Result of FASTA (ccds) for pF1KB5447
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5447, 413 aa
  1>>>pF1KB5447 413 - 413 aa - 413 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3649+/-0.00092; mu= 16.0110+/- 0.055
 mean_var=57.7077+/-11.909, 0's: 0 Z-trim(104.4): 24  B-trim: 0 in 0/49
 Lambda= 0.168833
 statistics sampled from 7893 (7903) to 7893 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.243), width:  16
 Scan time:  2.590

The best scores are:                                      opt bits E(32554)
CCDS7479.1 GOT1 gene_id:2805|Hs108|chr10           ( 413) 2781 685.9 1.9e-197
CCDS10801.1 GOT2 gene_id:2806|Hs108|chr16          ( 430) 1323 330.7 1.6e-90
CCDS67045.1 GOT2 gene_id:2806|Hs108|chr16          ( 387) 1075 270.3 2.2e-72
CCDS47839.1 GOT1L1 gene_id:137362|Hs108|chr8       ( 421)  761 193.8 2.5e-49


>>CCDS7479.1 GOT1 gene_id:2805|Hs108|chr10                (413 aa)
 initn: 2781 init1: 2781 opt: 2781  Z-score: 3658.3  bits: 685.9 E(32554): 1.9e-197
Smith-Waterman score: 2781; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413)

               10        20        30        40        50        60
pF1KB5 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 IANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 ARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLEN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 APEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 APEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 IRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 IRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 AQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGM
              310       320       330       340       350       360

              370       380       390       400       410   
pF1KB5 FSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 FSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIQ
              370       380       390       400       410   

>>CCDS10801.1 GOT2 gene_id:2806|Hs108|chr16               (430 aa)
 initn: 1293 init1: 914 opt: 1323  Z-score: 1738.7  bits: 330.7 E(32554): 1.6e-90
Smith-Waterman score: 1323; 48.9% identity (78.1% similar) in 407 aa overlap (5-411:31-430)

                                         10        20        30    
pF1KB5                           MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKV
                                     : ...: .. :  .. .:  :..: . .:.
CCDS10 MALLHSGRVLPGIAAAFHPGLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKM
               10        20        30        40        50        60

           40        50        60        70        80        90    
pF1KB5 NLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSP
       :::::::: :. .:.::: :.:.: .::  : :..::::: ::::: . ...::::..: 
CCDS10 NLGVGAYRDDNGKPYVLPSVRKAEAQIAAKN-LDKEYLPIGGLAEFCKASAELALGENSE
               70        80        90        100       110         

          100       110       120       130       140       150    
pF1KB5 ALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFK
       .::  :   ::...:::::::::.:: :... . .    :.. .::: ::. .:  ::..
CCDS10 VLKSGRFVTVQTISGTGALRIGASFLQRFFKFSRD----VFLPKPTWGNHTPIFRDAGMQ
     120       130       140       150           160       170     

          160       170       180       190       200       210    
pF1KB5 DIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMK
        ...:::.: .  :.:. : ..:. . :: :...::::::::::.:: :::::.::.:.:
CCDS10 -LQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVK
          180       190       200       210       220       230    

          220       230       240       250       260       270    
pF1KB5 HRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVV
       .: :: ::: ::::::::. ..::::.:.:. .:..    ::..::.:::.:::: .:.:
CCDS10 KRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTMV
          240       250       260       270       280       290    

          280       290       300       310       320       330    
pF1KB5 GKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRILTM
        :. .   .: ::.. ..:  .:::: .::::.:. :..:.: ..:  .::.:::::. :
CCDS10 CKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAILNTPDLRKQWLQEVKVMADRIIGM
          300       310       320       330       340       350    

          340       350       360       370       380       390    
pF1KB5 RSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLT
       :..: . :.   .  .:.::::::::: ::::.:.::: :..:  ::.  .:::.:.:.:
CCDS10 RTQLVSNLKKEGSTHNWQHITDQIGMFCFTGLKPEQVERLIKEFSIYMTKDGRISVAGVT
          360       370       380       390       400       410    

          400       410   
pF1KB5 TKNLDYVATSIHEAVTKIQ
       ..:. :.: .::. :::  
CCDS10 SSNVGYLAHAIHQ-VTK  
          420        430  

>>CCDS67045.1 GOT2 gene_id:2806|Hs108|chr16               (387 aa)
 initn: 1165 init1: 914 opt: 1075  Z-score: 1413.0  bits: 270.3 E(32554): 2.2e-72
Smith-Waterman score: 1107; 43.5% identity (70.3% similar) in 407 aa overlap (5-411:31-387)

                                         10        20        30    
pF1KB5                           MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKV
                                     : ...: .. :  .. .:  :..: . .:.
CCDS67 MALLHSGRVLPGIAAAFHPGLAAAASARASSWWTHVEMGPPDPILGVTEAFKRDTNSKKM
               10        20        30        40        50        60

           40        50        60        70        80        90    
pF1KB5 NLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSP
       :::::::: :. .:.::: :.:                       : .            
CCDS67 NLGVGAYRDDNGKPYVLPSVRK-----------------------FVT------------
               70        80                                        

          100       110       120       130       140       150    
pF1KB5 ALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFK
                ::...:::::::::.:: :... . .    :.. .::: ::. .:  ::..
CCDS67 ---------VQTISGTGALRIGASFLQRFFKFSRD----VFLPKPTWGNHTPIFRDAGMQ
                   90       100       110           120       130  

          160       170       180       190       200       210    
pF1KB5 DIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMK
        ...:::.: .  :.:. : ..:. . :: :...::::::::::.:: :::::.::.:.:
CCDS67 -LQGYRYYDPKTCGFDFTGAVEDISKIPEQSVLLLHACAHNPTGVDPRPEQWKEIATVVK
             140       150       160       170       180       190 

          220       230       240       250       260       270    
pF1KB5 HRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVV
       .: :: ::: ::::::::. ..::::.:.:. .:..    ::..::.:::.:::: .:.:
CCDS67 KRNLFAFFDMAYQGFASGDGDKDAWAVRHFIEQGINVCLCQSYAKNMGLYGERVGAFTMV
             200       210       220       230       240       250 

          280       290       300       310       320       330    
pF1KB5 GKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRILTM
        :. .   .: ::.. ..:  .:::: .::::.:. :..:.: ..:  .::.:::::. :
CCDS67 CKDADEAKRVESQLKILIRPMYSNPPLNGARIAAAILNTPDLRKQWLQEVKVMADRIIGM
             260       270       280       290       300       310 

          340       350       360       370       380       390    
pF1KB5 RSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLT
       :..: . :.   .  .:.::::::::: ::::.:.::: :..:  ::.  .:::.:.:.:
CCDS67 RTQLVSNLKKEGSTHNWQHITDQIGMFCFTGLKPEQVERLIKEFSIYMTKDGRISVAGVT
             320       330       340       350       360       370 

          400       410   
pF1KB5 TKNLDYVATSIHEAVTKIQ
       ..:. :.: .::. :::  
CCDS67 SSNVGYLAHAIHQ-VTK  
             380          

>>CCDS47839.1 GOT1L1 gene_id:137362|Hs108|chr8            (421 aa)
 initn: 1015 init1: 682 opt: 761  Z-score: 999.1  bits: 193.8 E(32554): 2.5e-49
Smith-Waterman score: 1038; 40.3% identity (68.5% similar) in 409 aa overlap (1-409:1-399)

               10        20        30        40        50        60
pF1KB5 MAPPSVFAEVPQAQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQK
       :   ::: .:: :.  :  .:   ...:  : :. :.  .  :.. ::::  ::.:.. .
CCDS47 MPTLSVFMDVPLAHK-LEGSLLKTYKQDDYPNKIFLAYRVCMTNEGHPWVSLVVQKTRLQ
               10         20        30        40        50         

               70        80        90       100       110       120
pF1KB5 IANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFL
       :..: :::.:::: .::  : . .  : .:  : :. :.:::::...: .::...:..::
CCDS47 ISQDPSLNYEYLPTMGLKSFIQASLALLFGKHSQAIVENRVGGVHTVGDSGAFQLGVQFL
      60        70        80        90       100       110         

              130       140       150       160       170       180
pF1KB5 ARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLEN
         :.. .      ::. :   : :. ::.  ::  .  :  :: .:  .: . .:: .:.
CCDS47 RAWHKDARI----VYIISSQKELHGLVFQDMGFT-VYEYSVWDPKKLCMDPDILLNVVEQ
     120           130       140        150       160       170    

              190       200       210       220       230       240
pF1KB5 APEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWA
        :.  ..:.     :      ::  : .. :..: . .:::::   ::. ...::.:.  
CCDS47 IPHGCVLVMG----NIIDCKLTPSGWAKLMSMIKSKQIFPFFDIPCQGLYTSDLEEDTRI
          180           190       200       210       220       230

              250       260       270       280       290       300
pF1KB5 IRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPP
       ..::::.::::::.::.:::::.:.: :: :.::. . ...: ::::.: ...  : :::
CCDS47 LQYFVSQGFEFFCSQSLSKNFGIYDEGVGMLVVVAVNNQQLLCVLSQLEGLAQALWLNPP
              240       250       260       270       280       290

              310       320       330       340       350       360
pF1KB5 AQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGM
         :::...: : :: :. ::  ..: ... :.  . ... .:. : :::.:.:::.: : 
CCDS47 NTGARVITSILCNPALLGEWKQSLKEVVENIMLTKEKVKEKLQLLGTPGSWGHITEQSGT
              300       310       320       330       340       350

              370       380       390       400       410          
pF1KB5 FSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIQ       
        .. ::: .:::::: .::::.  .:.:: : ....:..:.. .:.:::           
CCDS47 HGYLGLNSQQVEYLVRKKHIYIPKNGQINFSCINANNINYITEGINEAVLLTESSEMCLP
              360       370       380       390       400       410

CCDS47 KEKKTLIGIKL
              420 




413 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:39:35 2016 done: Sat Nov  5 19:39:35 2016
 Total Scan time:  2.590 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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