GENSCAN 1.0	Date run:  5-Nov-116	Time: 07:35:54

Sequence gi568815596f:113027687_113232868 : 205182 bp : 46.42% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Init +   3016   3087   72  0  0   93   77    76 0.474   8.07
 1.02 Intr +   9376   9472   97  0  1   85   67    65 0.210   3.68
 1.03 Intr +  23540  23709  170  0  2   49   37   105 0.039   1.17
 1.04 Intr +  31726  31781   56  0  2   82  117    55 0.552   5.58
 1.05 Intr +  33166  33251   86  1  2   89   81    14 0.876   0.26
 1.06 Intr +  34438  34565  128  2  2  112   78    55 0.587   7.30
 1.07 Term +  34767  34991  225  2  0  126   49   335 0.998  30.18
 1.08 PlyA +  36582  36587    6                               1.05

 2.00 Prom +  38064  38103   40                              -4.76
 2.01 Init +  42711  42928  218  2  2   63   13   108 0.202  -0.99
 2.02 Intr +  46643  46728   86  2  2   38   99   109 0.879   6.46
 2.03 Intr +  47037  47164  128  1  2  143   78    30 0.951   7.90
 2.04 Term +  47466  47678  213  2  0  111   50   175 0.648  13.23
 2.05 PlyA +  48136  48141    6                               1.05

 3.03 PlyA -  49002  48997    6                               1.05
 3.02 Term -  49903  49696  208  0  1   35   38   371 0.155  23.61
 3.01 Init -  84971  84955   17  2  2   84   93    25 0.369   2.27
 3.00 Prom -  88428  88389   40                              -4.26

 4.04 PlyA -  89815  89810    6                               1.05
 4.03 Term -  93471  93259  213  0  0   -2   43   335 0.663  17.23
 4.02 Intr -  97271  97146  126  2  0   45   72    62 0.393   1.18
 4.01 Init -  97413  97375   39  0  0   62   97    24 0.555   0.88
 4.00 Prom -  97628  97589   40                              -7.76

 5.00 Prom +  99873  99912   40                              -4.86
 5.01 Init +  99939 100054  116  2  2   54  110    88 0.835   5.35
 5.02 Intr + 101890 101978   89  1  2   96  113    70 0.943   9.91
 5.03 Intr + 103359 103471  113  1  2  150   83    32 0.976   9.00
 5.04 Term + 104970 105185  216  2  0  107   38   382 0.989  32.24
 5.05 PlyA + 106063 106068    6                               1.05

 6.00 Prom + 110186 110225   40                              -4.96
 6.01 Init + 129846 129978  133  2  1   66   20   214 0.888  10.70
 6.02 Intr + 130569 130667   99  1  0   64   82    40 0.584   1.08
 6.03 Intr + 130838 130992  155  0  2   84   82    55 0.597   4.29
 6.04 Intr + 141578 141618   41  1  2   87   96    10 0.115  -1.28
 6.05 Intr + 146943 146969   27  0  0  100   94    73 0.663   6.33
 6.06 Intr + 147772 147893  122  1  2   64   41    56 0.510  -1.36
 6.07 Intr + 148880 148926   47  0  2  101   77    24 0.668   0.73
 6.08 Intr + 154660 155826 1167  0  0  100   99   335 0.678  24.68
 6.09 Intr + 158340 158569  230  2  2   56   98    93 0.542   3.77
 6.10 Intr + 164694 164903  210  0  0   26   72   143 0.097   4.53
 6.11 Intr + 165362 165442   81  2  0  112   52    98 0.992   7.35
 6.12 Intr + 165572 165684  113  2  2  113   63   110 0.552  11.02
 6.13 Intr + 165906 165964   59  1  2   44  110    25 0.561  -1.10
 6.14 Intr + 166173 166262   90  2  0   73   95    88 0.945   8.19
 6.15 Intr + 168041 168084   44  1  2  115   67    89 0.996   6.54
 6.16 Intr + 168461 168621  161  2  2   54   70   233 0.543  17.73
 6.17 Intr + 169878 169948   71  1  2   62   97    44 0.988   1.60
 6.18 Intr + 170061 170227  167  2  2   44  103   232 0.736  19.06
 6.19 Intr + 171054 171198  145  0  1   72   68   168 0.976  13.48
 6.20 Intr + 171397 171540  144  0  0   73   83   351 0.982  33.58
 6.21 Term + 173472 173729  258  2  0   55   48   463 0.999  34.55
 6.22 PlyA + 175209 175214    6                               1.05

 7.08 PlyA - 175451 175446    6                               1.05
 7.07 Term - 179552 179356  197  0  2   95   55    78 0.462   2.77
 7.06 Intr - 187672 187597   76  1  1  118   82    27 0.803   4.19
 7.05 Intr - 190176 190061  116  1  2   67   78   104 0.934   7.47
 7.04 Intr - 192492 192406   87  1  0   95   80   126 0.644  12.44
 7.03 Intr - 199570 199469  102  2  0  121  110   104 0.870  16.05
 7.02 Intr - 201941 201908   34  2  1  109   97    -9 0.498  -0.10
 7.01 Init - 204932 204855   78  2  0   88   66    18 0.286   0.66

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl -  49926  49696  231  0  0   68   38   365 0.811  24.61


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815596f:113027687_113232868|GENSCAN_predicted_peptide_1|277_aa
MTEFESEDTGSNGWNLKERNSKEKVRSEVLKNQVAAPSVPSHDEREHLCGSATTVGVSCW
RAMVKLHSPAEASPQALEASEAQTRKAPECGSGVQKLPVALALFMGLSQQKLWGSLHPVE
LKMVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAGKVIKGEEISVVPNRWLDASLSPVI
LGVQGGSQCLSCGVGQEPTLTLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPG
WFLCTVPEADQPVRLTQLPENGGWNAPITDFYFQQCD

>gi568815596f:113027687_113232868|GENSCAN_predicted_CDS_1|834_bp
atgacggagtttgaatctgaggacacaggtagcaatggttggaacctgaaggagagaaac
tccaaggagaaggtgcgctcagaagtgcttaagaaccaggtggccgctccctctgtacct
tcccatgatgagcgtgagcatctgtgtggatcagcgaccacagttggagtttcctgctgg
agagcaatggtcaaactacacagtccggcggaggcgagtccgcaggctctggaagcctct
gaggcacagacgaggaaagcgcctgaatgtggatctggggtacagaagttgccggtggct
ctggccctgttcatgggactcagtcagcagaaactgtgggggagtctacaccctgtggag
ctcaagatggtcctgagtggggcgctgtgcttccgaatgaaggactcggcattgaaggtg
ctttatctgcataataaccagcttctagctggagggctgcatgcagggaaggtcattaaa
ggtgaagagatcagcgtggtccccaatcggtggctggatgccagcctgtcccccgtcatc
ctgggtgtccagggtggaagccagtgcctgtcatgtggggtggggcaggagccgactcta
acactagagccagtgaacatcatggagctctatcttggtgccaaggaatccaagagcttc
accttctaccggcgggacatggggctcacctccagcttcgagtcggctgcctacccgggc
tggttcctgtgcacggtgcctgaagccgatcagcctgtcagactcacccagcttcccgag
aatggtggctggaatgcccccatcacagacttctacttccagcagtgtgactag

>gi568815596f:113027687_113232868|GENSCAN_predicted_peptide_2|214_aa
MGSSWTGPALNFFQLFELTLTQSGSHQLAIHLHPGPSTLLPHLDLGTATTLPTVLLLQPK
KPQWFGQGEPIIKIKYADQKALYTRDGQLLVGDPVADNCCAEKICILPNRGLARTKVPIF
LGIQGGSRCLACVETEEGPSLQLEDVNIEELYKGGEEATRFTFFQSSSGSAFRLEAAAWP
GWFLCGPAEPQQPVQLTKESEPSARTKFYFEQSW

>gi568815596f:113027687_113232868|GENSCAN_predicted_CDS_2|645_bp
atgggatccagctggactggaccagcattgaatttcttccagctctttgagctgacactg
acccagagtgggagtcatcagcttgctatccaccttcacccagggccctccactttgttg
ccccacctagatctgggcacagctaccacactgcccactgtcctgctgctacaaccaaag
aagccccagtggtttggccaaggggagcccatcatcaaaattaaatatgcagaccagaag
gctctatacacaagagatggccagctgctggtgggagatcctgttgcagacaactgctgt
gcagagaagatctgcatacttcctaacagaggcttggcccgcaccaaggtccccattttc
ctggggatccagggagggagccgctgcctggcatgtgtggagacagaagaggggccttcc
ctacagctggaggatgtgaacattgaggaactgtacaaaggtggtgaagaggccacacgc
ttcaccttcttccagagcagctcaggctccgccttcaggcttgaggctgctgcctggcct
ggctggttcctgtgtggcccggcagagccccagcagccagtacagctcaccaaggagagt
gagccctcagcccgtaccaagttttactttgaacagagctggtag

>gi568815596f:113027687_113232868|GENSCAN_predicted_peptide_3|74_aa
MEEEERLGDRARPCPEEEEEEEEKEEEEEKEKKEEEEEEEEEEEEEERRKKRKKKKRKKK
KKKGRRRRRNRNQV

>gi568815596f:113027687_113232868|GENSCAN_predicted_CDS_3|225_bp
atggaggaagaggaacgcctgggtgatagagcaagaccctgtcctgaggaggaggaggag
gaggaggagaaggaggaggaggaggagaaggagaagaaggaggaggaggaggaagaagaa
gaggaggaagaggaggaggagaggaggaagaagaggaagaagaagaagaggaagaagaag
aagaagaaggggaggaggaggaggaggaataggaatcaagtgtga

>gi568815596f:113027687_113232868|GENSCAN_predicted_peptide_4|125_aa
MSLQIAEEKWLAKSEFREYSPGEKTLGAPGTSLLCVISPLCPEKWPSLSFVDMHRKTKTK
TMKKNKRKRKKRKRKRKKKKKKRRRRRRKKKKRKKKKKKKRRRRRKKKRRRGRKKKKKKK
KLLKA

>gi568815596f:113027687_113232868|GENSCAN_predicted_CDS_4|378_bp
atgtccttacagattgcagaagagaagtggcttgccaagtctgaattcagagagtattct
cctggagaaaagacgctcggggctcctggaacctccctgctctgtgtcatttccccgctg
tgtcctgagaagtggcccagtctgtcctttgtcgacatgcacaggaagacgaagacgaag
acgatgaagaagaataagaggaagaggaagaagaggaagaggaagaggaagaagaagaag
aagaagaggaggaggaggaggaggaagaagaagaagaggaagaagaagaagaagaagaag
aggagaaggaggaggaagaagaagaggagaagggggaggaagaagaagaagaagaagaag
aaactactcaaggcttag

>gi568815596f:113027687_113232868|GENSCAN_predicted_peptide_5|177_aa
MEICRGLRSHLITLLLFLFHSETICRPSGRKSSKMQAFRIWDVNQKTFYLRNNQLVAGYL
QGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSCVKSGDETRLQLEAVNITDLSENRKQD
KRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQEDE

>gi568815596f:113027687_113232868|GENSCAN_predicted_CDS_5|534_bp
atggaaatctgcagaggcctccgcagtcacctaatcactctcctcctcttcctgttccat
tcagagacgatctgccgaccctctgggagaaaatccagcaagatgcaagccttcagaatc
tgggatgttaaccagaagaccttctatctgaggaacaaccaactagttgctggatacttg
caaggaccaaatgtcaatttagaagaaaagatagatgtggtacccattgagcctcatgct
ctgttcttgggaatccatggagggaagatgtgcctgtcctgtgtcaagtctggtgatgag
accagactccagctggaggcagttaacatcactgacctgagcgagaacagaaagcaggac
aagcgcttcgccttcatccgctcagacagtggccccaccaccagttttgagtctgccgcc
tgccccggttggttcctctgcacagcgatggaagctgaccagcccgtcagcctcaccaat
atgcctgacgaaggcgtcatggtcaccaaattctacttccaggaggacgagtag

>gi568815596f:113027687_113232868|GENSCAN_predicted_peptide_6|1187_aa
MGKGPRGGLGRAGAPPAVAALDGDRVPCSALATPASTCGAAVAEGWTCCSGQCTRQTSVS
MVRMSRSGDQYQSEDWANVIFPVCEAYKEESFIHSSSRYLLSVNYESGMQALRILLLLFA
YGLERENKQVGTTFSLQAQMGSRTILEKLEERPQVQTEASVLQLQAREFHSWFLPAATSV
IRQLLGLQRDRTEPPQSSEKLKGHFNVEGRYGFPVSPAASAPPSPHSETVKADAPGHSWA
AFAQWMMGDYRLPDHPQPMEILNLYLGDSLEPHPGECPRETCSHEDPPEPFEEQTWATDP
PEPTRQNVPPWGSGVELTHLGSWVHQDGLEPCQEQTRATDPPESTRQDAPPWGSGVELTH
LGSPSAQREHRQNTASPGSPVNSHLPGSPKQNRSTSTQVVFWAGILQAQMCVLDLEEELE
KTEGLKAGLKCCLPTPPVDLPGDTGLHSSPPENEDSGEDSSEPEGEGQAWLREGTPDSSP
QWGAEEESMFFSNPLFLASPCSENSASGECFSWGASDSHAGVRTGPESPATLEPPLPEDT
VLWELESEPDLGDGAAISGHCTPPFPVPIYKPHSICWASVAAAEGAPAAPPGHGESEEGS
PQLQHHSSGILPKWTLDASQSSLLETDGEQPSSLKKKEAGEAPKPGEEVKSEGTARPAET
GDVQPDIHLTSAEHENLRTPMNSSWLPGSPMPQAQSPEEGQRPPAGDKLANGVRNNKVAW
NLASRLYRLEGFRKSEVAAYLQKNNDFSRAVAEEYLSFFQFGGQSLDRALRSFLQALVLS
GETQERERILYQFSRRFHHCNPGIFPSVDSVHTLTCAIMLLNTDLHGQNIGKSMSCQEFI
TNLNGLRDGGNFPKELLKALYWSIRSEKLEWAVDEEDTARPEKAQPSLPAGKMSKPFLQL
AQDPTVPTYKQGILARKMHQDADGKKTPWGKRGWKMFHTLLRGMVLYFLKQGEDHCLEGE
SLVGQMVDEPVGVHHSLATPATHYTKKPHVFQLRTADWRLYLFQAPTAKEMSSWIARINL
AAATHSAPPFPAAVGSQRRFVRPILPVGPAQSSLEEQHRSHENCLDAAADDLLDLQRNLP
ERRGRGRELEEHRLRKEYLEYEKTRYETYVQLLVARLHCPSDALDLWEEQLGREAGGTRE
PKLSLKKSHSSPSLHQDEAPTTAKVKRNISERRTYRKIIPKRNRNQL

>gi568815596f:113027687_113232868|GENSCAN_predicted_CDS_6|3564_bp
atgggtaagggaccacggggaggcctgggccgggcgggggcacccccggccgtcgccgcc
ctcgacggtgaccgtgtgccgtgcagcgctctcgccacgccggcgagcacctgcggagcg
gctgtcgctgagggatggacttgctgctctggtcaatgcactcgccagacctctgtgtcc
atggtccgcatgtctaggtcaggggaccagtatcaaagtgaagactgggcaaacgtgata
tttcctgtatgtgaagcatataaagaagagtcattcattcactcatctagcagatattta
ctgagtgtcaactacgaatcaggcatgcaggcactgcgaatactactgctcttatttgca
tatgggttggaaagagaaaataagcaagtaggcaccaccttctctctccaagctcagatg
ggctccaggaccatcctggagaagctcgaggagagaccccaggttcagacagaggcctct
gtcctgcagctccaggccagggagttccactcatggttcctgcctgcagcaacatctgta
attcggcagcttctcgggctgcagagggacaggacagagccacctcagagctcagaaaaa
ctgaagggccactttaatgtagagggtagatatggattcccagtttctccagcggccagt
gctccccctagtccacacagtgagaccgtgaaagcagatgctccggggcactcctgggca
gcttttgctcagtggatgatgggtgactacagactccctgaccacccccagcccatggaa
attctcaacctgtacttgggagacagcctggagccccacccaggagagtgcccaagggaa
acgtgcagccatgaggatccaccggagcctttcgaggagcaaacctgggccactgaccct
cctgaacctaccagacaaaatgttcctccctggggctccggtgtggagctcacacacctg
gggagctgggtccatcaggacgggctggagccttgccaggagcaaacccgggccactgac
cctcctgaatctaccagacaagatgctcctccctggggctccggtgtggagctcacacac
ctggggagcccctctgcccagagggagcacaggcagaacacagcatcaccagggtcacca
gtgaacagccatctaccggggagcccaaagcagaaccggagcacgtccacacaggtagtg
ttctgggcaggcatcctgcaggcccagatgtgtgtcctagacctggaggaggagctggag
aagacggaagggctcaaggctgggctgaaatgctgtctccccacgccccctgtggacctc
cccggggacacgggcctgcactccagcccacctgagaatgaagactcaggggaagacagc
agtgagcctgagggagagggccaggcatggctgagagagggaaccccagactcttcccca
cagtggggagctgaggaggagagcatgttcttcagcaaccccctcttcctggcgagtcct
tgctcagagaacagtgcttctggagagtgcttttcctggggggcttcagactcccatgca
ggtgtgaggactggacctgagagcccagcgactctggagcctcccctcccagaagacaca
gtgctgtgggagctggaaagtgagccagatttgggggacggcgctgctatcagtgggcat
tgtacccctccattccctgtgcccatctataaaccacactccatctgctgggcctcagtg
gctgccgctgagggggctcctgcagcacctcctggtcacggggagagtgaggagggcagc
ccgcagcttcaacaccacagctcaggcattttgcccaagtggacactagatgcttcacag
tcttcactcttggagacggatggggaacagccaagttccttgaagaaaaaggaggcaggg
gaggccccaaaaccaggcgaggaagtaaagagtgaaggaacagccaggcctgcagagact
ggagacgtccagcctgacattcacctgacttctgcagaacatgagaatctgaggacaccg
atgaactcttcttggcttcctgggagccctatgccccaagcacagtccccagaggaaggc
cagagaccaccagctggagacaagctagctaatggcgtcaggaacaacaaggtagcctgg
aacttggcctcacgcctctatcgcctggagggcttccggaagtctgaagtggctgcctac
ctgcagaagaacaatgactttagcagggctgtggctgaggagtacctgtccttcttccag
tttggaggccagagtctggaccgagccctccggagcttcctccaggccttggtgctcagt
ggggagactcaggaacgggagcgaatcctctaccagttctccagacgcttccaccattgc
aatccggggatcttcccctcagtagattctgtacacaccttgacatgtgcaatcatgctg
cttaacacggacctgcatggacagaacattgggaagagcatgagctgccaggaattcata
accaacctgaatgggctgagggatggcgggaacttccccaaggagctgctgaaggccctc
tactggtctatccgcagcgagaagctcgagtgggccgtggatgaagaagacacagccaga
cctgagaaggcccagccgtccctgccagctggcaagatgagcaagcccttccttcagctg
gctcaggatcccacagtgcccacctacaagcagggcatcctggctcggaaaatgcatcaa
gatgcagacggcaagaagacgccatggggcaagcgtggctggaagatgttccacacctta
ctgcgagggatggttctctacttcctgaagcagggagaagaccactgtctggagggggag
agcttggtggggcagatggtggatgagcccgtgggggtgcaccactcgctggccaccccc
gccacgcattacaccaagaagccgcacgtcttccagctgcgcacggctgactggcgcctc
tacctcttccaggcacccactgccaaggagatgagctcctggatcgcgcgcatcaacttg
gctgcggccacgcactccgcgccgcccttccccgccgctgtgggctcccagcgcagattc
gtgcggcccatcctgcccgtgggccccgcccagagctccctggaggagcagcatcgatcc
cacgagaactgcctggacgctgccgcggacgacctgctggatctacagaggaacctgccg
gagcggcggggccgtggccgcgagctggaggagcaccgcctgcggaaggagtacctggag
tacgagaaaacccgctacgagacctacgtgcagctgctggtggcccgcctgcactgcccc
tctgatgctctggacctgtgggaggagcagctggggagggaagctggaggcactcgggag
cccaagctcagcctgaagaagtcccactcgagcccgtccctgcaccaggatgaggctccc
accacggccaaggtgaagcgcaacatctcagagcgcagaacctaccggaagatcatccct
aagcggaaccgcaatcagctgtga

>gi568815596f:113027687_113232868|GENSCAN_predicted_peptide_7|229_aa
MPTLQANCRTERSPNPWDKTAGSRHQPFICSLDDLVSGREMVGPTLPGYPPHIPTSGQGS
YASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSLLSIAPPQVLLQCGIPLAAAVS
QASPRELKTDIPQGLGPWEVLAQARPAQGARSLQEIHVDQPTLAEVDSDLLKPLALVTGS
DMGTRPKAGCYRRLFLDLSLKLPGSRESLSAIFAPRKWILRVPGAILEA

>gi568815596f:113027687_113232868|GENSCAN_predicted_CDS_7|690_bp
atgcccactctccaggccaactgcaggactgagaggtcacccaacccatgggacaaaaca
gctggcagcagacaccagcccttcatttgttcccttgatgaccttgtgtcagggcgagag
atggtggggcccacgctgcccggatacccaccccacatccccaccagcggacagggcagc
tatgcctcctctgccatcgcaggcatggtggcaggaagtgaatactctggcaatgcctat
ggccacaccccctactcctcctacagcgaggcctggcgcttccccaactccagcttgctg
agtatagcaccaccccaggtcctcctgcagtgcggcatccccttggcagctgccgtcagc
caggccagccccagggagcttaaaacagacattccacagggcctgggcccctgggaggtt
ctagcacaggccaggccagcccagggtgctaggagcttgcaggaaattcatgtggaccaa
ccaactctggcagaagtggactctgatctccttaaacccctggctctagtgactggctca
gatatgggcacacggcccaaggcaggctgctacaggagactattcctggatttgagtttg
aaacttccaggaagcagagagtcactttctgctatatttgcaccaagaaaatggatcttg
agagttcctggggccatcttggaagcatga