +  64448  64491   44  2  2   84   92    24 0.112   0.28
 2.15 Intr +  68883  68933   51  1  0   96  109   -13 0.160   0.48
 2.16 Intr +  69097  69381  285  2  0   84  110   111 0.308  10.21
 2.17 Intr +  69531  69797  267  1  0  104   33    88 0.633   2.40
 2.18 Intr +  70050  70346  297  1  0  117   94   259 0.981  26.25
 2.19 Intr +  70602  70904  303  1  0  117   94   177 0.997  17.76
 2.20 Term +  78786  78946  161  1  2   46   37   154 0.472   4.20
 2.21 PlyA +  78952  78957    6                               1.05

 3.00 Prom +  81894  81933   40                              -1.36
 3.01 Init +  84992  85025   34  1  1   90   97    56 0.902   5.89
 3.02 Intr +  86548  86832  285  2  0  129   71    73 0.990   7.01
 3.03 Intr +  88142  88405  264  0  0   63   66   213 0.459  14.08
 3.04 Intr +  88880  88915   36  0  0   65   94    40 0.429   0.53
 3.05 Intr +  95748  95852  105  1  0  107   89    40 0.956   6.19
 3.06 Intr +  96315  96367   53  1  2  109   92    21 0.922   3.23
 3.07 Term +  96466  96591  126  0  0  111   41    68 0.894   2.68
 3.08 PlyA +  97529  97534    6                               1.05

 4.00 Prom + 100526 100565   40                              -5.96
 4.01 Init + 101602 101654   53  0  2   74   53    42 0.117  -0.07
 4.02 Intr + 102590 102774  185  2  2   56   94   198 0.359  16.63
 4.03 Intr + 104290 104583  294  2  0   77   94   194 0.892  15.88
 4.04 Intr + 107830 107880   51  2  0  141  117   -20 0.945   5.08
 4.05 Intr + 112144 112248  105  2  0  113  106    31 0.994   7.59
 4.06 Intr + 112711 112763   53  2  2  114   92    21 0.999   3.73
 4.07 Term + 112862 113014  153  1  0  109   42   152 0.975  10.62
 4.08 PlyA + 113528 113533    6                               1.05

 5.03 PlyA - 113937 113932    6                               1.05
 5.02 Term - 115558 115316  243  1  0  131   39    87 0.582   4.00
 5.01 Intr - 116522 116244  279  2  0   23   67   150 0.247   4.07

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Init -  48994  48864  131  1  2   48   89   107 0.852   6.42


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815579f:54639506_54756112|GENSCAN_predicted_peptide_1|118_aa
MGLTAQGHARRDEAWTCNFPEASPGLDAMVRIPQCCVDGRAEGGKETPRGGSEKKKKPPV
TLTWTGQTQKDPCCRGPLEVTYAQLDHQAFTWRTAQAVSPESMVPMAESSMYTALARH

>gi568815579f:54639506_54756112|GENSCAN_predicted_CDS_1|357_bp
atgggacttactgcccaaggtcatgcacgcagggatgaagcatggacctgcaactttcct
gaagcatctccagggctggatgccatggtaaggatcccgcaatgctgtgttgatggacgg
gctgaaggagggaaggagaccccacggggaggctctgagaagaagaaaaagcccccagtc
actctcacttggacaggacagactcagaaagacccctgctgcaggggacccctggaggtg
acatatgctcagctggaccaccaggccttcacttggaggacagcccaggctgtgtcccca
gagtccatggtgcccatggctgagtctagcatgtacacagccctcgccaggcactga

>gi568815579f:54639506_54756112|GENSCAN_predicted_peptide_2|1238_aa
MIPTFTALLCLGPLPKPTLWAEPGSVISWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQ
NPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP
LVTSGKSVTLLCQSRSPMDTFLLIKERAAHPLLHLRSEHGAQQHQAEFPMSPVTSVHGGT
YRCFSSHGFSHYLLSHPSDPLELIVSGSLEGPRPSPTRSVSTAGPAQLLTSREKTSLSSE
KPGRRGPRDPLMDEPLQAEETAVQRPRGSSELLQEGRVRLQPNGQGFYSKSTLSAQPSPV
LTSGGKVTPLCPSRLGFDRFILTVEGEHKLFCLLDPEKQSDGQFQALILADPMTSSHRWS
APSDPPGHPDRRPTLWAKPGSVISWRSPMTMWCQGTLEAQEYHLYKEGSTEPWDRTNPLE
TRNKARYSIPSMTQHHAVRYQCYYLSPAGWSEPSDPLELVMTGFYSKPTLSALPSPVVAS
GGKVTLRCGSQKGYHHFVLMKEGEHQLPRTLDSQQLHSGGFQALFPVGPVTPSHRWRFTC
YYYYMNTPQVWSHPSDPLEILPSETLTLQCGSDVGYDRFTLYKEGECDFLQRPGQQPQAG
LSQANFTLGPVRGSHGGQYRCSGAHNLSSEWSAPSDPLDILIAGQIPGRPSLSVQLWPTV
ASGENVTLLCQSQEWMHTFLLTKEGAAHPLLCLRSKYGAHKYQAEFPMSPVTSAHTGTYR
CYGSLSSDPYLLSHPSGPVELVVSDAICVVSPEISPPGINTLAFEVTTQWRLQETFLLSS
TVPCRNSSPWLSLGQKAQALAGTLPKPSLWAEPGSVITWESPMTLWCQGTLDTQGYYLTK
EGNPMTWYQQSPPEPRNKTNFFIPSMREHHAGRYHCHYLSPAGWSERSEPLELVVTGAHR
KPTLSALPSPVVTSGENVTIQCSSRVGFHRFILIEEGENKLSWMLDSQELSKGLSLVPGP
VPCGPCGCQSPVDVQMLWALHELPLGVSRKPSLLTLQGPVVAPGENLTLQCGSDVGYDKF
TLYKEGGHDLVQGSGRQPQAGLSQANFTLGPVRVSHGGQYRCYGAHNLSSEWSAPSDPLS
ILIAGQIRGRPSLSVQPGPTVASGENVTLLCQSREQLDTFLLTKEGAAHHPLRLRSEHQA
QQHQAEFPMSPVTSAHAGTYRCYSSRRFFPYLLSHPSDPLELVVSEIEKIVKDYYEHLYT
NKLENLEEMDKFLVTQNLSYFNQEESENLNRPITSSEI

>gi568815579f:54639506_54756112|GENSCAN_predicted_CDS_2|3717_bp
atgatccccaccttcacggctctgctctgcctcgggcccctccccaaacccaccctctgg
gctgagccaggctctgtgatcagctgggggaactctgtgaccatctggtgtcaggggacc
ctggaggctcgggagtaccgtctggataaagaggaaagcccagcaccctgggacagacag
aacccactggagcccaagaacaaggccagattctccatcccatccatgacagaggactat
gcagggagataccgctgttactatcgcagccctgtaggctggtcacagcccagtgacccc
ctggagctggtgatgacaggagcctacagtaaacccaccctttcagccctgccgagtcct
cttgtgacctcaggaaagagcgtgaccctgctgtgtcagtcacggagcccaatggacact
tttcttctgatcaaggagcgggcagcccatcccctactgcatctgagatcagagcacgga
gctcagcagcaccaggctgaattccccatgagtcctgtgacctcagtgcacggggggacc
tacaggtgcttcagctcacacggcttctcccactacctgctgtcacaccccagtgacccc
ctggagctcatagtctcaggatccttggagggtcccaggccctcacccacaaggtccgtc
tcaacagctggtccagcccagctgctgacgtccagggagaaaacttctctgtcatctgag
aagcctggacggagagggccacgtgatcctctaatggacgagcccctgcaggcagaggaa
acagccgtgcaaaggccccgaggcagcagcgagctcttgcaggaaggccgcgtgaggctg
cagccaaatgggcaaggattctacagcaaatccaccctctcagctcagcccagccctgtc
ctgacctcaggaggtaaggtgacaccattatgtccttcacggctgggatttgacaggttc
attctgaccgtggaaggtgaacacaagctattctgtctcctggaccccgaaaaacagtcc
gatggacagttccaagccctgatcctggcagaccccatgacttctagccacaggtggtca
gcccccagtgacccccctggacatcctgatcgcaggcccaccctctgggctaagccaggc
tctgtgatcagctggagaagccccatgaccatgtggtgtcaggggaccctggaagcccag
gagtaccatctatataaagagggaagcacagagccctgggacagaacgaatccactggag
accaggaacaaggccagatactccatcccatccatgacacagcaccatgcagtgagatat
cagtgttactatctcagccctgcgggctggtcagagcccagtgaccccctggagctggtg
atgacaggattctacagcaaacccaccctctcagccctgcccagccctgtggtggcctca
ggagggaaagtgaccctccgatgtggctcacagaagggatatcaccattttgttctgatg
aaggaaggagaacaccagctcccccggaccctggactcacagcagctccacagtgggggg
ttccaggccctgttccctgtgggccccgtgacccccagccacaggtggaggttcacatgc
tattactattatatgaacaccccccaggtgtggtcccaccccagtgaccccctggagatt
ctgccctcagagaccctgaccctccagtgtggctctgatgtcggctacgacagattcact
ctgtacaaggagggggaatgtgacttcctccagcgccctggccagcagccccaggctggg
ctctcccaggccaacttcaccctgggccctgtgaggggctcccacgggggccagtacaga
tgctccggtgcacacaacctctcctccgagtggtcggcccccagtgaccccctggacatc
ctgatcgcaggacagatccctggcagaccctccctctcagtgcagttgtggcccacagtg
gcctcaggagagaacgtgaccctgctgtgtcaatcacaagagtggatgcacactttcctt
ctgaccaaggagggggcagcccatcccctgctgtgtctgagatcaaagtacggagctcat
aagtaccaggctgaattccccatgagtcctgtgacctcagcccacacggggacctacagg
tgctacggctcactcagctccgacccctacctgctgtctcaccccagtggccccgtggag
ctcgtggtctcagatgctatctgtgtagtttctcctgaaatatcaccacctggaatcaac
acactggcatttgaagtcacgacccaatggcgtctacaagagaccttccttctcagctca
actgtgccctgcagaaactcttctccatggctgagtctgggccagaaagcccaagcactt
gcagggaccctccccaaacccagcctctgggctgagccaggctctgtgattacctgggag
agccccatgaccctctggtgccaggggaccctggatacccagggttactatctcaccaag
gaaggaaaccccatgacctggtaccaacagagcccaccagagcccaggaacaagaccaac
ttcttcatcccatccatgagagagcaccatgcagggagataccactgtcactatctcagc
cctgcaggctggtcagagcgcagcgagcccctggagctggtggtgacaggagcccacaga
aaacccactctctcagccctgccgagccctgtggtgacctcaggagagaacgtgaccatc
cagtgtagctcaagggtgggatttcacaggttcattttgattgaggaaggagaaaacaag
ctctcctggatgctggactcacaggaactctccaaggggctgtcccttgtccctggccct
gttccctgtgggccgtgtggctgccagtcaccggtggatgttcagatgctatgggcatta
cacgaacttcccctgggcgtgtctaggaagccctccctcctgaccctgcagggccctgtc
gtggcccctggggagaatctgaccctccagtgtggctctgatgtcggctatgacaaattc
actctgtacaaggaggggggacatgacctcgtccagggctctggccggcagccccaggct
gggctctcccaggccaacttcaccctgggccctgtgagggtctcccacgggggccagtac
agatgctacggtgcacacaacctctcctccgagtggtcggcccccagtgaccccctgagc
atcctgatcgcaggacagatccgtggcagaccctccctctcggtgcagccgggccccacg
gtggcctcaggagagaacgtgaccctgctgtgtcagtcacgggagcagttggacactttc
cttctgaccaaggagggggcagcccatcacccactgcgtctgagatcagagcaccaagct
cagcagcaccaggctgaattccccatgagtcctgtgacctcagcccacgcggggacctac
aggtgctacagctcacgcagattcttcccctacctgctgtctcaccccagtgaccccctg
gagctcgtggtctcagaaatagaaaagatcgtcaaagactattatgaacacctctataca
aacaagctagaaaacctagaagaaatggataaattcctggtaacacaaaatttatcatat
ttcaaccaggaagaaagtgaaaacctgaacagaccaataacaagttcagaaatttaa

>gi568815579f:54639506_54756112|GENSCAN_predicted_peptide_3|300_aa
MSLMVVSMACVGGQDKPFLSAWPGTVVSEGQHVTLQCRSRLGFNEFSLSKEDGMPVPELY
NRIFRNSFLMGPVTPAHAGTYRCCSSHPHSPTGWSAPSNPVVIMVTGPLVKSGETVILQC
WSDVRFERFLLHREGITEDPLRLVGQLHDAGSQVNYSMGPMTPALAGTYRCFGSVTHLPY
ELSAPSDPLDIVVVVELSSSQDTMAPGNSRNLHVLIGTSVVIIPFAILLFFLLHRWCANK
KNAVVMDQEPAGNRTVNREDSDEQDPQEVTYAQLNHCVFTQRKITRPSQRPKTPPTDTSV

>gi568815579f:54639506_54756112|GENSCAN_predicted_CDS_3|903_bp
atgtcgctcatggtcgtcagcatggcgtgtgttggtggtcaggacaagcccttcctctct
gcctggcccggcactgtggtgtctgaaggacaacatgtgactcttcagtgtcgctctcgt
cttgggtttaatgaattcagtctgtccaaagaagacgggatgcctgtccctgagctctac
aacagaatattccggaacagctttctcatgggccctgtgaccccagcacatgcagggacc
tacagatgttgcagttcacacccacactcccccactgggtggtcggcacccagcaaccct
gtggtgatcatggtcacaggtcccctggtgaaatcaggagagacggtcatcctgcaatgt
tggtcagatgtcaggtttgagcgcttccttctgcacagagaggggatcactgaggacccc
ttgcgcctcgttggacagctccacgatgcgggttcccaggtcaactattccatgggtccc
atgacacctgcccttgcagggacctacagatgctttggttctgtcactcacttaccctat
gagttgtcggctcccagtgaccctctggacatcgtggtcgtagtggagctgtcatcgtcc
caggacaccatggccccaggtaactccagaaacctgcacgttctgattgggacctcagtg
gtcatcatcccctttgctatcctcctcttctttctccttcatcgctggtgtgccaacaaa
aagaatgctgttgtaatggaccaagagcctgcagggaacagaacagtgaacagggaggac
tctgatgaacaagaccctcaggaggtgacatacgcacagttgaatcactgcgttttcaca
cagagaaaaatcactcgcccttctcagaggcccaagacacccccaacagataccagcgtg
taa

>gi568815579f:54639506_54756112|GENSCAN_predicted_peptide_4|297_aa
MLLIIFYSSNRKPTLEPREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV
THSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSYDMYHLSREG
EAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNP
SNSWPSPTEPSSETGNPRHLHVLIGTSVVIILFILLLFFLLHRWCCNKKNAVVMDQEPAG
NRTVNREDSDEQDPQEVTYAQLNHCVFTQRKITRPSQRPKTPPTDIIVYTELPNAEP

>gi568815579f:54639506_54756112|GENSCAN_predicted_CDS_4|894_bp
atgcttctgataattttctacagcagcaacaggaaaccaacactggaacccagagaaggg
aagtttaaggacactttgcacctcattggagagcaccatgatggggtctccaaggccaac
ttctccatcggtcccatgatgcaagaccttgcagggacctacagatgctacggttctgtt
actcactccccctatcagttgtcagctcccagtgaccctctggacatcgtcatcacaggt
ctatatgagaaaccttctctctcagcccagccgggccccacggttctggcaggagagagc
gtgaccttgtcctgcagctcccggagctcctatgacatgtaccatctatccagggagggg
gaggcccatgaacgtaggttctctgcagggcccaaggtcaacggaacattccaggccgac
tttcctctgggccctgccacccacggaggaacctacagatgcttcggctctttccgtgac
tctccatacgagtggtcaaactcgagtgacccactgcttgtttctgtcacaggaaaccct
tcaaatagttggccttcacccactgaaccaagctccgaaaccggtaaccccagacacctg
catgttctgattgggacctcagtggtcatcatcctcttcatcctcctcctcttctttctc
cttcatcgctggtgctgcaacaaaaaaaatgctgttgtaatggaccaagagcctgcaggg
aacagaacagtgaacagggaggactctgatgaacaagaccctcaggaggtgacatatgca
cagttgaatcactgcgttttcacacagagaaaaatcactcgcccttctcagaggcccaag
acacccccaacagatatcatcgtgtacacggaacttccaaatgctgagccctga

>gi568815579f:54639506_54756112|GENSCAN_predicted_peptide_5|173_aa
AGPSWTEVKLTLSAYLHPRTGLSAVQRPSLQAQIPTTSPYPHHKPISPLQANISTLGLYL
HSRPISPLQADISIIGPYRQSRPISPIQAKISTDSPTHAMLTTVSDMVLPVQTGGRAPAQ
LSSAQDVIWRPAHAVYMLTTSWEGDVRRLILPCMRPSGCSLKSGTRLPGNCSH

>gi568815579f:54639506_54756112|GENSCAN_predicted_CDS_5|522_bp
gcaggcccttcctggactgaagttaaactcaccctcagtgcctacctgcacccaagaaca
gggctgtcggctgtgcagagacccagcctccaagcccagatccccaccacaagcccatat
ccccaccacaagcccatatctccactccaggccaatatttccaccctaggcctgtatctc
cactccaggcccatatctccactccaggccgatatttccatcataggcccatatcgccaa
tccaggcccatatcgccaatccaggccaagatctccactgactcaccaacacacgccatg
ctgacgaccgtgagcgacatggtgctgccggtgcagacaggcggccgtgccccagctcag
ctcagcagcgcacaggatgttatttggcgccctgcccatgcagtttacatgttgaccaca
tcatgggagggtgacgtacgcaggctcattctaccttgcatgaggcccagtgggtgctcg
ctcaagagcggaacacggcttcctggaaattgttctcactag