Result of FASTA (ccds) for pF1KE1032
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1032, 1427 aa
  1>>>pF1KE1032 1427 - 1427 aa - 1427 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8249+/-0.00117; mu= 6.7788+/- 0.071
 mean_var=166.6773+/-33.544, 0's: 0 Z-trim(107.5): 29  B-trim: 0 in 0/53
 Lambda= 0.099343
 statistics sampled from 9627 (9637) to 9627 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.296), width:  16
 Scan time:  4.080

The best scores are:                                      opt bits E(32554)
CCDS41710.1 NPAT gene_id:4863|Hs108|chr11          (1427) 9164 1326.8       0


>>CCDS41710.1 NPAT gene_id:4863|Hs108|chr11               (1427 aa)
 initn: 9164 init1: 9164 opt: 9164  Z-score: 7102.8  bits: 1326.8 E(32554):    0
Smith-Waterman score: 9164; 99.9% identity (100.0% similar) in 1427 aa overlap (1-1427:1-1427)

               10        20        30        40        50        60
pF1KE1 MLLPSDVARLVLGYLQQENLISTCQTFILESSDLKEYAEHCTDEGFIPACLLSLFGKNLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MLLPSDVARLVLGYLQQENLISTCQTFILESSDLKEYAEHCTDEGFIPACLLSLFGKNLT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 TILNEYVAMKTKETSNNVPAIMSSLWKKLDHTLSQIRSMQSSPRFAGSQRARTRTGIAEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TILNEYVAMKTKETSNNVPAIMSSLWKKLDHTLSQIRSMQSSPRFAGSQRARTRTGIAEI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 KRQRKLASQTAPASAELLTLPYLSGQFTTPPSTGTQVTRPSGQISDPSRSYFVVVNHSQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KRQRKLASQTAPASAELLTLPYLSGQFTTPPSTGTQVTRPSGQISDPSRSYFVVVNHSQS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QDTVTTGEALNVIPGAQEKKAHASLMSPGRRKSESQRKSTTLSGPHSTIRNFQDPNAFAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 QDTVTTGEALNVIPGAQEKKAHASLMSPGRRKSESQRKSTTLSGPHSTIRNFQDPNAFAV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 EKQMVIENAREKILSNKSLQEKLAENINKFLTSDNNIAQVPKQTDNNPTEPETSIDEFLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EKQMVIENAREKILSNKSLQEKLAENINKFLTSDNNIAQVPKQTDNNPTEPETSIDEFLG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 LPSEIHMSEEAIQDILEQTESDPAFQALFDLFDYGKTKNNKNISQSISSQPMESNPSIVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LPSEIHMSEEAIQDILEQTESDPAFQALFDLFDYGKTKNNKNISQSISSQPMESNPSIVL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 ADETNLAVKGSFETEESDGQSGQPAFCTSYQNDDPLNALKNSNNHDVLRQEDQENFSQIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ADETNLAVKGSFETEESDGQSGQPAFCTSYQNDDPLNALKNSNNHDVLRQEDQENFSQIS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 TSIQKKAFKTAVPTEQKCDIDITFESVPNLNDFNQRGNSNAECNPHCAELYTNQMSTETE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TSIQKKAFKTAVPTEQKCDIDITFESVPNLNDFNQRGNSNAECNPHCAELYTNQMSTETE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE1 MAIGIEKNSLSSNVPSESQLQPDQPDIPITSFVSLGCEANNENLILSGKSSQLLSQDTSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MAIGIEKNSLSSNVPSESQLQPDQPDIPITSFVSLGCEANNENLILSGKSSQLLSQDTSL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE1 TGKPSKKSQFCENSNDTVKLKINFHGSKSSDSSEIHKSKIEINVLEPVMSQLSNCQDNSC
       ::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::::
CCDS41 TGKPSKKSQFCENSNDTVKLKINFHGSKSSDSSEVHKSKIEINVLEPVMSQLSNCQDNSC
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE1 LQSEILPVSVESSHLNVSGQVEIHLGDSLSSTKQPSNDSASVELNHTENEAQASKSENSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LQSEILPVSVESSHLNVSGQVEIHLGDSLSSTKQPSNDSASVELNHTENEAQASKSENSQ
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE1 EPSSSVKEENTIFLSLGGNANCEKVALTPPEGTPVENSHSLPPESVCSSVGDSHPESQNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 EPSSSVKEENTIFLSLGGNANCEKVALTPPEGTPVENSHSLPPESVCSSVGDSHPESQNT
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE1 DDKPSSNNSAEIDASNIVSLKVIISDDPFVSSDTELTSAVSSINGENLPTIILSSPTKSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DDKPSSNNSAEIDASNIVSLKVIISDDPFVSSDTELTSAVSSINGENLPTIILSSPTKSP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE1 TKNAELVKCLSSEETVGAVVYAEVGDSASMEQSLLTFKSEDSAVNNTQNEDGIAFSANVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TKNAELVKCLSSEETVGAVVYAEVGDSASMEQSLLTFKSEDSAVNNTQNEDGIAFSANVT
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KE1 PCVSKDGGYIQLMPATSTAFGNSNNILIATCVTDPTALGTSVSQSNVVVLPGNSAPMTAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PCVSKDGGYIQLMPATSTAFGNSNNILIATCVTDPTALGTSVSQSNVVVLPGNSAPMTAQ
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KE1 PLPPQLQTPPRSNSVFAVNQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PLPPQLQTPPRSNSVFAVNQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNN
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KE1 FSTPPRQVLHMPLTAPVCNRSIPQFPVPPKSQKAQGLRNKPCIGKQVNNLVDSSGHSVGC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 FSTPPRQVLHMPLTAPVCNRSIPQFPVPPKSQKAQGLRNKPCIGKQVNNLVDSSGHSVGC
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KE1 HAQKTEVSDKSIATDLGKKSEETTVPFPEESIVPAAKPCHRRVLCFDSTTAPVANTQGPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HAQKTEVSDKSIATDLGKKSEETTVPFPEESIVPAAKPCHRRVLCFDSTTAPVANTQGPN
             1030      1040      1050      1060      1070      1080

             1090      1100      1110      1120      1130      1140
pF1KE1 HKMVSQNKERNAVSFPNLDSPNVSSTLKPPSNNAIKREKEKPPLPKILSKSESAISRHTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 HKMVSQNKERNAVSFPNLDSPNVSSTLKPPSNNAIKREKEKPPLPKILSKSESAISRHTT
             1090      1100      1110      1120      1130      1140

             1150      1160      1170      1180      1190      1200
pF1KE1 IRETQSEKKVSPTEIVLESFHKATANKENELCSDVERQKNPENSKLSIGQQNGGLRSEKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IRETQSEKKVSPTEIVLESFHKATANKENELCSDVERQKNPENSKLSIGQQNGGLRSEKS
             1150      1160      1170      1180      1190      1200

             1210      1220      1230      1240      1250      1260
pF1KE1 IASLQEMTKKQGTSSNNKNVLSVGTAVKDLKQEQTKSASSLITTEMLQDIQRHSSVSRLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 IASLQEMTKKQGTSSNNKNVLSVGTAVKDLKQEQTKSASSLITTEMLQDIQRHSSVSRLA
             1210      1220      1230      1240      1250      1260

             1270      1280      1290      1300      1310      1320
pF1KE1 DSSDLPVPRTPGSGAGEKHKEEPIDIIKAPSSRRFSEDSSTSKVMVPPVTPDLPACSPAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 DSSDLPVPRTPGSGAGEKHKEEPIDIIKAPSSRRFSEDSSTSKVMVPPVTPDLPACSPAS
             1270      1280      1290      1300      1310      1320

             1330      1340      1350      1360      1370      1380
pF1KE1 ETGSENSVNMAAHTLMILSRAAISRTTSATPLKDNTQQFRASSRSTTKKRKIEELDERER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 ETGSENSVNMAAHTLMILSRAAISRTTSATPLKDNTQQFRASSRSTTKKRKIEELDERER
             1330      1340      1350      1360      1370      1380

             1390      1400      1410      1420       
pF1KE1 NSRPSSKNLTNSSIPMKKKKIKKKKLPSSFPAGMDVDKFLLSLHYDE
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 NSRPSSKNLTNSSIPMKKKKIKKKKLPSSFPAGMDVDKFLLSLHYDE
             1390      1400      1410      1420       




1427 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 07:31:56 2016 done: Sat Nov  5 07:31:57 2016
 Total Scan time:  4.080 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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