GENSCAN 1.0	Date run:  5-Nov-116	Time: 23:06:10

Sequence gi568815592r:154059831_154365947 : 306117 bp : 39.81% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +  11341  11412   72  0  0   66  100    75 0.729   7.62
 1.02 Term +  23709  23825  117  2  0   29   44   118 0.292  -0.94
 1.03 PlyA +  24386  24391    6                               1.05

 2.00 Prom +  28157  28196   40                              -5.85
 2.01 Init +  30006  30348  343  2  1   89  113   283 0.012  28.34
 2.02 Intr +  31122  31642  521  1  2  112  101   441 0.803  39.54
 2.03 Intr +  46617  46650   34  2  1   76  107    -3 0.003  -2.72
 2.04 Intr +  58853  59068  216  0  0  136  106    25 0.090   6.65
 2.05 Intr +  75788  75861   74  0  2   82   77    40 0.278   0.51
 2.06 Term +  76762  76956  195  0  0   54   49   153 0.674   4.43
 2.07 PlyA +  77553  77558    6                               1.05

 3.03 PlyA -  77617  77612    6                               1.05
 3.02 Term - 100210  99998  213  1  0   80   53   293 0.997  21.25
 3.01 Init - 102884 102783  102  2  0   71   83    70 0.366   5.09
 3.00 Prom - 104421 104382   40                              -1.85

 4.03 PlyA - 107051 107046    6                               1.05
 4.02 Term - 108283 107877  407  2  2   78   47   272 0.669  16.46
 4.01 Init - 108637 108493  145  1  1   92   11    28 0.204  -4.17
 4.00 Prom - 108956 108917   40                              -8.75

 5.00 Prom + 111278 111317   40                              -6.55
 5.01 Init + 113375 113520  146  1  2   77   98   129 0.869  12.44
 5.02 Intr + 113882 114096  215  2  2  -16   53    82 0.110  -8.26
 5.03 Term + 115679 116721 1043  0  2   43   48   331 0.287  15.90
 5.04 PlyA + 116753 116758    6                               1.05

 6.09 PlyA - 118020 118015    6                               1.05
 6.08 Term - 120780 120644  137  1  2   21   42   116 0.163  -2.50
 6.07 Intr - 121911 121837   75  1  0   80   39    72 0.121   0.07
 6.06 Intr - 140095 139838  258  2  0   53   92   189 0.933  12.31
 6.05 Intr - 147096 146973  124  0  1   76   43    97 0.561   3.24
 6.04 Intr - 153025 152940   86  2  2   86   76   104 0.726   7.62
 6.03 Intr - 154446 154388   59  2  2   62   95    68 0.814   2.51
 6.02 Intr - 163413 163340   74  0  2   65   92    95 0.583   4.89
 6.01 Init - 186919 186761  159  1  0   74  101    71 0.383   6.87
 6.00 Prom - 208102 208063   40                              -4.95

 7.00 Prom + 211226 211265   40                              -6.25
 7.01 Init + 213350 213515  166  1  1   36   57   123 0.340   3.84
 7.02 Term + 218407 218639  233  2  2   75   42   179 0.933   7.65
 7.03 PlyA + 219295 219300    6                               1.05

 8.05 PlyA - 219662 219657    6                               1.05
 8.04 Term - 228287 228201   87  2  0  101   47    49 0.048  -1.22
 8.03 Intr - 235716 235658   59  1  2   71   85    29 0.014  -1.42
 8.02 Intr - 245908 245867   42  2  0   96   98    44 0.367   3.49
 8.01 Init - 251507 251411   97  2  1   58   88    90 0.746   6.52
 8.00 Prom - 280404 280365   40                              -4.65

 9.00 Prom + 283274 283313   40                              -4.45
 9.01 Sngl + 284443 284847  405  0  0   29   52   280 0.443  14.53
 9.02 PlyA + 286466 286471    6                               1.05

10.02 PlyA - 289535 289530    6                               1.05
10.01 Sngl - 294841 294536  306  1  0   55   43   364 0.598  24.22
10.00 Prom - 297830 297791   40                              -9.65

11.00 Prom + 298953 298992   40                              -4.65
11.01 Init + 302305 302419  115  0  1   50  103   118 0.845   9.92
11.02 Term + 303530 303642  113  0  2   97   29    77 0.758   0.44
11.03 PlyA + 305521 305526    6                               1.05


Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr +  29996  30348  353  2  2  126  113   302 0.988  30.54
S.002 Init - 141288 141234   55  0  1   92   70    46 0.807   4.70


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815592r:154059831_154365947|GENSCAN_predicted_peptide_1|62_aa
MVKIQLKAQCVVIAAEGRKQLIKKILMVCHRGTRRKKKAEKIGRGQKSERMWRERVTCYQ
ED

>gi568815592r:154059831_154365947|GENSCAN_predicted_CDS_1|189_bp
atggtgaagatccagctaaaggcacagtgtgtagtcatagctgctgaaggaaggaagcag
ctcattaaaaagatactcatggtttgtcatcgggggacccgaaggaagaagaaagcagag
aagattgggagaggacaaaagagcgagaggatgtggagagaaagggtgacatgctaccaa
gaagactga

>gi568815592r:154059831_154365947|GENSCAN_predicted_peptide_2|460_aa
MKTATNIYIFNLALADALATSTLPFQSVNYLMGTWPFGTILCKIVISIDYYNMFTSIFTL
CTMSVDRYIAVCHPVKALDFRTPRNAKIINVCNWILSSAIGLPVMFMATTKYRQGSIDCT
LTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRMLSGSKEKDRNLRRI
TRMVLVVVAVFIVCWTPIHIYVIIKALVTIPETTFQTVSWHFCIALGYTNSCLNPVLYAF
LDENFKRCFREFCIPTSSNIEQQNSTRIRQNTRDHPSTANTVDRTNHQTLPSSKAGKLYA
RKSGSRNCSVALTGSHAIPTFTKLRSHHVCGSRLLQECVGGSNSLGKCLLLGHPTSFLSG
HSALHIRGTAKMAGSLANLKRLYKRLGPAMVSNFSKPLRLVPGPSSCTGAASPQTVPKTV
SEIQVQQKYTSPLLQIHGESGENWQLLSMTCPYDVDGAGI

>gi568815592r:154059831_154365947|GENSCAN_predicted_CDS_2|1383_bp
atgaagactgccaccaacatctacattttcaaccttgctctggcagatgccttagccacc
agtaccctgcccttccagagtgtgaattacctaatgggaacatggccatttggaaccatc
ctttgcaagatagtgatctccatagattactataacatgttcaccagcatattcaccctc
tgcaccatgagtgttgatcgatacattgcagtctgccaccctgtcaaggccttagatttc
cgtactccccgaaatgccaaaattatcaatgtctgcaactggatcctctcttcagccatt
ggtcttcctgtaatgttcatggctacaacaaaatacaggcaaggttccatagattgtaca
ctaacattctctcatccaacctggtactgggaaaacctgctgaagatctgtgttttcatc
ttcgccttcattatgccagtgctcatcattaccgtgtgctatggactgatgatcttgcgc
ctcaagagtgtccgcatgctctctggctccaaagaaaaggacaggaatcttcgaaggatc
accaggatggtgctggtggtggtggctgtgttcatcgtctgctggactcccattcacatt
tacgtcatcattaaagccttggttacaatcccagaaactacgttccagactgtttcttgg
cacttctgcattgctctaggttacacaaacagctgcctcaacccagtcctttatgcattt
ctggatgaaaacttcaaacgatgcttcagagagttctgtatcccaacctcttccaacatt
gagcaacaaaactccactcgaattcgtcagaacactagagaccacccctccacggccaat
acagtggatagaactaatcatcagaccttacctagcagtaaagcaggcaagttgtacgct
agaaaatctggaagcagaaactgctccgttgccctaacagggtctcatgccattccgacc
ttcaccaagcttagaagccaccatgtatgtggaagcaggttgcttcaagaatgtgtagga
ggctctaattctctaggaaagtgcctgcttttaggtcatccaacctctttcctctctggc
cactctgctctgcacattagagggacagccaaaatggcaggctccctggccaacttgaaa
aggctatataaaaggcttggtccagccatggtgtccaacttctccaagcccctccgcttg
gttcctgggccctcttcctgcactggcgcagcatccccacagacagtgcccaagacagtg
tctgaaattcaggtacaacaaaaatatacatctcctttacttcaaatacatggggagagt
ggtgaaaactggcagctgctttccatgacctgcccatatgatgtggatggagctgggatt
tga

>gi568815592r:154059831_154365947|GENSCAN_predicted_peptide_3|104_aa
MNIDRAENRIQAGALEHSSEKRWRDKEESATKVGCKEHDLAMINQLLDDPKLTARKYREW
KVMNTLLIQDIYQQQRASPAPDDTDDTPQELKKSPSSPSVENSI

>gi568815592r:154059831_154365947|GENSCAN_predicted_CDS_3|315_bp
atgaacatagatagagcagagaacaggatacaagctggggctttagaacactccagtgag
aagaggtggcgtgacaaggaggaatcagcaactaaggtgggatgtaaagaacatgatctg
gccatgattaaccagttgctggatgacccgaagctgacagccaggaaatacagagagtgg
aaagtcatgaacaccctgctgatccaggacatctatcagcagcagcgggcttcgcctgcc
cctgatgacactgatgacaccccccaggaactcaagaaatcaccttcttctccctctgtt
gaaaattccatttga

>gi568815592r:154059831_154365947|GENSCAN_predicted_peptide_4|183_aa
MTDTLINRGSLDTETCMQGTPHVNIGVILPQTKKPLEARREAWNNSFPEETKVSEDDEME
KLYKSLEQASLSPLGDRRPSTKKELRKSFVKRCKNPSINEKLHKIRTLNSTLKVTKFQIV
DELYGCGARNGWFCREILANHSMFVWLQGRAVKVNITFIGQDDLDVLKALGHSHSSAQGS
FSQ

>gi568815592r:154059831_154365947|GENSCAN_predicted_CDS_4|552_bp
atgactgataccctcataaatagggggagtttggacacagagacatgcatgcagggaaca
ccccatgtgaatattggagttatactgccacaaaccaaaaaaccacttgaagccaggaga
gaggcttggaataactccttccctgaagagacaaaagtgtctgaagatgatgaaatggag
aagctgtacaaatcattagagcaagctagtctatctcctcttggggaccgacgaccttcg
actaaaaaggagttgagaaaatcctttgttaagcggtgtaaaaatccatctataaacgag
aaactccacaaaatccgaacattgaatagcacattaaaggtaacaaaatttcaaattgtg
gatgaactctatggatgtggggcaaggaacggctggttctgcagagagattcttgctaat
cacagcatgtttgtgtggttgcagggaagggctgtaaaagtaaatataacctttataggg
caagatgatcttgacgttcttaaagcactaggacattcacacagtagcgcccaaggcagt
ttttcacaatag

>gi568815592r:154059831_154365947|GENSCAN_predicted_peptide_5|467_aa
MGRNQSGKAENSKNQNTSSPPKEHNSSPAREQNWMENEFDELTEVGFRSDGENGTKLENT
LQDIIQENFPNLARQVNIQIQEIQRTPQRYSLRRATPRHITVRFIKVEMKEKMLRAVREK
EIQTTIREYYKHLYTNKLENLEETEKFMDTYTLPKLNQEEVESLNRLKIASEIEAIINSL
PTKKNPGPDGFAAEFYQRYKEELVPFLLKLFQSIEKQGILPNSFYEASIILIPKPGRDTT
KKGNFRPISLMNIDVKILNKILANQIQQQIKKLIHHNQVGFIPGMQDCFNVPKSIDIIYH
INRTNDKNHMIMSIDAEKAFNKNQQPFVLKTLNKLGIDGMYLKIIRAIYDKPTANIILNG
QKLEAFPLKTGIRQGCPLSPLPFNIVMEVLAKAIRQEKEIKCIQLGKEEVKLSLFVDHMI
VYLENPIISAQNLLKLISNFSKVSGYKINVQKSQAFQYTNNRQRAKS

>gi568815592r:154059831_154365947|GENSCAN_predicted_CDS_5|1404_bp
atggggagaaaccagagtggaaaggctgaaaattccaaaaaccagaacacctcttctcct
ccaaaggaacacaactcctcaccagcaagggaacaaaactggatggagaatgaatttgat
gagttgacagaagtaggcttcagaagtgacggggagaatgggaccaaattggaaaacact
cttcaggatattatccaggagaacttccccaacctagcaaggcaggtcaacattcaaatt
caggaaatacagagaacgccacaaagatactccttgagaagagcaaccccaagacacata
actgtgagattcatcaaggttgaaatgaaggaaaaaatgttaagggcagtcagagagaaa
gaaatacaaactaccatcagagaatactataaacacctctacacaaataaactagaaaat
ctagaagaaactgagaaattcatggacacatacaccctcccaaaactaaaccaggaagaa
gttgaatctctgaatagactaaaaatagcttctgaaattgaggcaataattaatagccta
ccaaccaaaaaaaatccaggaccagatggattcgcagccgaattctaccagaggtacaaa
gaggagctggtaccattccttctgaaactattccaatcaatagaaaaacagggaatcctc
ccaaactcattttatgaggccagcatcatcctgataccaaagcctggcagagacacaaca
aaaaaagggaattttaggccaatatccctgatgaacattgatgtaaaaatcctcaataaa
atactggcaaaccaaatccagcagcaaatcaaaaagcttatccaccacaatcaagtcggc
ttcatccctgggatgcaagactgcttcaacgtacccaaatcaatagacataatctatcac
ataaacagaaccaatgataaaaaccacatgattatgtcaatagatgcagaaaaggccttc
aacaaaaatcaacagcctttcgtgctaaaaactctcaataaactaggtattgatggaatg
tatctcaaaataataagagctatttatgacaaacccacagccaatatcatactgaatggg
caaaaactggaagcattccctttgaaaactggcataagacaaggatgccctctctcacca
ctcccattcaacatagtaatggaagttctggccaaagcaatcagacaagagaaagaaata
aagtgtattcaattaggaaaagaggaggtcaaattgtctttgtttgtggatcacatgatt
gtatatttagaaaaccccatcatctcagcccaaaatctccttaagctgataagcaacttc
agcaaagtctcaggatacaaaatcaatgtgcaaaaatcacaagcattccaatacaccaat
aacagacagagagccaaatcatga

>gi568815592r:154059831_154365947|GENSCAN_predicted_peptide_6|323_aa
MSRRRISCKDLGHADCQGWLYKKKEKGSFLSNKWKKFWVILKGSSLYWYSNQMAEKADGF
VNLPDFTVERASECKKKQWLNKLGSAVIHQESTTKDEECYSESEQEDPEIAAETPPPPHA
SQTQSLALGLSSGCHCSLAANFALIVSPTNGLLFPKSVPDIPALVPVERQSLPDTVNSLS
AAEDEGQPITFAVQVHSPVPSEAGIHKALENSFVTSESGFLNSLSSDDTSSLSSNHDHLT
VPDKPAGSKIMDKGLVPCGPVETEFEVQNLGTSAAEAPAKFWAYWGMPVLSEQTIDWGME
EEEKGAAHSFGRVLERSELITVG

>gi568815592r:154059831_154365947|GENSCAN_predicted_CDS_6|972_bp
atgagtcggaggaggatatcgtgtaaagatctgggccatgctgactgccaagggtggctg
tataagaaaaaggaaaagggaagtttcctaagcaacaaatggaaaaagttctgggtgata
ctgaaggggtcgtcactgtactggtatagcaatcaaatggcagagaaagctgatggattt
gtcaacctgcctgatttcactgtggaaagagcatctgaatgcaagaaaaagcagtggtta
aataaacttggatcggctgtaatccatcaggaatccactacaaaggatgaagaatgttac
agtgaaagtgaacaggaagatccagaaatagctgcggagacaccaccccctcctcacgct
tcccagactcagtctttggcccttggcctgtcttcaggctgccattgcagtcttgctgcc
aattttgcccttatcgtcagcccaacaaacggcctgctgttccccaaaagcgttccagac
attcctgccctcgtacctgtagagagacaatccttgcctgacacagttaacagtttgtct
gctgctgaagatgagggacaaccaataacgtttgctgtgcaagttcattcacctgtaccc
tcagaggcaggcatccacaaggccctggaaaacagttttgtcacatcagaaagtggattt
ttgaactctttatctagtgatgatacttcttcattgagtagcaatcatgaccatcttact
gtcccagataagcctgctggatcaaagatcatggacaaaggtctcgtgccctgcggccct
gtggagacagaatttgaggtacaaaacctgggaacctcagcagcagaggctccggccaaa
ttctgggcctactggggcatgcctgtgctgtcagagcagacaatagactggggtatggaa
gaggaggagaagggagcagcacattcatttggcagggtcttggaaaggagtgaacttata
actgttggctaa

>gi568815592r:154059831_154365947|GENSCAN_predicted_peptide_7|132_aa
MLAFSKTLSQQQVDLYKVHKHRQTMCVILKPEVRAKRKQKNACYPRGRSLDRRQVGTTSW
DFTSERGTCALAEARLTFTRSRSPDTAVLQRAEPCGQVRENETPSREWESKRRQGSRRMD
AKVILKVEILRS

>gi568815592r:154059831_154365947|GENSCAN_predicted_CDS_7|399_bp
atgctggcattcagcaagacattatcacagcagcaagtggatttatacaaagtccacaaa
cacaggcaaacaatgtgcgttattcttaagccagaagtcagagctaagaggaaacaaaaa
aatgcttgttatcctcgtggcagaagtcttgatcgtcgacaagtaggcaccacttcatgg
gattttacatctgaaagaggaacatgtgctctagcagaagccagactgacattcaccagg
tccaggtctcctgacactgctgtgctacaaagagctgagccctgtggacaggtccgggag
aatgagacgccaagtagagaatgggaatccaagagacgccaaggctccagacgtatggat
gcaaaagtgatcttgaaagtagagatcctccgatcctag

>gi568815592r:154059831_154365947|GENSCAN_predicted_peptide_8|94_aa
MSLRRDERRLAESGVLKAKRKRVLGWDPVLQGAPLAADWMVPTRIEAMLTAKCVPLWKVL
INEQKELLKPVVLVVQLMDIQISFGAYLSCIDVF

>gi568815592r:154059831_154365947|GENSCAN_predicted_CDS_8|285_bp
atgagcttgagaagagatgaaagaagactggcagaaagtggagtactgaaagccaagaga
aaaagagtattaggatgggatcctgtgctgcagggagctccactggcagctgattggatg
gtgcccacccgtattgaagcaatgctcacagcaaagtgtgtgccactatggaaagtcctc
atcaatgagcagaaagagttattaaaacccgttgtcctggttgtccaactcatggacata
caaattagctttggtgcataccttagctgtatagacgtcttctaa

>gi568815592r:154059831_154365947|GENSCAN_predicted_peptide_9|134_aa
MSQDPWCSSTRRSHIMTTSLSFHVLVLCFSSICISSKSLSPKILTSCFSTEKSHSHTLSY
RNPSDFGACKDMRLPVSQMEKLRHEENNPMFTGLATGSIKIFPPVVQDSSRYRSAQYAGA
RIPTTITDGARGEL

>gi568815592r:154059831_154365947|GENSCAN_predicted_CDS_9|405_bp
atgagtcaagatccctggtgttcctccactcgtcggagccatatcatgactacttcactg
tcctttcatgtcctggttttgtgcttttcttccatctgtatatccagtaaatcattatca
ccaaagatacttacatcctgtttttcaactgaaaaatctcattcacacacattatcttat
agaaaccccagtgactttggggcatgtaaagatatgaggctccccgtttcacaaatggag
aaactaagacatgaagaaaacaaccccatgttcacaggtttagcaactggcagcataaag
atcttccctcctgtggtccaggattcttcccggtataggagtgctcaatatgccggagca
cgaataccaactaccatcacagatggcgccaggggagagctctga

>gi568815592r:154059831_154365947|GENSCAN_predicted_peptide_10|101_aa
MVVEVEVEIKGVVLEVVVVGEVMVEVTVEMVEVVVEAMVEVVMEMVEMVIGVVEVMVEVT
VEMVEVVVEEMVEVVVEEMVEVVVEVVVEMVVGGDGGGDRW

>gi568815592r:154059831_154365947|GENSCAN_predicted_CDS_10|306_bp
atggtggtggaggtggaggtggagataaagggggtggtgttggaagtggtggtcgtaggg
gaggtgatggtggaagtgacggtggagatggtagaggtggttgtggaggcgatggtggag
gtggtaatggagatggtagaaatggtgattggagtggtagaggtgatggtggaagtgacg
gtagagatggtggaggtggttgtggaggagatggtggaggtggtggtggaggagatggtg
gaggtggtggtggaggtggtggtggagatggtggttggaggtgacggtggaggtgacaga
tggtag

>gi568815592r:154059831_154365947|GENSCAN_predicted_peptide_11|75_aa
MEVVESGKQKTQPGSVAKGNPWMGIRQLNHTANISMELASRACLQCTLSCVIIMMVNQGM
RHAFSRSRSLEGPCA

>gi568815592r:154059831_154365947|GENSCAN_predicted_CDS_11|228_bp
atggaagtggtggaatccgggaaacagaagactcaacctgggagcgttgcaaagggaaat
ccttggatgggaatcaggcagctgaaccacacagcaaacatcagcatggagctcgcatcc
cgtgcatgtctccagtgcacattgtcctgtgttattataatgatggtgaatcagggcatg
cgacatgcattctcaaggtcccggtccttagaagggccctgtgcttag