GENSCAN 1.0	Date run:  6-Nov-116	Time: 20:00:32

Sequence gi568815578f:43414545_43641125 : 226581 bp : 46.38% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +  12806  12906  101  1  2   90   53    64 0.161   2.01
 1.02 Intr +  15197  15290   94  2  1   79  113   -19 0.072  -0.33
 1.03 Term +  26167  26289  123  0  0   86   54   154 0.948  10.18
 1.04 PlyA +  29025  29030    6                               1.05

 2.00 Prom +  36474  36513   40                              -6.46
 2.01 Init +  43490  43596  107  1  2   91   92   141 0.959  14.49
 2.02 Intr +  43817  43965  149  2  2   90   73   368 0.929  35.38
 2.03 Intr +  45227  45351  125  0  2   39   95    56 0.995   1.70
 2.04 Term +  45489  45701  213  2  0   98   32   178 0.324  10.43
 2.05 PlyA +  45741  45746    6                               1.05

 3.05 PlyA -  45863  45858    6                              -1.75
 3.04 Term -  46077  45950  128  1  2   32   45   164 0.316   4.94
 3.03 Intr -  46325  46125  201  0  0   92   27   204 0.169  13.96
 3.02 Intr -  72006  71981   26  2  2   78   76    28 0.063  -1.73
 3.01 Init -  79498  79437   62  1  2   45  103    73 0.545   4.32
 3.00 Prom -  80068  80029   40                              -2.06

 4.00 Prom +  80785  80824   40                              -2.86
 4.01 Init +  98942  99095  154  1  1   99  109    67 0.277  10.30
 4.02 Intr +  99294  99517  224  1  2   66   60   153 0.786   8.15
 4.03 Intr + 100091 100232  142  1  1   29   57   163 0.806   7.23
 4.04 Intr + 100465 100615  151  2  1   57   91   107 0.997   7.12
 4.05 Intr + 100748 100871  124  2  1   67   58   152 0.996  10.69
 4.06 Intr + 101549 101633   85  1  1   12   68    64 0.089  -3.81
 4.07 Intr + 114113 114201   89  0  2   91   86    95 0.983   9.29
 4.08 Intr + 114720 114824  105  2  0   48   83   166 0.827  12.51
 4.09 Intr + 115740 115875  136  2  1   47  116   169 0.998  15.74
 4.10 Intr + 116254 116345   92  2  2  -36   94   123 0.974   0.21
 4.11 Intr + 118229 118380  152  1  2   99   27   293 0.797  23.26
 4.12 Intr + 119721 119850  130  0  1   52   34   226 0.402  14.30
 4.13 Intr + 120284 120398  115  1  1   76   74   105 0.998   7.92
 4.14 Intr + 121293 121392  100  1  1  116  117   -44 0.598   0.47
 4.15 Intr + 121553 121750  198  2  0  102   72   134 0.833  11.67
 4.16 Intr + 121865 121914   50  2  2   75   89    52 0.990   2.32
 4.17 Intr + 125607 125764  158  1  2   91   78   141 0.976  13.13
 4.18 Intr + 126209 126271   63  1  0   61   94    67 0.842   3.51
 4.19 Intr + 129993 130067   75  2  0   55   72    55 0.468   0.31
 4.20 Intr + 133567 133697  131  0  2   77   -4   202 0.277   9.39
 4.21 Intr + 137170 137259   90  1  0   36   34   125 0.141   1.01
 4.22 Intr + 152532 152573   42  0  0   63   87    69 0.113   1.66
 4.23 Intr + 153121 153178   58  1  1  116  113   177 0.774  21.89
 4.24 Intr + 153372 153455   84  2  0   76   66   118 0.826   8.42
 4.25 Intr + 154841 154972  132  1  0   82   90   294 0.878  29.84
 4.26 Intr + 156073 156185  113  0  2  120   94   199 0.980  22.88
 4.27 Intr + 156480 156516   37  0  1  102   77    28 0.956   1.36
 4.28 Intr + 157507 157593   87  0  0   85   99    99 0.985  10.87
 4.29 Intr + 160365 160460   96  2  0   65  105   121 0.999  11.71
 4.30 Intr + 161680 161835  156  0  0  103   28   217 0.905  17.41
 4.31 Intr + 165428 165517   90  1  0   78   83    48 0.836   3.49
 4.32 Intr + 170046 170063   18  2  0  105   70    37 0.503   0.41
 4.33 Term + 170308 170472  165  0  0   60   43   182 0.993   8.82
 4.34 PlyA + 173101 173106    6                               1.05

 5.00 Prom + 179463 179502   40                              -0.76
 5.01 Init + 180155 180273  119  1  2  105   47   153 0.747  12.57
 5.02 Intr + 199306 199432  127  1  1   99   87    10 0.193   2.68
 5.03 Intr + 204396 204482   87  2  0   72  103    49 0.947   4.97
 5.04 Intr + 206313 206381   69  2  0   81   59    44 0.437   0.18
 5.05 Term + 209347 209523  177  0  0   75   52   287 0.815  21.49
 5.06 PlyA + 210591 210596    6                              -1.75

 6.00 Prom + 210664 210703   40                              -5.56
 6.01 Init + 210900 210905    6  2  0  104  101    10 0.098   4.21
 6.02 Intr + 222601 222709  109  0  1  132   84    62 0.738  10.06

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Term +  35407  35552  146  2  2  128   41    86 0.811   5.97
S.002 Intr + 152524 152573   50  0  2   63   87    76 0.833   2.48


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815578f:43414545_43641125|GENSCAN_predicted_peptide_1|105_aa
SNLRECQHRHPPLAKAIILDIITLSYSHIQSLTSIALGTITLYFNLYQWSLQYTVPLGFK
LPSQKEKFANSWSTPCQALTMHHHTYFSTRLWKVSYYDVHATDEK

>gi568815578f:43414545_43641125|GENSCAN_predicted_CDS_1|318_bp
tccaatctcagagaatgtcagcatcgccacccaccacttgctaaagccataatcttggat
atcattactctctcctactcccacatccagtcgctcaccagcatagcactgggcacaata
actctttattttaatctttatcagtggagtctacagtacactgttcccctcggcttcaag
ctcccaagccagaaggaaaagtttgccaactcctggtccacaccgtgccaggcactgacg
atgcaccaccacacttacttctcaactcgactctggaaggtgtcctactacgatgtccat
gctacagatgagaaatga

>gi568815578f:43414545_43641125|GENSCAN_predicted_peptide_2|197_aa
MPRVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKEL
CGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSR
CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE
DKPRTSHRRSYSGSRSR

>gi568815578f:43414545_43641125|GENSCAN_predicted_CDS_2|594_bp
atgccgcgcgtctacataggacgcctgagctacaacgtccgggagaaggacatccagcgc
tttttcagtggctatggccgcctcctcgaagtagacctcaaaaatgggtacggcttcgtg
gagttcgaggactcccgcgacgccgacgacgccgtttacgagctgaacggcaaggagctc
tgcggcgagcgcgtgatcgtagagcacgcccggggcccgcgtcgcgatcgcgacggctac
agctacggaagccgcagtggtggaggtggatacagcagtcggagaacatctggcagagac
aaatacggaccacctgttcgtacagaatacaggcttattgtagaaaatctttctagtcgg
tgcagttggcaagatttaaaggattttatgcgacaagcaggtgaagtaacctatgcggat
gcccacaaggaacgaacaaatgagggtgtaattgagtttcgctcctactctgacatgaag
cgtgctttggacaaactggatggcacagaaataaatggcagaaatattaggcttattgaa
gataagccacgcacaagccataggcgatcttactctggaagcagatccaggtaa

>gi568815578f:43414545_43641125|GENSCAN_predicted_peptide_3|138_aa
MRMFLKCVPQKLVAAQEAQLMCCGRDLVGGDRDRDLLRDFSYSSLDLLRECEWEPRSDLG
LDLLFDLDFLPFDRERDRPLLRDLELDKERPIFSILMTQHNVIYRERLFEILRDLLRLLL
RLLLRDRLLDRDLLGEKQ

>gi568815578f:43414545_43641125|GENSCAN_predicted_CDS_3|417_bp
atgaggatgtttctgaagtgtgtgccccagaagctcgtggcagctcaggaggctcagctc
atgtgttgtgggagggacctggtgggaggggatcgggaccgagacctgcttcgagatttc
tcatactcatccttagatctgcttcgagaatgtgaatgggagccccgatcagacttgggc
ttagatttgctctttgatctagatttcctgccttttgatcgagaacgtgatcgacctttg
ctccgcgacctggaactggacaaggaaagaccgattttctcaatacttatgactcaacac
aacgttatttaccgggagcgactttttgagatacttcgagatctactgcggctgctcctg
cgactcctacttcgtgaccgtcttctagatcgagacctattaggagaaaaacaatga

>gi568815578f:43414545_43641125|GENSCAN_predicted_peptide_4|1213_aa
MEGHAGMEGHAEMEMLRTLKGPSTGEVSMHLVAGDSPGSGPHLPATAFIIPASSATLGLP
SSALDVSCFPREPIHVGAPEQVAGCEPVSATVLPQLSAGPASSSTSTVRLLEWTEAAAPP
PGGGLRFRISEYKPLNMAGVEQPPSPELRQEGVTEYEDGGAPAGDGEAGPQQAEDHPQNP
PEDPNQDPPEDDSTCQCQACGPHQAAGPDLGSSNDGCPQLFQERSVIVENSSGSTSASEL
LKPMKKRKRREYQSPSEEESEPEAMEKQEEGKDPEGQPTASTPESEEWSSSQPATGEKKE
CWSWESYLEEQKAITAPVSLFQDSQAVTHNKNGFKLGMKLEGIDPQHPSMYFILTVAEVC
GYRLRLHFDGYSECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYLRSTR
AQAAPKHLFVSQSHSPPPLGFQVGMKLEAVDRMNPSLVCVASVTDVVDSRFLVHFDNWDD
TYDYWQLSPLQRPPHSFLVNMKLEAVDRRNPALIRVASVEDVEDHRIKIHFDGWSHGYDF
WIDADHPDIHPAGWCSKTGHPLQPPLGPREPSSASPGGCPPLSYRSLPHTRTSKYSFHHR
KCPTPGCDGSGHVTGKFTAHHCLSGCPLAERNQSRLKAELSDSEASARKKNLSGFSPRKK
PRHHGRIGRPPKYRKIPQEDFQTLTPDVVHQSLFMSALSAHPDRSLSVCWEQHCKLLPGV
AGISASTVAKWTIDEVFGFVQTLTGCEDQARLFKDESQTARPQTLAFALKNLEPGLWQLP
WMIDGEAFLLLTQADIVKIMSVKLGPALKIYNAILMFKNADDTLKSSNHGAVRERILSTP
QLGTYLTEIGAMIDWANGNINLGPSANPNAQPTDFDFLKVIGKGNYGKVLLAKRKSDGAF
YAVKVLQKKSILKKKEQSHIMAERSVLLKNVRHPFLVGLRYSFQTPEKLYFVLDYVNGGE
LFFHLQRERRFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDCQGHVVLTDFGL
CKEGVEPEDTTSTFCGTPEYLAPEVLRKEPYDRAVDWWCLGAVLYEMLHGLPPFYSQDVS
QMYENILHQPLQIPGGRTVAACDLLQSLLHKDQRQRLGSKADFLEIKNHVFFSPINWDDL
YHKRLTPPFNPNVRHEQYLTGPADLKHFDPEFTQEAVSKSIGCTPDTVASSSGASSAFLG
FSYAPEDDDILDC

>gi568815578f:43414545_43641125|GENSCAN_predicted_CDS_4|3642_bp
atggaggggcatgctgggatggaggggcatgctgaaatggagatgctgaggacactgaag
gggccttccacaggggaggtcagcatgcacttggtggccggagacagccccggttctggt
cctcacctgcccgcaactgccttcatcattccagccagttcggccaccctcggcctgccc
agcagtgccctggatgtgtcttgctttccccgggagccaatccatgtgggtgccccggag
caagtggccggctgcgaaccagtttctgccaccgtcctgccgcagcttagcgccgggccg
gccagctccagcaccagcacagtgcggcttctggaatggacagaggccgcggccccgccc
ccagggggcggcctgcggttccggataagcgagtataagccgctgaacatggcgggagtg
gagcagcccccgagccccgagctgcggcaggaaggcgtgaccgaatacgaagatggcggg
gccccggcgggagatggcgaggcgggcccccaacaggcggaggaccacccccagaatcct
ccagaagatcccaatcaggaccccccagaggatgatagcacctgtcagtgccaggcgtgc
gggcctcaccaagccgcgggtccagatcttggttcctctaatgatggctgccctcagctg
ttccaggagcggtcagtcatagtggagaactcctcaggctctaccagcgcttctgagctc
ctcaaacccatgaagaagaggaagcgcagggaataccagagcccatcagaggaggagtcg
gagccagaggccatggagaagcaagaagaaggaaaggacccagagggacaacccactgct
agcaccccagagagtgaggagtggagcagcagccagcctgcaacaggtgagaagaaggaa
tgctggtcgtgggagtcctacctagaggagcagaaggccattactgctccagtcagcctc
ttccaggactcccaggcagtcactcacaacaagaatggcttcaaactgggcatgaagttg
gaaggcattgaccctcaacacccgtccatgtacttcatcctcaccgtggctgaggtatgt
ggctatcgcctacgcctgcactttgatgggtattctgagtgccatgacttctgggtcaat
gccaactcccctgacattcaccctgctggctggttcgagaagacgggccacaagctgcag
cctcccaaaggttacaaggaggaggagttcagctggagccagtacctgcgcagcacaaga
gctcaggctgcccccaagcacctgtttgtgagccagagccacagtcccccacccctgggc
ttccaggtgggcatgaagctggaggctgttgaccgcatgaacccgtcccttgtctgcgtg
gccagtgtgaccgatgtggtggacagccgcttcctggtgcactttgacaactgggatgat
acttatgactactggcagctgtcccctctgcagcgaccccctcacagcttcctggtcaat
atgaagctggaggctgtggaccgcaggaacccagccctgattcgcgtggccagcgtggag
gatgtggaggaccatcggataaagatccactttgatggctggagtcatggctatgatttc
tggatcgacgctgaccacccagacatccaccctgccggctggtgctccaagacaggacat
cccctgcagcctcctctcggacccagagagcccagctctgcctcccctgggggctgtccc
cctctcagctataggagcctgccccacactaggacctccaaatacagctttcaccaccgg
aagtgccccactcctggttgcgacggctctggccatgtcacaggcaagttcacagctcac
cattgcctctcaggctgcccactggctgagaggaaccagagccggctgaaagcggagctg
tctgactcggaggcctcagcccgcaagaagaacctctcaggcttctccccaaggaagaag
cctcgccatcacggccgaattggacgccctccgaagtatcgaaagattccgcaggaagat
ttccagaccctcacgcccgatgtcgtgcaccagtccctcttcatgtcagccctgtcggcc
caccctgaccgctcactctcagtgtgctgggagcagcactgcaagctcctgccaggagta
gcgggcatctcagcctcgacagtcgccaagtggaccatcgatgaggtcttcggctttgtt
cagaccctgacaggttgtgaggaccaagcacgcctcttcaaagacgagtctcagactgcc
agaccacagactctggcctttgctttgaagaacctggaacctgggctttggcagttaccg
tggatgattgacggcgaggccttccttttgctgacacaggcggacattgtgaagatcatg
agcgtcaagctgggcccagccttgaagatctataacgccattctcatgttcaaaaacgct
gatgacaccttaaaaagctccaaccatggagctgtccgagagcgcatcctctccacacca
caactgggaacctacctgaccgagattggtgccatgatagactgggccaatgggaacatc
aacctggggccttcagccaacccaaatgcccagcccacggacttcgacttcctcaaagtc
atcggcaaagggaactacgggaaggtcctactggccaagcgcaagtctgatggggcgttc
tatgcagtgaaggtactacagaaaaagtccatcttaaagaagaaagagcagagccacatc
atggcagagcgcagtgtgcttctgaagaacgtgcggcaccccttcctcgtgggcctgcgc
tactccttccagacacctgagaagctctacttcgtgctcgactatgtcaacgggggagag
ctcttcttccacctgcagcgggagcgccggttcctggagccccgggccaggttctacgct
gctgaggtggccagcgccattggctacctgcactccctcaacatcatttacagggatctg
aaaccagagaacattctcttggactgccagggacacgtggtgctgacggattttggcctc
tgcaaggaaggtgtagagcctgaagacaccacatccacattctgtggtacccctgagtac
ttggcacctgaagtgcttcggaaagagccttatgatcgagcagtggactggtggtgcttg
ggggcagtcctctacgagatgctccatggcctgccgcccttctacagccaagatgtatcc
cagatgtatgagaacattctgcaccagccgctacagatccccggaggccggacagtggcc
gcctgtgacctcctgcaaagccttctccacaaggaccagaggcagcggctgggctccaaa
gcagactttcttgagattaagaaccatgtattcttcagccccataaactgggatgacctg
taccacaagaggctaactccacccttcaacccaaatgtgcgccacgaacagtacctgaca
ggacctgctgacttgaagcattttgacccagagttcacccaggaagctgtgtccaagtcc
attggctgtacccctgacactgtggccagcagctctggggcctcaagtgcattcctggga
ttttcttatgcgccagaggatgatgacatcttggattgctag

>gi568815578f:43414545_43641125|GENSCAN_predicted_peptide_5|192_aa
MEKELRSTILFNAYKKEIFTTNNGYKSMQKKLRSNWKIQRALTFVYPFGATLSVMKPAVA
VLSTGSVCFPLNRPILAFYHSKNQGGKLAVLGSCHMFSDQYLDKEENSKIMDVVFQWLTT
GDIHLNQIDAEDPEISDYMMLPYTATLSKRNRECLQESDEIPRDFTTLFDLSIFQLDTTS
FHSVIESVPVGL

>gi568815578f:43414545_43641125|GENSCAN_predicted_CDS_5|579_bp
atggagaaagagctgcggagcaccattcttttcaatgcctacaaaaaggagatatttacc
accaacaatggctacaaatccatgcagaaaaaacttcggagtaattggaagattcagagg
gctctcacctttgtgtatccttttggtgccacattgagtgtcatgaaaccagcagtggcg
gttctgtctacaggttctgtctgcttcccacttaacagacccattttggctttctatcac
tcaaagaaccaaggtgggaagctggcagtgcttggttcatgtcacatgttcagtgatcaa
tatttggacaaagaagaaaacagcaaaatcatggatgttgttttccagtggctcacgaca
ggagacatccacctaaaccagattgatgctgaggacccagagatttctgactacatgatg
ctgccctacacagccaccctatcaaagcggaatcgagagtgtctccaggagagtgatgag
atcccaagggactttaccaccctcttcgacctgtccatcttccagctggataccacctcc
ttccacagcgtcatcgagtcagtacctgtgggcctctga

>gi568815578f:43414545_43641125|GENSCAN_predicted_peptide_6|39_aa
MAVFPPSFRELPPPPLELFDLDETFSSEKARLAQITNKX

>gi568815578f:43414545_43641125|GENSCAN_predicted_CDS_6|117_bp
atggcggtttttcctcccagtttccgggagttaccacctcctcctctggagctatttgat
ttagatgaaacgttctcctctgagaaggcacggctggctcagattaccaataagtnn