Result of FASTA (omim) for pF1KB7995
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7995, 450 aa
  1>>>pF1KB7995 450 - 450 aa - 450 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2238+/-0.000485; mu= 17.6414+/- 0.030
 mean_var=65.7088+/-13.806, 0's: 0 Z-trim(108.6): 43  B-trim: 78 in 1/49
 Lambda= 0.158220
 statistics sampled from 16719 (16742) to 16719 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.557), E-opt: 0.2 (0.196), width:  16
 Scan time:  7.710

The best scores are:                                      opt bits E(85289)
NP_005672 (OMIM: 604903) TATA box-binding protein- ( 450) 3034 702.0 7.9e-202
NP_001188465 (OMIM: 604903) TATA box-binding prote ( 450) 3034 702.0 7.9e-202
NP_647603 (OMIM: 604903) TATA box-binding protein- ( 336) 2271 527.8 1.7e-149
XP_006711676 (OMIM: 604903) PREDICTED: TATA box-bi ( 336) 2271 527.8 1.7e-149
XP_016858248 (OMIM: 604903) PREDICTED: TATA box-bi ( 336) 2271 527.8 1.7e-149
XP_016858249 (OMIM: 604903) PREDICTED: TATA box-bi ( 336) 2271 527.8 1.7e-149
XP_016858247 (OMIM: 604903) PREDICTED: TATA box-bi ( 412) 2143 498.6 1.2e-140
XP_006711675 (OMIM: 604903) PREDICTED: TATA box-bi ( 412) 2143 498.6 1.2e-140
XP_005273400 (OMIM: 604903) PREDICTED: TATA box-bi ( 311) 1987 463.0 5.1e-130


>>NP_005672 (OMIM: 604903) TATA box-binding protein-asso  (450 aa)
 initn: 3034 init1: 3034 opt: 3034  Z-score: 3744.4  bits: 702.0 E(85289): 7.9e-202
Smith-Waterman score: 3034; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)

               10        20        30        40        50        60
pF1KB7 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
              370       380       390       400       410       420

              430       440       450
pF1KB7 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
       ::::::::::::::::::::::::::::::
NP_005 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
              430       440       450

>>NP_001188465 (OMIM: 604903) TATA box-binding protein-a  (450 aa)
 initn: 3034 init1: 3034 opt: 3034  Z-score: 3744.4  bits: 702.0 E(85289): 7.9e-202
Smith-Waterman score: 3034; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)

               10        20        30        40        50        60
pF1KB7 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
              370       380       390       400       410       420

              430       440       450
pF1KB7 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
       ::::::::::::::::::::::::::::::
NP_001 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
              430       440       450

>>NP_647603 (OMIM: 604903) TATA box-binding protein-asso  (336 aa)
 initn: 2271 init1: 2271 opt: 2271  Z-score: 2805.0  bits: 527.8 E(85289): 1.7e-149
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 336 aa overlap (115-450:1-336)

           90       100       110       120       130       140    
pF1KB7 EDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNTFANRMKNIGVMNYLKISLQHALYL
                                     ::::::::::::::::::::::::::::::
NP_647                               MESFNTFANRMKNIGVMNYLKISLQHALYL
                                             10        20        30

          150       160       170       180       190       200    
pF1KB7 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_647 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
               40        50        60        70        80        90

          210       220       230       240       250       260    
pF1KB7 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_647 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
              100       110       120       130       140       150

          270       280       290       300       310       320    
pF1KB7 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_647 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
              160       170       180       190       200       210

          330       340       350       360       370       380    
pF1KB7 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_647 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
              220       230       240       250       260       270

          390       400       410       420       430       440    
pF1KB7 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_647 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
              280       290       300       310       320       330

          450
pF1KB7 IVNPRL
       ::::::
NP_647 IVNPRL
             

>>XP_006711676 (OMIM: 604903) PREDICTED: TATA box-bindin  (336 aa)
 initn: 2271 init1: 2271 opt: 2271  Z-score: 2805.0  bits: 527.8 E(85289): 1.7e-149
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 336 aa overlap (115-450:1-336)

           90       100       110       120       130       140    
pF1KB7 EDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNTFANRMKNIGVMNYLKISLQHALYL
                                     ::::::::::::::::::::::::::::::
XP_006                               MESFNTFANRMKNIGVMNYLKISLQHALYL
                                             10        20        30

          150       160       170       180       190       200    
pF1KB7 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
               40        50        60        70        80        90

          210       220       230       240       250       260    
pF1KB7 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
              100       110       120       130       140       150

          270       280       290       300       310       320    
pF1KB7 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
              160       170       180       190       200       210

          330       340       350       360       370       380    
pF1KB7 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
              220       230       240       250       260       270

          390       400       410       420       430       440    
pF1KB7 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
              280       290       300       310       320       330

          450
pF1KB7 IVNPRL
       ::::::
XP_006 IVNPRL
             

>>XP_016858248 (OMIM: 604903) PREDICTED: TATA box-bindin  (336 aa)
 initn: 2271 init1: 2271 opt: 2271  Z-score: 2805.0  bits: 527.8 E(85289): 1.7e-149
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 336 aa overlap (115-450:1-336)

           90       100       110       120       130       140    
pF1KB7 EDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNTFANRMKNIGVMNYLKISLQHALYL
                                     ::::::::::::::::::::::::::::::
XP_016                               MESFNTFANRMKNIGVMNYLKISLQHALYL
                                             10        20        30

          150       160       170       180       190       200    
pF1KB7 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
               40        50        60        70        80        90

          210       220       230       240       250       260    
pF1KB7 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
              100       110       120       130       140       150

          270       280       290       300       310       320    
pF1KB7 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
              160       170       180       190       200       210

          330       340       350       360       370       380    
pF1KB7 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
              220       230       240       250       260       270

          390       400       410       420       430       440    
pF1KB7 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
              280       290       300       310       320       330

          450
pF1KB7 IVNPRL
       ::::::
XP_016 IVNPRL
             

>>XP_016858249 (OMIM: 604903) PREDICTED: TATA box-bindin  (336 aa)
 initn: 2271 init1: 2271 opt: 2271  Z-score: 2805.0  bits: 527.8 E(85289): 1.7e-149
Smith-Waterman score: 2271; 100.0% identity (100.0% similar) in 336 aa overlap (115-450:1-336)

           90       100       110       120       130       140    
pF1KB7 EDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNTFANRMKNIGVMNYLKISLQHALYL
                                     ::::::::::::::::::::::::::::::
XP_016                               MESFNTFANRMKNIGVMNYLKISLQHALYL
                                             10        20        30

          150       160       170       180       190       200    
pF1KB7 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQAYKGLLQYYTWSEKKMELSKLDKD
               40        50        60        70        80        90

          210       220       230       240       250       260    
pF1KB7 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFVKSYVEMLEFYGDRDGAQEVLTNYA
              100       110       120       130       140       150

          270       280       290       300       310       320    
pF1KB7 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKILYQIVPSHKLMLEFHTLLRKSEKEE
              160       170       180       190       200       210

          330       340       350       360       370       380    
pF1KB7 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNILMGNHLAWVQEEWNSRKNWWPGFHF
              220       230       240       250       260       270

          390       400       410       420       430       440    
pF1KB7 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRYILKQDHQILGKKIKRMKRSVKKYS
              280       290       300       310       320       330

          450
pF1KB7 IVNPRL
       ::::::
XP_016 IVNPRL
             

>>XP_016858247 (OMIM: 604903) PREDICTED: TATA box-bindin  (412 aa)
 initn: 2136 init1: 2136 opt: 2143  Z-score: 2645.8  bits: 498.6 E(85289): 1.2e-140
Smith-Waterman score: 2693; 91.6% identity (91.6% similar) in 450 aa overlap (1-450:1-412)

               10        20        30        40        50        60
pF1KB7 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
       ::::::::::::::::::::::::::::::::::::::                      
XP_016 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEI----------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KB7 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
                       ::::::::::::::::::::::::::::::::::::::::::::
XP_016 ----------------SLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
                      100       110       120       130       140  

              190       200       210       220       230       240
pF1KB7 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
            150       160       170       180       190       200  

              250       260       270       280       290       300
pF1KB7 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
            210       220       230       240       250       260  

              310       320       330       340       350       360
pF1KB7 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
            270       280       290       300       310       320  

              370       380       390       400       410       420
pF1KB7 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
            330       340       350       360       370       380  

              430       440       450
pF1KB7 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
       ::::::::::::::::::::::::::::::
XP_016 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
            390       400       410  

>>XP_006711675 (OMIM: 604903) PREDICTED: TATA box-bindin  (412 aa)
 initn: 2136 init1: 2136 opt: 2143  Z-score: 2645.8  bits: 498.6 E(85289): 1.2e-140
Smith-Waterman score: 2693; 91.6% identity (91.6% similar) in 450 aa overlap (1-450:1-412)

               10        20        30        40        50        60
pF1KB7 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
       ::::::::::::::::::::::::::::::::::::::                      
XP_006 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEI----------------------
               70        80        90                              

              130       140       150       160       170       180
pF1KB7 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
                       ::::::::::::::::::::::::::::::::::::::::::::
XP_006 ----------------SLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
                      100       110       120       130       140  

              190       200       210       220       230       240
pF1KB7 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
            150       160       170       180       190       200  

              250       260       270       280       290       300
pF1KB7 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
            210       220       230       240       250       260  

              310       320       330       340       350       360
pF1KB7 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
            270       280       290       300       310       320  

              370       380       390       400       410       420
pF1KB7 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MGNHLAWVQEEWNSRKNWWPGFHFSYFWAKSDWKEDTALACEKAFVAGLLLGKGCRYFRY
            330       340       350       360       370       380  

              430       440       450
pF1KB7 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
       ::::::::::::::::::::::::::::::
XP_006 ILKQDHQILGKKIKRMKRSVKKYSIVNPRL
            390       400       410  

>>XP_005273400 (OMIM: 604903) PREDICTED: TATA box-bindin  (311 aa)
 initn: 1987 init1: 1987 opt: 1987  Z-score: 2455.2  bits: 463.0 E(85289): 5.1e-130
Smith-Waterman score: 1987; 99.0% identity (99.3% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KB7 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSDFSEELKGPVTDDEEVETSVLSGAGMHFPWLQTYVETVAIGGKRRKDFAQTTSACLSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IQEALLKHQWQQAAEYMYSYFQTLEDSDSYKRQAAPEIIWKLGSEILFYHPKSNMESFNT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 FANRMKNIGVMNYLKISLQHALYLLHHGMLKDAKRNLSEAETWRHGENTSSREILINLIQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AYKGLLQYYTWSEKKMELSKLDKDDYAYNAVAQDVFNHSWKTSANISALIKIPGVWDPFV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKIL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_005 KSYVEMLEFYGDRDGAQEVLTNYAYDEKFPSNPNAHIYLYNFLKRQKAPRSKLISVLKHL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 YQIVPSHKLMLEFHTLLRKSEKEEHRKLGLEVLFGVLDFAGCTKNITAWKYLAKYLKNIL
        .:                                                         
XP_005 QKISIMYSTLR                                                 
              310                                                  




450 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:53:36 2016 done: Sat Nov  5 07:53:37 2016
 Total Scan time:  7.710 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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