GENSCAN 1.0	Date run:  8-Nov-116	Time: 15:51:15

Sequence gi568815593r:172238372_172554352 : 315981 bp : 46.41% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   8663   8733   71  1  2   75   95    97 0.843   9.62
 1.02 Term +  13371  13503  133  0  1   45   46    73 0.559  -3.64
 1.03 PlyA +  13522  13527    6                               1.05

 2.04 PlyA -  14882  14877    6                               1.05
 2.03 Term -  16689  16474  216  0  0   96   48   103 0.515   4.24
 2.02 Intr -  17158  16869  290  2  2   49   89   189 0.843  12.06
 2.01 Init -  45294  45225   70  0  1   88   92   106 0.685  12.21
 2.00 Prom -  49039  49000   40                              -5.46

 3.17 PlyA -  49046  49041    6                               1.05
 3.16 Term -  87009  86905  105  0  0   77   54    90 0.705   2.91
 3.15 Intr - 101545 100064 1482  1  0  118   34  1273 0.394 114.84
 3.14 Intr - 107890 107765  126  1  0   28  105   238 0.966  20.38
 3.13 Intr - 111941 111844   98  0  2   41   60    62 0.320  -1.57
 3.12 Intr - 112218 111992  227  2  2  122   70   194 0.924  18.63
 3.11 Intr - 115634 115487  148  0  1  119   55   239 0.752  22.99
 3.10 Intr - 120506 120402  105  0  0  112   97    60 0.990   9.49
 3.09 Intr - 124498 124364  135  2  0   93   75   241 0.996  23.84
 3.08 Intr - 127644 127471  174  1  0   98   66    25 0.553   1.21
 3.07 Intr - 135444 135419   26  2  2  118   99    22 0.329   3.97
 3.06 Intr - 143756 143665   92  2  2  127   89   152 0.440  17.99
 3.05 Intr - 156268 156192   77  2  2  136  116   128 0.924  19.63
 3.04 Intr - 159747 159679   69  1  0   79   89    26 0.642   0.95
 3.03 Intr - 166624 166514  111  2  0  111   80    25 0.950   4.35
 3.02 Intr - 167981 167906   76  2  1   54   96    90 0.777   5.49
 3.01 Init - 168719 168630   90  2  0   78   34    72 0.324   1.29
 3.00 Prom - 168807 168768   40                              -5.46

 4.00 Prom + 170708 170747   40                              -2.96
 4.01 Init + 173901 173966   66  2  0  111   67    81 0.936   9.40
 4.02 Intr + 177555 177619   65  2  2  102  121     3 0.156   2.52
 4.03 Intr + 184020 184272  253  0  1   76   50   201 0.011  12.54
 4.04 Intr + 184673 184820  148  1  1  130   55    40 0.001   4.71
 4.05 Term + 201800 201903  104  0  2   62   43   173 0.292   8.64
 4.06 PlyA + 202084 202089    6                              -4.73

 5.00 Prom + 202556 202595   40                              -2.06
 5.01 Init + 204310 204368   59  0  2   68   91    81 0.845   7.18
 5.02 Intr + 206448 206549  102  0  0   65   76    50 0.377   0.79
 5.03 Term + 212863 212962  100  1  1  105   38    61 0.049   0.40
 5.04 PlyA + 214476 214481    6                               1.05

 6.00 Prom + 214541 214580   40                              -6.66
 6.01 Init + 215980 216468  489  0  0  103    1   276 0.076  13.60
 6.02 Intr + 217855 218020  166  0  1   71   67    27 0.199  -1.57
 6.03 Intr + 221447 221628  182  0  2  108   49   109 0.748   8.59
 6.04 Intr + 227531 227571   41  1  2  118   28    33 0.063  -2.68
 6.05 Intr + 228202 228238   37  1  1  120   90    15 0.085   3.16
 6.06 Intr + 241090 241233  144  0  0   32   83   114 0.071   5.78
 6.07 Intr + 243037 243093   57  0  0  114  101    -9 0.048   2.08
 6.08 Intr + 245151 245234   84  2  0   87   25   104 0.048   4.02
 6.09 Intr + 252633 252725   93  2  0  106   65    12 0.058   0.86
 6.10 Intr + 254223 254307   85  2  1   92   72    18 0.369  -0.01
 6.11 Intr + 265857 265889   33  1  0  118   81    48 0.267   5.29
 6.12 Intr + 276433 276557  125  2  2   47  110    57 0.085   4.10
 6.13 Term + 301189 301350  162  0  0   50   42    92 0.018  -1.26
 6.14 PlyA + 301560 301565    6                               1.05

 7.00 Prom + 302535 302574   40                              -1.06
 7.01 Init + 304614 304722  109  2  1  112   97    60 0.414   8.54
 7.02 Term + 306818 306861   44  0  2  106   44    20 0.247  -3.28
 7.03 PlyA + 307759 307764    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr - 184125 184045   81  0  0  141  110   187 0.982  26.03
S.002 Intr - 241321 241265   57  1  0  121   97    36 0.815   6.88
S.003 Intr - 243426 243373   54  0  0  115   98     3 0.829   3.18


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815593r:172238372_172554352|GENSCAN_predicted_peptide_1|67_aa
MSHSIRPKIAVLKIRLHAIYKKSLPVLQEMLKVILEAERKDVNEKHKTSQSIKLVKVKFR
IQMVPEV

>gi568815593r:172238372_172554352|GENSCAN_predicted_CDS_1|204_bp
atgagccacagcatccggcccaagattgcagttttaaagattcgactacatgctatctac
aagaaatccctacctgtcttacaagaaatgctaaaggtaattcttgaagctgaaagaaag
gacgtcaatgagaaacacaaaacatctcaaagtataaaactggtgaaagtaaaattcaga
atacagatggttcctgaagtatag

>gi568815593r:172238372_172554352|GENSCAN_predicted_peptide_2|191_aa
MGGCVGAQHDSSGSLNENSEGTGGSPDLGLYFSWAASLTTPLKAKHQSTLEGLKECSCLT
QFLLSKRPVDPVSVSYSSNYMESMKPNKYGVIYSTQLPDEFFQTLEGLWHGIQMEPVDFM
MMAAALSWHRIWSLGILLVIQPVVVQPIPFMYMSHLQEPLMVSLRRRRRKRSSMEEMKNS
SSSMQVPVIES

>gi568815593r:172238372_172554352|GENSCAN_predicted_CDS_2|576_bp
atgggcgggtgtgtgggcgcccagcacgactcctcgggcagcctcaacgagaactcggag
ggcaccggaggcagcccggatctgggcctttatttctcgtgggcggcgtccctaaccaca
cctctcaaagccaaacaccagagcaccctagaaggtttaaaagaatgctcatgtttgacc
cagttcctgttaagcaagaggcccgtggaccctgtctcggtgtcatactcatctaattac
atggaatccatgaagcccaacaagtatggggtcatctactccacacaattgcctgatgag
ttctttcagaccctagaaggcctgtggcatggaatacagatggagccagtggacttcatg
atgatggcagctgccctctcctggcacagaatatggagcctggggatcttgctggtcatc
cagccggtggtggtgcagcccatcccctttatgtacatgagtcacctccaggagcctctc
atggtctccttgaggaggaggaggaggaagaggtcttccatggaggagatgaaaaattcc
agtagtagcatgcaagtacctgtaattgaatcataa

>gi568815593r:172238372_172554352|GENSCAN_predicted_peptide_3|1046_aa
MGSKKQILVILYAKSDISHEVPEAFRDTFMMQMLDKFPMEGGQKDPKQRIIPFLPEQPCG
IGITAPISQMRKIEAQGTYGRLHRWQNWNSDTETQENSRGKEKVPHFQVVTVQKPSKILF
RRSHIRDVAVKRLIPIDEYCKALIQLPPYISQCDEVLQFFETRPEDLNPPKEEHIGKKKS
VLSVKLRHRETHLPGPAHLRAQTEGKLQSWGFEPSGRLYPGVDAGLDSEKSESSDQDTGG
DQTSVDPMVLEQYVVVANYQKQESSEISLSVGQVVDIIEKNESGWWFVSTAEEQGWVPAT
CLEGQDGVQDEFSLQPEEEEKYTVIYPYTARDQDEMNLERGAVVEVIQKNLEGWWKIRYQ
PLPPTVAGYQGKEGWAPASYLKKNSGEPLPPKPGPGSPSHPGALDLDGVSRQQNAVGREK
ELLSSQRDGRFEGRPVPDGDAKQTLCSRRLTSSLILTAAQLLPHPPDKKTEAQKPRPRGL
NLPKPPIPPQVEEEYYTIAEFQTTIPDGISFQAGLKVEVIEKNLSGWWYIQIEDKEGWAP
ATFIDKYKKTSNASRPNFLAPLPHEVTQLRLGEAAALENNTGSEATGPSRPLPDAPHGVM
DSGLPWSKDWKGSKDVLRKASSDMSASAGYEEISDPDMEEKPSLPPRKESIIKSEGELLE
RERERQRTEQLRGPTPKPPGVILPMMPAKHIPPARDSRRPEPKPDKSRLFQLKNDMGLEC
GHKVLAKEVKKPNLRPISKSKTDLPEEKPDATPQNPFLKSRPQVRPKPAPSPKTEPPQGE
DQVDICNLRSKLRPAKSQDKSLLDGEGPQAVGGQDVAFSRSFLPGEGPGRAQDRTGKQDG
LSPKEISCRAPPRPAKTTDPVSKSVPVPLQEAPQQRPVVPPRRPPPPKKTSSSSRPLPEV
RGPQCEGHESRAAPTPGRALLVPPKAKPFLSNSLGGQDDTRGKGSLGPWGTGKIGENREK
AAAASVPNADGLKDSLYVAVADFEGDKDTSSFQEGTVFEVREKNSSGWWFCQDHKNVHLE
SPVEVPLRRIKMRTALGKHVAASMEM

>gi568815593r:172238372_172554352|GENSCAN_predicted_CDS_3|3141_bp
atggggagtaagaagcagatcctcgtgattttgtatgccaaatccgatatttcacatgaa
gtccctgaagctttcagagatacgtttatgatgcagatgttggacaaatttcccatggaa
ggaggacagaaggaccccaagcagcggatcatcccctttctgccagagcagccctgcggc
ataggcattactgcacccatttcacagatgaggaaaattgaggctcagggaacctatggg
cgcttgcacagatggcagaactggaattcagacacagaaacacaggagaattccaggggg
aaggagaaggttccacatttccaagttgtaactgttcagaaaccaagtaagattctcttc
agacgaagccacatccgggacgtggctgtcaaacgcctgataccaattgatgaatactgt
aaggccctcatccagctgcccccctacatctctcagtgtgatgaggtgctgcagttcttt
gagacaagacctgaggacctgaatccccccaaagaggagcacattgggaaaaagaaatct
gttctttctgtcaagctgaggcacagggaaacacacttacctggtccagctcacctgagg
gcccagacagaagggaaactgcaatcctggggttttgagccctcgggcaggctgtatcct
ggggtagatgctggattggattcagagaagagtgagtctagtgaccaggacacagggggt
gaccaaacctcagtggaccccatggtcctggagcagtatgtggtggtagccaactaccag
aagcaggagagttcggagatcagcctcagcgtggggcaggtggtggacatcatcgagaag
aatgagtcaggttggtggttcgtcagcactgccgaggagcaaggctgggtccctgcaacg
tgcctcgaaggccaggatggggtgcaggatgagttttctctgcagcctgaagaagaggag
aagtacacagtcatctacccgtacacagctcgggaccaggatgaaatgaacctggagaga
ggggctgtggtggaggtcatccagaaaaacctggaaggctggtggaagatcaggtaccag
ccgctgccccccacggttgctgggtaccagggcaaagaaggctgggcccccgcctcctac
ctaaagaagaacagtggggagcccttgcccccgaagccaggccctggctcaccctcccac
ccgggtgcccttgacttggatggtgtttcccggcagcagaacgcggtgggcagggagaag
gagctgctcagcagccagagggacgggcggtttgaaggccgcccggtgcccgacggtgac
gccaagcagactctgtgctcaaggcgtctcacatcgtccctcatcctcacagcagcccag
ctgctcccccatcctccagataagaaaacagaggcccagaaaccccggcctcgaggcctc
aacctgccgaagccgcccatcccgccccaagtggaggaagagtattacaccatcgccgaa
ttccagacaaccatcccagacggcatcagcttccaggcaggcctgaaggtcgaggtgatc
gagaaaaacttgagtggctggtggtacattcagattgaagataaggaagggtgggccccg
gccaccttcattgacaagtacaagaagacgagcaacgcgtcgagacccaactttctggct
cccctgccccacgaggtgacccagctccggctgggggaagcagcagcgctggagaacaac
acgggcagcgaagccacgggcccctcccggcccctgcctgacgcaccgcatggtgtcatg
gactcggggttgccatggtctaaagactggaagggcagtaaggatgtcctgaggaaggca
tcttcagacatgtctgcgtcagcaggctacgaggagatctcagaccccgacatggaggag
aagcccagcctccctccgcggaaagaatccatcatcaagtcggagggggagctgctggag
cgggagcgggagcggcagaggacggagcagctccggggccccactcccaagcctccgggc
gtgattttgccgatgatgccagccaaacacatccctccagcccgggacagcaggaggcca
gagcccaaacctgacaaaagcagactgttccagctgaaaaatgacatggggctggagtgt
ggccacaaggtcttggccaaggaagtgaagaagcccaacctccggcccatctccaaatcc
aaaactgacctgccagaggagaagccagatgccactccccagaatcccttcttgaagtcc
agacctcaggttaggccaaaaccagctccttcccccaaaacggagccacctcagggcgaa
gaccaagtcgacatctgcaacctcaggagtaagctcaggcctgccaagtcccaagacaag
tccttgttggatggggagggcccccaggcagtagggggccaagacgtggccttcagccga
agcttcctcccaggagaggggcctggccgcgcccaggacaggacgggcaaacaggatggt
ctcagcccaaaagagatttcctgcagagcccctccgaggccagccaagaccacagatcct
gtgtctaagagcgtgcctgttcctctccaagaggctccccagcagagacctgtggtccca
ccccgcagaccacctcccccaaagaaaacctcttcgtcatccaggccgctcccagaggtc
agaggtccacagtgtgaaggccacgaaagcagggcagctcccaccccaggccgtgctctc
ctcgtccctccaaaagccaaaccttttctctccaactctttggggggccaggatgacacg
cgaggcaaaggcagcctggggccatgggggaccggcaagattggagaaaacagggagaaa
gcagctgcagcctctgtccccaatgccgacggcctgaaggactctttgtatgtggccgtg
gccgactttgaaggagacaaagacaccagcagcttccaggaagggacagtgtttgaagtc
cgggagaagaacagcagtggctggtggttctgccaggatcataagaatgttcacttggag
agccctgtggaagtccctcttagaagaatcaagatgcggacagcacttgggaagcacgtg
gcagcttccatggagatgtga

>gi568815593r:172238372_172554352|GENSCAN_predicted_peptide_4|211_aa
MEVFYILLSNPVATSLLVAIEQVNETCGQMSSKSIRHHYQALLSSPETSNPYLEVKKLAV
APVNGLGGAAGPRDPDDVDLREQQRRWVLTPEGGLPISGTQGEHKTQSQKDVGFSLSSAN
DWLDKLLADRCEVLMKLRMKDHFINQWAVLPTCVTRHGTHRKQYIDNKPGQTEVTIRELS
RVNGAANKSTHYAQGSSIKAVFKEHAVEMAK

>gi568815593r:172238372_172554352|GENSCAN_predicted_CDS_4|636_bp
atggaggtgttctacatcttgctgtccaatccagtggccactagcctcctggtagctatt
gagcaggtgaatgagacgtgtggtcagatgtcaagtaagagcatcaggcatcactatcag
gcccttctaagctcaccagagacctcaaatccttacctggaggtcaaaaaacttgctgta
gcgccggtaaatggcctcggtggagccgctggaccacgtgacccggatgatgtagacctg
cgggagcaacagaggagatgggtgttaacaccagaaggtggtctcccaatctctgggacc
cagggggagcacaagactcagagtcagaaagacgtgggtttcagccttagctctgccaat
gactggctggacaagttgcttgctgatagatgtgaggtgctgatgaaattaaggatgaag
gaccattttataaaccagtgggctgtgcttccaacctgtgtcacacgtcacggcacgcac
agaaaacaatacattgataacaagcccgggcaaactgaggtgactattagagagctgtcc
agagtgaatggagccgccaacaagagcacccactacgcgcaaggcagtagcatcaaagct
gtcttcaaggagcacgcggtcgagatggcaaagtag

>gi568815593r:172238372_172554352|GENSCAN_predicted_peptide_5|86_aa
MHITSQINDDDDDGKDNNNSDCLWPRALASAFVCCTGAMAFLGGDHAFSPVVLRQVSDEQ
VVAEMAANGERGSGKLGGVVKRTLKN

>gi568815593r:172238372_172554352|GENSCAN_predicted_CDS_5|261_bp
atgcacatcactagtcagataaatgatgatgatgatgatggtaaagataataataacagt
gactgcctctggccccgagccctggcctcagccttcgtgtgctgtactggagctatggcc
ttcctggggggggaccatgccttctctcctgtggttctcaggcaagtgagtgatgagcag
gtagtggccgagatggctgcaaatggggagaggggtagtgggaaattagggggcgtagtg
aagaggactctcaaaaactga

>gi568815593r:172238372_172554352|GENSCAN_predicted_peptide_6|565_aa
MAAPPPAAGRARVRVARGAGSAGGAPPRAGNLELSAIAAGAEHEPPPPPPPPFARRALQP
GPAAAARPRPAPRTAPRTAPRTAPRAAGPPPLKGPAPTPAHRARTPPATSGPRPAFVPVL
SRRAGGGDWTDPVARSLIDVSIHSSTLAPAAAIHRQFGEPDTRDSDSLAVASPGYYAILG
ASLAPPTPVYIDPLLNCLHGPSLRVASVRCQDPHSCNSFSGKKLGLERDSLRDCCLIGWH
CGVVITNVATLSNAQWPGTRGPEKQTTGYKKAGLMAKFQIKKGVAFKTTARRKYRQPAQV
RAKSEGSRLEAVWHLKTLELLLSGTHALPIHLPSAPGAPADAEDAGNDSAPALIGPSSCR
KTSSGLPLLYTMVVGDDSPHDDKMAATAPDKSAYDIQRGVVCNETNHPASLGGLGEGMRQ
DVKRPTRWLSLVRSFQISWSPSLLKNHWRNEDSQPVEGKGWGCPEEKQTQGRFTGVTFTQ
YITSTFQQEITRHTKKQKHILKRLDKHQDRSQGIDSHLRNRNPHKTLNLIKHKPSDYSSG
NVAGVGEELHSNSSILAIDTKSLKL

>gi568815593r:172238372_172554352|GENSCAN_predicted_CDS_6|1698_bp
atggccgctcctccgcccgcagcgggccgagcgcgggtgcgggtggcgcggggtgcaggg
agcgctgggggcgcgccgccgcgggcagggaacctggagctgagcgcaatcgcagccggg
gccgagcacgagccgccgccgccaccgccgccgcccttcgctcggcgcgcactccagccg
ggcccagccgccgccgcccgcccccggcccgccccccgcaccgccccccgcaccgccccc
cgcaccgccccccgcgccgccggcccgccccccttaaagggcccggccccgacccccgcc
caccgcgcgcgaaccccgccggccacgtccggcccccgcccggcctttgtcccggtgctg
agccgccgcgccgggggaggggactggactgaccccgtcgcccgttcactgattgacgta
tcgattcattccagcactctcgctccggcagccgccatccaccgccagtttggagagccg
gacacccgggacagtgacagtcttgctgttgcaagccctgggtactacgccatcctcggt
gcttccttagccccgcccacacccgtatacattgaccctttactaaactgtcttcatgga
cccagcttgagggtggcatctgttcggtgccaggaccctcactcatgtaattccttctct
gggaagaagctgggcttggaaagagattccctccgtgactgctgtctgattggctggcat
tgcggggtggtcataactaatgtggccacgctttctaatgctcagtggcccggcacacgt
ggtcctgagaaacagaccacaggctataagaaagcaggccttatggcaaaattccagatc
aaaaaaggggtggccttcaagacaactgctcgtagaaagtacaggcagccagctcaggtc
cgagcaaaaagtgagggaagccgtctggaggcagtgtggcacctgaagacgctggagctg
ctgctgtcagggacacacgccctgcccattcatctgccttctgcgccgggagcccccgca
gatgcggaagatgcagggaatgattcagccccagccttaataggaccgtctagttgcagg
aaaacaagctcagggctcccactactctacacgatggttgttggtgatgactcccctcat
gatgacaaaatggctgccacagctccagacaaatctgcatatgacatccagagaggggtg
gtgtgtaatgagaccaaccaccctgcttctctagggggcttgggggaaggaatgagacaa
gatgtgaagcgtccaacacggtggctgtccctggtcagatcattccagatttcctggtct
ccttccctcctgaagaaccactggaggaacgaggactcccagcctgtggaaggaaagggc
tggggctgcccagaggagaagcagacgcaaggccgatttactggagttacttttacccag
tacatcacatccacctttcaacaggaaattacaagacatactaaaaagcaaaaacacatt
ttgaagagactggacaaacatcaggacaggagtcagggaatagacagccatctacgaaat
aggaaccctcataaaacactgaatctcataaaacacaaaccttcagactatagcagtggc
aatgttgctggggttggtgaagagctgcactccaattcaagcattttggcaatagatacc
aagagccttaaattgtga

>gi568815593r:172238372_172554352|GENSCAN_predicted_peptide_7|50_aa
MQRAGPQRTSPHMPCGGCETLSLRSELKAGSCQQLQESLSVVTEALILRT

>gi568815593r:172238372_172554352|GENSCAN_predicted_CDS_7|153_bp
atgcagcgagcaggtccccagagaacctctccccacatgccgtgtgggggttgcgagacc
ctgtccctgcggagtgagctgaaggccgggagctgccagcagctgcaagaaagcctctct
gtggttacagaggctctcatcttgaggacctag