Result of FASTA (ccds) for pF1KB5474
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5474, 246 aa
  1>>>pF1KB5474 246 - 246 aa - 246 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4240+/-0.000963; mu= 9.2922+/- 0.058
 mean_var=84.1534+/-16.838, 0's: 0 Z-trim(105.3): 23  B-trim: 106 in 1/52
 Lambda= 0.139810
 statistics sampled from 8345 (8353) to 8345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.257), width:  16
 Scan time:  2.280

The best scores are:                                      opt bits E(32554)
CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20         ( 246) 1568 325.9 1.5e-89
CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8           ( 245) 1368 285.6 2.1e-77
CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2          ( 245) 1287 269.3 1.7e-72
CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7           ( 247) 1164 244.5 5.1e-65
CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22         ( 246) 1150 241.6 3.6e-64
CCDS288.1 SFN gene_id:2810|Hs108|chr1              ( 248) 1060 223.5 1.1e-58
CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17         ( 255) 1024 216.2 1.7e-56


>>CCDS13339.1 YWHAB gene_id:7529|Hs108|chr20              (246 aa)
 initn: 1568 init1: 1568 opt: 1568  Z-score: 1721.2  bits: 325.9 E(32554): 1.5e-89
Smith-Waterman score: 1568; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246)

               10        20        30        40        50        60
pF1KB5 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 WRVISSIEQKTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WRVISSIEQKTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 LKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 YEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGD
              190       200       210       220       230       240

             
pF1KB5 AGEGEN
       ::::::
CCDS13 AGEGEN
             

>>CCDS6290.1 YWHAZ gene_id:7534|Hs108|chr8                (245 aa)
 initn: 1367 init1: 1367 opt: 1368  Z-score: 1503.2  bits: 285.6 E(32554): 2.1e-77
Smith-Waterman score: 1368; 87.3% identity (96.3% similar) in 245 aa overlap (3-246:1-245)

               10        20        30        40        50        60
pF1KB5 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
         :::.:::::::::::::::::::: ::.::::: ::::::::::::::::::::::::
CCDS62   MDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSS
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB5 WRVISSIEQKTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFY
       :::.::::::::  ::::::..:::::::.::.::::::: ::.:.:::::.: ::::::
CCDS62 WRVVSSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFLIPNASQAESKVFY
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB5 LKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFY
       :::::::.:::.:::.::.:.  :..::::::::::::::::::::::::::::::::::
CCDS62 LKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFY
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KB5 YEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGD
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::..::::..
CCDS62 YEILNSPEKACSLAKTAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEAE
      180       190       200       210       220       230        

              
pF1KB5 AGEG-EN
       :::: ::
CCDS62 AGEGGEN
      240     

>>CCDS1666.1 YWHAQ gene_id:10971|Hs108|chr2               (245 aa)
 initn: 1286 init1: 1286 opt: 1287  Z-score: 1414.9  bits: 269.3 E(32554): 1.7e-72
Smith-Waterman score: 1287; 81.6% identity (94.3% similar) in 245 aa overlap (3-246:1-245)

               10        20        30        40        50        60
pF1KB5 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
         :.:.::.::::::::::::::::. :::::::: :::::::::::::::::::.:::.
CCDS16   MEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAELSNEERNLLSVAYKNVVGGRRSA
                 10        20        30        40        50        

               70        80        90       100       110       120
pF1KB5 WRVISSIEQKTERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFY
       :::::::::::. ..:: :. :.::::.:.::..::. :::::::::: :::.:::::::
CCDS16 WRVISSIEQKTDTSDKKLQLIKDYREKVESELRSICTTVLELLDKYLIANATNPESKVFY
       60        70        80        90       100       110        

              130       140       150       160       170       180
pF1KB5 LKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFY
       :::::::::::.::: ::... :..::: ::::::.::::::::::::::::::::::::
CCDS16 LKMKGDYFRYLAEVACGDDRKQTIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFY
      120       130       140       150       160       170        

              190       200       210       220       230       240
pF1KB5 YEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDEGD
       :::::.:: ::.::::::::::::::::::.:::::::::::::::::::::.. :.: :
CCDS16 YEILNNPELACTLAKTAFDEAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDSAGEECD
      180       190       200       210       220       230        

              
pF1KB5 AGEG-EN
       :.:: ::
CCDS16 AAEGAEN
      240     

>>CCDS5584.1 YWHAG gene_id:7532|Hs108|chr7                (247 aa)
 initn: 1021 init1: 669 opt: 1164  Z-score: 1280.8  bits: 244.5 E(32554): 5.1e-65
Smith-Waterman score: 1164; 75.4% identity (89.5% similar) in 248 aa overlap (3-246:2-247)

               10        20        30        40        50        60
pF1KB5 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
         .:. .:::::.:::::::::::::::: ::: .. :::::::::::::::::::::::
CCDS55  MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSS
                10        20        30        40        50         

               70          80        90       100       110        
pF1KB5 WRVISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNA--TQPES
       :::::::::::  . :::: .: . :::::: ::. .:.::: :::.::: :   :: ::
CCDS55 WRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYES
      60        70        80        90       100       110         

        120       130       140       150       160       170      
pF1KB5 KVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNF
       :::::::::::.:::.:::.:... :.: .:..::.:: ::::..::::::::::::::.
CCDS55 KVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNY
     120       130       140       150       160       170         

        180       190       200       210       220       230      
pF1KB5 SVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQG
       ::::::: :.::.:: :::::::.::::::::::.:::::::::::::::::::::..: 
CCDS55 SVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD
     180       190       200       210       220       230         

        240      
pF1KB5 DEGDAGEGEN
       :.:  :::.:
CCDS55 DDG--GEGNN
     240         

>>CCDS13901.1 YWHAH gene_id:7533|Hs108|chr22              (246 aa)
 initn: 1003 init1: 658 opt: 1150  Z-score: 1265.5  bits: 241.6 E(32554): 3.6e-64
Smith-Waterman score: 1150; 75.5% identity (89.0% similar) in 245 aa overlap (4-244:3-245)

               10        20        30        40        50        60
pF1KB5 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
          :. .:.:.:.::::::::::::.::::::: .. ::::.::::::::::::::::::
CCDS13  MGDREQLLQRARLAEQAERYDDMASAMKAVTELNEPLSNEDRNLLSVAYKNVVGARRSS
                10        20        30        40        50         

               70          80        90       100       110        
pF1KB5 WRVISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNAT--QPES
       :::::::::::  . :::: .  : :::::: ::. .::::: ::::.:: : .  : ::
CCDS13 WRVISSIEQKTMADGNEKKLEKVKAYREKIEKELETVCNDVLSLLDKFLIKNCNDFQYES
      60        70        80        90       100       110         

        120       130       140       150       160       170      
pF1KB5 KVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNF
       :::::::::::.:::.:::::..:...:  :. ::.:::::::..:::::::::::::::
CCDS13 KVFYLKMKGDYYRYLAEVASGEKKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNF
     120       130       140       150       160       170         

        180       190       200       210       220       230      
pF1KB5 SVFYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQG
       ::::::: :.::.:: ::: :::.::::::::::.:::::::::::::::::::::..: 
CCDS13 SVFYYEIQNAPEQACLLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQD
     180       190       200       210       220       230         

        240      
pF1KB5 DEGDAGEGEN
       .:  ::::  
CCDS13 EE--AGEGN 
     240         

>>CCDS288.1 SFN gene_id:2810|Hs108|chr1                   (248 aa)
 initn: 1053 init1: 739 opt: 1060  Z-score: 1167.4  bits: 223.5 E(32554): 1.1e-58
Smith-Waterman score: 1060; 67.3% identity (89.0% similar) in 245 aa overlap (3-245:1-245)

               10        20        30        40        50        60
pF1KB5 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
         :... :.::::::::::::.:::: ::...:.:.::: :::::::::::::::..:..
CCDS28   MERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAA
                 10        20        30        40        50        

               70          80        90       100       110        
pF1KB5 WRVISSIEQKT--ERNEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKV
       :::.::::::.  : .:.:    .:::::.:.::: .:. :: :::..:: .: . ::.:
CCDS28 WRVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRV
       60        70        80        90       100       110        

      120       130       140       150       160       170        
pF1KB5 FYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV
       :::::::::.:::.:::.::.:.  ......:::::..:::::: ::.::::::::::::
CCDS28 FYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSV
      120       130       140       150       160       170        

      180       190       200       210       220       230        
pF1KB5 FYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDE
       :.::: ::::.: :::::.::::.:.: ::.:.::::::::::::::::::::..: :.:
CCDS28 FHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLWTADNAGEE
      180       190       200       210       220       230        

      240        
pF1KB5 GDAGEGEN  
       :  .  :   
CCDS28 GGEAPQEPQS
      240        

>>CCDS11001.1 YWHAE gene_id:7531|Hs108|chr17              (255 aa)
 initn: 736 init1: 736 opt: 1024  Z-score: 1127.9  bits: 216.2 E(32554): 1.7e-56
Smith-Waterman score: 1024; 66.1% identity (83.7% similar) in 245 aa overlap (4-246:3-243)

               10        20        30        40        50        60
pF1KB5 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSS
          :. .:: .:::::::::::.:. .:: :. .  ::. :::::::::::::.::::.:
CCDS11  MDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRAS
                10        20        30        40        50         

               70          80        90       100       110        
pF1KB5 WRVISSIEQKTERN--EKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKV
       ::.::::::: : .  : : .: .:::. .:.::. :: :.:..:::.::: :.  ::::
CCDS11 WRIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILDVLDKHLIPAANTGESKV
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB5 FYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSV
       :: :::::: :::.: :.:.... .. ::  ::. : .:.  :. :::::::::::::::
CCDS11 FYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSV
     120       130       140       150       160       170         

      180       190       200       210       220       230        
pF1KB5 FYYEILNSPEKACSLAKTAFDEAIAELDTLNEESYKDSTLIMQLLRDNLTLWTSENQGDE
       :::::::::..:: :::.:::.::::::::.:::::::::::::::::::::::. ::: 
CCDS11 FYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGD-
     180       190       200       210       220       230         

      240                  
pF1KB5 GDAGEGEN            
          :: .:            
CCDS11 ---GEEQNKEALQDVEDENQ
         240       250     




246 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:00:18 2016 done: Sat Nov  5 13:00:18 2016
 Total Scan time:  2.280 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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