Result of FASTA (ccds) for pF1KE1097
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1097, 606 aa
  1>>>pF1KE1097 606 - 606 aa - 606 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.0941+/-0.00126; mu= 3.0001+/- 0.077
 mean_var=489.1662+/-101.309, 0's: 0 Z-trim(114.3): 144  B-trim: 370 in 1/55
 Lambda= 0.057989
 statistics sampled from 14686 (14830) to 14686 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.456), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(32554)
CCDS34871.1 SCARA3 gene_id:51435|Hs108|chr8        ( 606) 4097 357.5 2.8e-98
CCDS34870.1 SCARA3 gene_id:51435|Hs108|chr8        ( 466) 2948 261.3 2.1e-69
CCDS32782.1 COLEC12 gene_id:81035|Hs108|chr18      ( 742) 1250 119.5 1.6e-26


>>CCDS34871.1 SCARA3 gene_id:51435|Hs108|chr8             (606 aa)
 initn: 4097 init1: 4097 opt: 4097  Z-score: 1877.9  bits: 357.5 E(32554): 2.8e-98
Smith-Waterman score: 4097; 100.0% identity (100.0% similar) in 606 aa overlap (1-606:1-606)

               10        20        30        40        50        60
pF1KE1 MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKGRPGPRCSRCQKNLSLHTSVRILYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKGRPGPRCSRCQKNLSLHTSVRILYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGLDPKALNNCSFCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGLDPKALNNCSFCH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSIHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSIHQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQRK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQNSESMHDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQNSESMHDL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEIGTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEIGTI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERFSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERFSLL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 SARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 GPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 GDIGPPGPEGPPGSPGPSGPQGKPGIAGKTGSPGQRGAMGPKGEPGIQGPPGLPGPPGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GDIGPPGPEGPPGSPGPSGPQGKPGIAGKTGSPGQRGAMGPKGEPGIQGPPGLPGPPGPP
              550       560       570       580       590       600

             
pF1KE1 GSQSFY
       ::::::
CCDS34 GSQSFY
             

>>CCDS34870.1 SCARA3 gene_id:51435|Hs108|chr8             (466 aa)
 initn: 2948 init1: 2948 opt: 2948  Z-score: 1359.6  bits: 261.3 E(32554): 2.1e-69
Smith-Waterman score: 2948; 100.0% identity (100.0% similar) in 457 aa overlap (1-457:1-457)

               10        20        30        40        50        60
pF1KE1 MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKGRPGPRCSRCQKNLSLHTSVRILYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKGRPGPRCSRCQKNLSLHTSVRILYL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 FLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGLDPKALNNCSFCH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGLDPKALNNCSFCH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSIHQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSIHQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQRK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 TDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQNSESMHDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQNSESMHDL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEIGTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEIGTI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 FTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERFSLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERFSLL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 SARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGR
       :::::::::::::::::::::::::::::::::::::                       
CCDS34 SARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGHTLFSHNRI              
              430       440       450       460                    

              490       500       510       520       530       540
pF1KE1 GPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK

>>CCDS32782.1 COLEC12 gene_id:81035|Hs108|chr18           (742 aa)
 initn: 1835 init1: 890 opt: 1250  Z-score: 589.8  bits: 119.5 E(32554): 1.6e-26
Smith-Waterman score: 1250; 35.0% identity (67.2% similar) in 588 aa overlap (17-601:2-581)

               10        20        30         40        50         
pF1KE1 MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKG-RPGPRCSRCQKNLSLHTSVRILY
                       ..:.: ..:.. .:   . : . : .:..:..: .:. :. .::
CCDS32                MKDDFA-EEEEVQSFGYKRFGIQEGTQCTKCKNNWALKFSIILLY
                               10        20        30        40    

      60        70        80        90       100        110        
pF1KE1 LFLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGL-DPKALNNCSF
       .. ::: ..::.:.  : .:.:...  .  ... :: ::. ....:. : :  . .  : 
CCDS32 ILCALLTITVAILGYKVVEKMDNVTGGMETSRQTYDDKLTAVESDLKKLGDQTGKKAIST
           50        60        70        80        90       100    

      120       130       140       150       160       170        
pF1KE1 CHEAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSI
         : . .  .:  :...:. : .    ..  :..   . ..:   . :... . . :: :
CCDS32 NSELSTFRSDILDLRQQLREITEKTSKNKDTLEKLQASGDALVDRQSQLKETLENNSFLI
          110       120       130       140       150       160    

      180       190       200       210       220       230        
pF1KE1 HQVNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQ
         ::..:  . . : . :  :. :. .:..       :   ....:.:  :  . : ..:
CCDS32 TTVNKTLQAYNGYVTNLQQDTSVLQGNLQNQMYSHNVVIMNLNNLNLTQVQQRNLITNLQ
          170       180       190       200       210       220    

      240       250       260       270       280       290        
pF1KE1 RKTDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQ-NSESM
       :..:. . ..:.: .:.::  ..:   .  .    : :...: ::.:... ... :....
CCDS32 RSVDDTSQAIQRIKNDFQNLQQVFLQAKKDTDWLKEKVQSLQ-TLAANNSALAKANNDTL
          230       240       250       260        270       280   

       300       310       320       330       340       350       
pF1KE1 HDLVLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEI
       .:.  :. ..  :..::... . .:.:..:::   . :.:::. .:..:: :.   : .:
CCDS32 EDMNSQLNSFTGQMENITTISQANEQNLKDLQDLHKDAENRTAIKFNQLEERFQLFETDI
           290       300       310       320       330       340   

       360       370       380       390       400       410       
pF1KE1 GTIFTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERF
        .:..::. : .:.... . :..:: .::  .  :...:  ::.... .   .  :: . 
CCDS32 VNIISNISYTAHHLRTLTSNLNEVRTTCTDTLTKHTDDLTSLNNTLANIRLDSVSLRMQQ
           350       360       370       380       390       400   

       420       430       440       450       460       470       
pF1KE1 SLLSARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGAPGPPGPRGFKGDMGVKGPV
       .:. .::: .: :::.:.:::: ::..::....: :::.: ::: :::: .:..:  ::.
CCDS32 DLMRSRLDTEVANLSVIMEEMKLVDSKHGQLIKNFTILQGPPGPRGPRGDRGSQGPPGPT
           410       420       430       440       450       460   

       480       490       500       510       520       530       
pF1KE1 GGRGPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQP
       :..: ::. :  :: :: : .:  : ::: ::::  : .:  : :::.::     : :.:
CCDS32 GNKGQKGEKGEPGPPGPAGERGPIGPAGPPGERGGKGSKGSQGPKGSRGS-----P-GKP
           470       480       490       500       510             

       540       550       560       570       580       590       
pF1KE1 GPKGDIGPPGPEGPPGSPGPSGPQGKPGIAGKTGSPGQRGAMGPKGEPGIQGPPGLPGPP
       ::.:. : ::: ::::. :  :::: ::. :  :. :. :. ::.: ::. : ::.::: 
CCDS32 GPQGSSGDPGPPGPPGKEGLPGPQGPPGFQGLQGTVGEPGVPGPRGLPGLPGVPGMPGPK
       520       530       540       550       560       570       

       600                                                         
pF1KE1 GPPGSQSFY                                                   
       ::::                                                        
CCDS32 GPPGPPGPSGAVVPLALQNEPTPAPEDNGCPPHWKNFTDKCYYFSVEKEIFEDAKLFCED
       580       590       600       610       620       630       




606 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:11:45 2016 done: Sat Nov  5 19:11:46 2016
 Total Scan time:  4.200 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com