GENSCAN 1.0	Date run:  7-Nov-116	Time: 15:40:46

Sequence gi568815580r:2439003_2667216 : 228214 bp : 39.20% C+G : Isochore 1 ( 0 - 43 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.02 PlyA -    308    303    6                               1.05
 1.01 Sngl -   1359   1060  300  0  0   95   48   148 0.321   7.05
 1.00 Prom -   8269   8230   40                              -5.35

 2.00 Prom +  13767  13806   40                              -3.35
 2.01 Init +  28130  28284  155  1  2   79   81    71 0.566   5.00
 2.02 Term +  30216  30405  190  0  1   72   54   135 0.502   4.44
 2.03 PlyA +  31287  31292    6                               1.05

 3.00 Prom +  32256  32295   40                              -6.05
 3.01 Init +  35285  35465  181  1  1   40   62   100 0.408   1.99
 3.02 Intr +  39663  39951  289  1  1   94   14   323 0.127  20.88
 3.03 Intr +  48121  48278  158  1  2   66   39    96 0.019   1.23
 3.04 Intr +  63989  64181  193  0  1  -70   29   320 0.550   7.93
 3.05 Term +  69782  69896  115  2  1   83   41    92 0.639   1.06
 3.06 PlyA +  72013  72018    6                               1.05

 4.00 Prom +  73312  73351   40                              -3.75
 4.01 Init +  77093  77140   48  1  0   89   75    84 0.913   8.20
 4.02 Term +  79657  79785  129  0  0   41   39   130 0.614   0.60
 4.03 PlyA +  80132  80137    6                               1.05

 5.08 PlyA -  81127  81122    6                               1.05
 5.07 Term -  90230  90117  114  2  0  118   41    79 0.101   3.79
 5.06 Intr -  96282  96145  138  0  0   31   99    74 0.083   2.54
 5.05 Intr - 108527 108353  175  1  1  108  106    27 0.724   5.52
 5.04 Intr - 113762 113693   70  0  1   89   97    38 0.804   2.12
 5.03 Intr - 116036 115667  370  2  1   76   93   175 0.940  10.55
 5.02 Intr - 124857 124795   63  0  0   72  115    28 0.779   1.90
 5.01 Init - 128214 127819  396  0  0   31   70   288 0.983  18.05
 5.00 Prom - 128295 128256   40                              -7.05

 6.00 Prom + 129090 129129   40                              -9.65
 6.01 Init + 129388 129454   67  0  1   68   72    69 0.717   4.59
 6.02 Intr + 130668 130858  191  1  2   45  116    38 0.844   0.68
 6.03 Intr + 130950 131061  112  2  1   68   67   130 0.949   7.93
 6.04 Intr + 132244 132520  277  2  1   44   34   306 0.805  16.45
 6.05 Term + 132719 132866  148  2  1   84   40   140 0.801   5.19
 6.06 PlyA + 133753 133758    6                               1.05

 7.00 Prom + 133780 133819   40                             -12.13
 7.01 Init + 133984 134084  101  0  2   71   92    80 0.381   6.49
 7.02 Intr + 138744 138867  124  0  1   47   65    97 0.320   2.97
 7.03 Intr + 146111 146200   90  1  0   53   76    75 0.438   2.07
 7.04 Intr + 148828 148921   94  0  1   43   80   100 0.849   3.32
 7.05 Intr + 150202 150308  107  2  2   57   65    92 0.901   2.81
 7.06 Intr + 151016 151160  145  1  1   73   87   109 0.999   8.23
 7.07 Intr + 156414 156619  206  1  2   72   80   279 0.561  23.50
 7.08 Intr + 160017 160169  153  2  0  108   92    85 0.999  10.25
 7.09 Intr + 162394 162483   90  0  0  100  108    77 0.998  10.17
 7.10 Intr + 167413 167505   93  0  0   45  116    84 0.302   6.14
 7.11 Intr + 169698 169828  131  2  2   51   83   188 0.999  13.17
 7.12 Intr + 171757 171859  103  1  1   77  107    62 0.999   6.26
 7.13 Term + 177435 177572  138  2  0   79   49   176 0.999   9.78
 7.14 PlyA + 177609 177614    6                               1.05

 8.05 PlyA - 177884 177879    6                               1.05
 8.04 Term - 186368 186235  134  0  2   99   44   161 0.353  10.07
 8.03 Intr - 194197 194059  139  1  1   98   80    98 0.574   9.12
 8.02 Intr - 195787 195596  192  1  0  101   95     0 0.099   0.77
 8.01 Init - 202888 202766  123  1  0   73   49   106 0.352   5.42
 8.00 Prom - 208078 208039   40                              -5.25

 9.04 PlyA - 208593 208588    6                               1.05
 9.03 Term - 216410 216234  177  2  0    3   39   194 0.779   2.70
 9.02 Intr - 217295 217018  278  0  2   48   69   278 0.882  18.21
 9.01 Init - 217405 217336   70  1  1  102   44    42 0.665   2.48

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Intr -  31945  31776  170  0  2   88   88   107 0.803   9.37
S.002 Term +  39663  39955  293  1  2   94   50   325 0.873  23.82


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815580r:2439003_2667216|GENSCAN_predicted_peptide_1|99_aa
MENVCVVSIDQTSHNISLIQSLIQSKALALFNSVKAEKGEQDAEEKLETSRGLFITKVQD
KAASADVEAAASYPDLTKILDEVGHTKPQIFSVNETDLY

>gi568815580r:2439003_2667216|GENSCAN_predicted_CDS_1|300_bp
atggagaacgtttgtgtggtctcgatagatcaaaccagccataacatttccttaatccaa
agtctaattcagagcaaggccctagctcttttcaattctgtgaaagctgagaaaggtgag
caagatgcagaagaaaagttggaaactagcagaggtttgttcataacaaaagtgcaagat
aaggcagcaagtgctgatgtagaagctgcagcaagttatccagatctaactaagatcctt
gatgaagttggccacactaaaccacagattttcagtgtaaatgaaacagatctctattga

>gi568815580r:2439003_2667216|GENSCAN_predicted_peptide_2|114_aa
MIIQRRQYKETQGEDSHLQAKERGLEQILSLYPSQGTNPASTLILDIQPGEWLKVAPGDI
NSSLSGLNQNAGARGTQGVTEKAQEQGAKRLQVHGGGMLVVGEESECNRSVHQH

>gi568815580r:2439003_2667216|GENSCAN_predicted_CDS_2|345_bp
atgatcatacagagaagacaatataaggagacacagggagaagacagccatctacaggcc
aaggagagaggcctggaacagatcctttccttatatccctcacaaggaaccaaccctgcc
agcactttgattttggatatccagcctggagaatggttgaaggttgctcctggggacatt
aactcttcactctctgggctgaatcagaatgctggggccaggggaactcaaggggtgaca
gagaaggctcaagagcagggagcaaaaagacttcaagtgcacggaggaggaatgttggta
gtgggagaggaatctgagtgcaacagatctgtccaccagcactga

>gi568815580r:2439003_2667216|GENSCAN_predicted_peptide_3|311_aa
MNPPRALKRSLMMQRRDWKGERWGLQQVQVPGAARAEEVMLYPPSWVMDVGSASAWLEGL
DKLATNKLVLKFTWKGKTQNSQHNTEKENTWRKEEEKEGLGGGGRRRKRRRKKEKEEEED
GGGRGRRWRRRRKKIEEEEEEEGGGGRRRRRRAEEGQNMDGAGGYYPQKTIAGTENQISH
VLTYRWELNAENLRTQRRKQHTGVYLKVEEEEEEEGEEEEEEEAAVAEEENKKEEEGRKK
RKKKEEEEEEEEEQRKKGKKRKKERSLYTFHSSICVAKAWIQCKQVYHSFLQTHDINMVF
MKTGGVYAEPL

>gi568815580r:2439003_2667216|GENSCAN_predicted_CDS_3|936_bp
atgaacccacctcgggctttgaaacggtcactaatgatgcaaagaagagattggaaagga
gagaggtggggtttgcagcaagtccaagttcctggagctgcaagagcagaggaggtaatg
ctgtatccaccttcttgggtcatggatgttggaagtgcaagtgcatggctggaggggctt
gacaaactggctactaacaagctggttctaaagtttacatggaaaggcaagacccaaaat
agccagcacaatactgagaaagaaaatacttggaggaaggaggaggagaaagaaggacta
ggaggaggaggaagaaggagaaagaggaggaggaagaaggagaaggaggaggaggaagat
ggaggaggaagaggaagaagatggaggaggaggaggaagaagatagaggaggaggaggaa
gaagagggaggaggaggaagaaggaggaggaggagggcagaagaagggcagaatatggat
ggagctggaggctattatcctcagaaaactattgcaggaacagaaaaccaaatatcacat
gttctcacttataggtgggagctaaatgctgagaacttacgaacacaaagaaggaaacag
cacactggggtttacttgaaggtggaggaagaggaagaggaagaaggagaagaagaagaa
gaagaagaagcagcggtggcagaggaggagaataaaaaggaggaagaaggaagaaagaag
aggaagaagaaggaagaagaagaggaggaggaggaggagcagagaaaaaaaggaaagaaa
agaaaaaaggagagaagtttgtacacatttcactcttccatttgtgtagcaaaagcctgg
attcaatgcaagcaggtctaccactccttcttacaaacacatgacatcaacatggtcttt
atgaaaactggaggtgtctatgcagagcctctgtaa

>gi568815580r:2439003_2667216|GENSCAN_predicted_peptide_4|58_aa
MEIGEQQQSLGRNAKQVTVLTQRKVSRVSRNRLAFVSAVQEELSKLQRTVWALKRTLA

>gi568815580r:2439003_2667216|GENSCAN_predicted_CDS_4|177_bp
atggagattggagagcagcagcagtcacttggccggaatgcaaagcaggtgactgtgctg
acacagaggaaagtgtcgagagtttcccgaaacaggttggcctttgttagtgcagtccag
gaagaactctccaaactgcagaggactgtctgggctctgaagagaacactggcttaa

>gi568815580r:2439003_2667216|GENSCAN_predicted_peptide_5|441_aa
MSVVHQLSAGWLLDHLSFINKINYQLHQHHEPCCRKKEFTTSVHFESLQMDSVSSSGVCA
AFIASDSSTKPENDDGGNYEMFTRKFVFRPELFDVTKPYITPAVHKECQQSNEKEDLMNG
VKKEISISIIGKKRKRCVVFNQGELDAMEYHTKIRELILDGSLQLIQEGLKSGFLYPLFE
KQDKGSKPITLPLDACSLSELCEMAKHLPSLNEMEHQTLQLVEEDTSVTEQDLFLRVVEN
NSSFTKVITLMGQKYLLPPKSSFLLSDISCMQPLLNYRKTFDVIVIDPPWQNKSVKRSNR
YSYLSPLQIQQIPIPKLAAPNCLLVTWVTNRQKHLRFIKEELYPSWSVEVVAEWHWVKLQ
ADAGFSPDVIERIIITSKDLPFPEDAVRFTSFDSCHAPLAYHVLVRKLEREDAKRWDDGK
GRVYGRARNRWKFLKPIEENA

>gi568815580r:2439003_2667216|GENSCAN_predicted_CDS_5|1326_bp
atgtctgtggtacaccagttgtcagctgggtggttactggatcatctttcttttatcaac
aagataaactatcaacttcaccagcatcatgaaccttgttgccgtaaaaaggagttcact
acttctgttcactttgagtctcttcaaatggattctgtgtcctcctctggagtctgtgct
gcatttattgcttctgactcttccactaagccagagaatgatgatggaggaaattatgaa
atgttcacacgaaaatttgtttttcgacctgaactgtttgatgtcaccaaaccttatata
actccagctgttcataaagaatgccagcaaagtaatgaaaaggaagatctgatgaatggt
gttaaaaaagaaatctccatttctattattgggaagaagcgtaaaagatgtgttgttttc
aatcaaggtgaattggatgctatggaataccatacaaagatcagggagctgattttggat
ggatctttacagttgatccaggaaggtctcaaaagtggttttctttatccactttttgaa
aaacaggacaagggtagtaagcccattactttaccacttgacgcctgcagtttgtcagaa
ttatgtgaaatggcaaagcatttgccttctctgaatgaaatggaacatcagacattacaa
ttggtggaagaggatacatctgttacagaacaggatttatttttgcgagttgttgaaaac
aactctagctttacaaaagtgattactttaatgggacagaaatacctgctaccaccgaaa
agcagttttcttttatctgacatttcttgtatgcaaccacttctaaactataggaaaaca
tttgatgtaattgtgatagatccaccatggcagaacaaatcagttaaaagaagtaatagg
tacagttatttgtcacccctgcaaatacagcaaatacctatccctaaattggctgctcca
aactgtcttcttgttacttgggtgaccaatagacagaagcacctacgttttataaaggaa
gaactttatccctcttggtctgtggaggtagttgctgagtggcactgggtaaaacttcag
gcagatgctggcttttctcctgatgtgattgagaggattataatcacttcaaaggacctt
cccttccctgaagatgctgtccgatttacctcatttgattcatgtcatgcaccactggcc
taccatgtcttggtaaggaagttagaaagagaagatgcgaaaagatgggacgatggaaaa
ggaagggtatatgggagggcaagaaacagatggaaatttctgaagccaattgaagaaaat
gcttaa

>gi568815580r:2439003_2667216|GENSCAN_predicted_peptide_6|264_aa
MAVTTGSGVGVPLNFQLLEEPEAQIISPLLRSPLRFAFHEEFRAFPISSLPHLYQEMLLP
PRQVSFCTVTTQHFPRHFFALTRSHKPFNSGFDMVKRVTRVIQTPRLSGSLVVKPGKRPH
EDNFHREKAFSFSKSPWAPPCCCTEKRFQGELSVQGTPRRSSCPQVFRPNFRGRASLRRD
GHTGPQTPVPGVTQLGATSTQPSSDEAVAWKLLRASAVLEEESDGANDLNLEVLRRCFGV
CLLLGEASRPKLCEALVSRDLLNF

>gi568815580r:2439003_2667216|GENSCAN_predicted_CDS_6|795_bp
atggcagtcaccacaggctcaggagtaggagtacctctcaatttccaactgttggaagaa
cctgaagcacagatcataagccctctgctccgctcccctctgagattcgccttccatgag
gaattcagggctttccccatatcttctcttccccacctttatcaagagatgctgctccct
ccccgtcaagtctctttttgcactgtcaccacccaacactttccacgacacttctttgct
ttgaccagaagccataagccttttaactcaggttttgatatggtgaaaagagtcaccagg
gttattcagacaccccggctgtcagggtccttggtggttaaacctgggaaaaggccacat
gaagacaacttccacagagaaaaagctttctccttttctaagagtccatgggcgccgcca
tgttgctgtacggaaaaacgtttccagggcgagttgagcgttcagggcactcctcggcgc
tcaagctgcccacaggtcttccgacctaactttaggggtcgtgccagtcttcgtagagac
ggccacactggcccacagaccccagttcctggggtgacgcagctgggcgcgaccagcacg
cagccttccagcgacgaggcggtcgcatggaagttactgcgcgcgtcagctgttctggag
gaagaaagtgatggcgccaatgacttaaatttagaggtcctgaggcgatgttttggtgtt
tgtttgctgttgggagaagcctcgaggccaaaactgtgcgaggcgctggtttcacgggat
ctattaaatttctag

>gi568815580r:2439003_2667216|GENSCAN_predicted_peptide_7|524_aa
MKRSSVSSGGAGRLSMQELRSQDVNKQGLYTPQTTSGHGSRNSQLGIFSSSEKIKDPRPL
NDKAFIQQCIRQLCEIHTAMKESSPLFDDGQPWGEETEDGIMHNKLFLDYTIKCYESFMS
GADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIARLEQEREKEPNRLESLRK
LKASLQGDVQKYQAYMSNLESHSAILDQKLNGLNEEIARVELECETIKQENTRLQNIIDN
QKYSVADIERINHERNELQQTINKLTKDLEAEQQKLWNEELKYARGKEAIETQLAEYHKL
ARKLKLIPKGAENSKGYDFEIKFNPEAGANCLVKYRAQVYVPLKELLNETEEEINKALNK
KMGLEDTLEQLNAMITESKRSVRTLKEEVQKLDDLYQQKIKEAEEEDEKCASELESLEKH
KHLLESTVNQGLSEAMNELDAVQREYQLVVQTTTEERRKVGNNLQRLLEMVATHVGSVEK
HLEEQIAKVDREYEECMSEDLSENIKEIRDKYEKKATLIKSSEE

>gi568815580r:2439003_2667216|GENSCAN_predicted_CDS_7|1575_bp
atgaagcgcagttcagtttccagcggtggtgctggccgcctctccatgcaggagttaaga
tcccaggatgtaaataaacaaggcctctatacccctcaaacaactagtggacatggatcc
cggaatagtcaacttggtatattttccagttctgagaaaatcaaggacccgagaccactt
aatgacaaagcattcattcagcagtgtattcgacaactctgtgagatacatactgccatg
aaagaaagctcacctttatttgatgatgggcagccttggggagaagaaactgaagatgga
attatgcataataagttgtttttggactacaccataaaatgctatgagagttttatgagt
ggtgccgacagctttgatgagatgaatgcagagctgcagtcaaaactgaaggatttattt
aatgtggatgcttttaagctggaatcattagaagcaaaaaacagagcattgaatgaacag
attgcaagattggaacaagaaagagaaaaagaaccgaatcgtctagagtcgttgagaaaa
ctgaaggcttccttacaaggagatgttcaaaagtatcaggcatacatgagcaatttggag
tctcattcagccattcttgaccagaaattaaatggtctcaatgaggaaattgctagagta
gaactagaatgtgaaacaataaaacaggagaacactcgactacagaatatcattgacaac
cagaagtactcagttgcagacattgagcgaataaatcatgaaagaaatgaattgcagcag
actattaataaattaaccaaggacctggaagctgaacaacagaagttgtggaatgaggag
ttaaaatatgccagaggcaaagaagcgattgaaacacaattagcagagtatcacaaattg
gctagaaaattaaaacttattcctaaaggtgctgagaattccaaaggttatgactttgaa
attaagtttaatcccgaggctggtgccaactgccttgtcaaatacagggctcaagtttat
gtacctcttaaggaactcctgaatgaaactgaagaagaaattaataaagccctaaataaa
aaaatgggtttggaggatactttagaacaattgaatgcaatgataacagaaagcaagaga
agtgtgagaactctgaaagaagaagttcaaaagctggatgatctttaccaacaaaaaatt
aaggaagcagaggaagaggatgaaaaatgtgccagtgagcttgagtccttggagaaacac
aagcacctgctagaaagtactgttaaccaggggctcagtgaagctatgaatgaattagat
gctgttcagcgggaataccaactagttgtgcaaaccacgactgaagaaagacgaaaagtg
ggaaataacttgcaacgtctgttagagatggttgctacacatgttgggtctgtagagaaa
catcttgaggagcagattgctaaagttgatagagaatatgaagaatgcatgtcagaagat
ctctcggaaaatattaaagagattagagataagtatgagaagaaagctactctaattaag
tcttctgaagaatga

>gi568815580r:2439003_2667216|GENSCAN_predicted_peptide_8|195_aa
MLLENNVMLASKRCDYEEMKLIIRKETETVVCEPREALRGGEWKELSMEGYPLPSPPPQR
SCHLPLIGKQLRGHPHLFLKPASFWWVESPASEQMISFSQVRGLKAQHHAEAAKVWDFHP
LKPQPKLYVGPFQPWLEWLGTGHQVPRLHTAACRGDTTELPGDAAAPLTRADGLDGVSSR
PSCGTWSSGGSSGFT

>gi568815580r:2439003_2667216|GENSCAN_predicted_CDS_8|588_bp
atgctgctggaaaataacgtgatgcttgccagcaagagatgtgactatgaagaaatgaaa
ctgattatcagaaaagaaaccgaaactgtggtttgtgagcctagagaagcactcagagga
ggggagtggaaagagctgtcgatggagggctacccattaccctcccctcctccacaaagg
agctgtcacctccccttaataggcaaacaactcaggggccatccccatttgtttcttaaa
cctgcaagtttctggtgggtggagtctcctgcttcagaacaaatgatatctttctcccaa
gtcagaggtctcaaggctcaacaccacgcagaagctgccaaggtgtgggacttccaccct
ctgaagccacagcccaagctgtacgttggcccctttcagccatggctggagtggctggga
acagggcaccaagtccctagactgcacactgcagcctgcagaggagacaccactgagctt
cctggtgatgctgcagcccctctcaccagggctgatggccttgatggggtgtcctcaagg
ccttcctgtggaacatggtcctctggagggtcttctggctttacatga

>gi568815580r:2439003_2667216|GENSCAN_predicted_peptide_9|174_aa
MAGTREREAKAAGPGPGDRFIALIYTRIPSSPLRVPDTHTREIPRSPSAPRPAEAGPRAR
TPFRADQTSTPSCGRRLRHPPQSPQRPHQARRRPPLPYWGKGEKTATPAAAGLRAEVPRR
LTEPSLAGSRGRGGGKLQAGGTRRAQSPPKRARGSLCRENRRYESRRPFFLLIS

>gi568815580r:2439003_2667216|GENSCAN_predicted_CDS_9|525_bp
atggcgggcacacgggagagggaagccaaggccgcaggaccgggaccgggtgacaggttt
attgccctcatctacacgcgcatcccttcctcgccccttcgcgtacctgacacacacacg
cgcgaaatcccgcgtagtccgagcgctccccgacctgcagaggccggtccccgagctcgg
actccttttcgcgccgatcaaacaagtacaccgtcctgtggccgacgcctccgccatcct
cctcagtccccacagaggccccaccaggcccgccgccgtccgccgctgccatattgggga
aaaggagaaaagacagcgacgcctgccgccgccgggctcagggctgaggtgccgcgccgg
ctgactgagccctctctggctgggtcgcgtggacgcggcggcgggaagcttcaggccggc
ggtactcgccgggcgcagagtccaccaaagcgagcacgtgggtccctctgccgagaaaat
aggcgctacgagagccggcgcccctttttcctcctcatttcttag